The use of machine learning for the identification of peripheral artery disease and future mortality risk
Objective A key aspect of the precision medicine effort is the development of informatics tools that can analyze and interpret “big data” sets in an automated and adaptive fashion while providing accurate and actionable clinical information. The aims of this study were to develop machine learning al...
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creator | Ross, Elsie Gyang, MD, MSc Shah, Nigam H., MBBS, PhD Dalman, Ronald L., MD Nead, Kevin T., MD, MPhil Cooke, John P., MD, PhD Leeper, Nicholas J., MD |
description | Objective A key aspect of the precision medicine effort is the development of informatics tools that can analyze and interpret “big data” sets in an automated and adaptive fashion while providing accurate and actionable clinical information. The aims of this study were to develop machine learning algorithms for the identification of disease and the prognostication of mortality risk and to determine whether such models perform better than classical statistical analyses. Methods Focusing on peripheral artery disease (PAD), patient data were derived from a prospective, observational study of 1755 patients who presented for elective coronary angiography. We employed multiple supervised machine learning algorithms and used diverse clinical, demographic, imaging, and genomic information in a hypothesis-free manner to build models that could identify patients with PAD and predict future mortality. Comparison was made to standard stepwise linear regression models. Results Our machine-learned models outperformed stepwise logistic regression models both for the identification of patients with PAD (area under the curve, 0.87 vs 0.76, respectively; P = .03) and for the prediction of future mortality (area under the curve, 0.76 vs 0.65, respectively; P = .10). Both machine-learned models were markedly better calibrated than the stepwise logistic regression models, thus providing more accurate disease and mortality risk estimates. Conclusions Machine learning approaches can produce more accurate disease classification and prediction models. These tools may prove clinically useful for the automated identification of patients with highly morbid diseases for which aggressive risk factor management can improve outcomes. |
doi_str_mv | 10.1016/j.jvs.2016.04.026 |
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The aims of this study were to develop machine learning algorithms for the identification of disease and the prognostication of mortality risk and to determine whether such models perform better than classical statistical analyses. Methods Focusing on peripheral artery disease (PAD), patient data were derived from a prospective, observational study of 1755 patients who presented for elective coronary angiography. We employed multiple supervised machine learning algorithms and used diverse clinical, demographic, imaging, and genomic information in a hypothesis-free manner to build models that could identify patients with PAD and predict future mortality. Comparison was made to standard stepwise linear regression models. Results Our machine-learned models outperformed stepwise logistic regression models both for the identification of patients with PAD (area under the curve, 0.87 vs 0.76, respectively; P = .03) and for the prediction of future mortality (area under the curve, 0.76 vs 0.65, respectively; P = .10). Both machine-learned models were markedly better calibrated than the stepwise logistic regression models, thus providing more accurate disease and mortality risk estimates. Conclusions Machine learning approaches can produce more accurate disease classification and prediction models. These tools may prove clinically useful for the automated identification of patients with highly morbid diseases for which aggressive risk factor management can improve outcomes.</description><identifier>ISSN: 0741-5214</identifier><identifier>EISSN: 1097-6809</identifier><identifier>DOI: 10.1016/j.jvs.2016.04.026</identifier><identifier>PMID: 27266594</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Aged ; Algorithms ; Ankle Brachial Index ; Area Under Curve ; Coronary Angiography ; Data Mining ; Databases, Factual ; Decision Support Techniques ; Female ; Genomics ; Humans ; Linear Models ; Logistic Models ; Machine Learning ; Male ; Middle Aged ; Peripheral Arterial Disease - classification ; Peripheral Arterial Disease - diagnosis ; Peripheral Arterial Disease - genetics ; Peripheral Arterial Disease - mortality ; Predictive Value of Tests ; Prognosis ; Reproducibility of Results ; Risk Assessment ; Risk Factors ; ROC Curve ; Surgery</subject><ispartof>Journal of vascular surgery, 2016-11, Vol.64 (5), p.1515-1522.e3</ispartof><rights>Society for Vascular Surgery</rights><rights>2016 Society for Vascular Surgery</rights><rights>Copyright © 2016 Society for Vascular Surgery. Published by Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c506t-53b5921120c94ae5c73819e595fa22f55377febd2ee823473eb509b88532ff833</citedby><cites>FETCH-LOGICAL-c506t-53b5921120c94ae5c73819e595fa22f55377febd2ee823473eb509b88532ff833</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0741521416301665$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27266594$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ross, Elsie Gyang, MD, MSc</creatorcontrib><creatorcontrib>Shah, Nigam H., MBBS, PhD</creatorcontrib><creatorcontrib>Dalman, Ronald L., MD</creatorcontrib><creatorcontrib>Nead, Kevin T., MD, MPhil</creatorcontrib><creatorcontrib>Cooke, John P., MD, PhD</creatorcontrib><creatorcontrib>Leeper, Nicholas J., MD</creatorcontrib><title>The use of machine learning for the identification of peripheral artery disease and future mortality risk</title><title>Journal of vascular surgery</title><addtitle>J Vasc Surg</addtitle><description>Objective A key aspect of the precision medicine effort is the development of informatics tools that can analyze and interpret “big data” sets in an automated and adaptive fashion while providing accurate and actionable clinical information. The aims of this study were to develop machine learning algorithms for the identification of disease and the prognostication of mortality risk and to determine whether such models perform better than classical statistical analyses. Methods Focusing on peripheral artery disease (PAD), patient data were derived from a prospective, observational study of 1755 patients who presented for elective coronary angiography. We employed multiple supervised machine learning algorithms and used diverse clinical, demographic, imaging, and genomic information in a hypothesis-free manner to build models that could identify patients with PAD and predict future mortality. Comparison was made to standard stepwise linear regression models. Results Our machine-learned models outperformed stepwise logistic regression models both for the identification of patients with PAD (area under the curve, 0.87 vs 0.76, respectively; P = .03) and for the prediction of future mortality (area under the curve, 0.76 vs 0.65, respectively; P = .10). Both machine-learned models were markedly better calibrated than the stepwise logistic regression models, thus providing more accurate disease and mortality risk estimates. Conclusions Machine learning approaches can produce more accurate disease classification and prediction models. These tools may prove clinically useful for the automated identification of patients with highly morbid diseases for which aggressive risk factor management can improve outcomes.</description><subject>Aged</subject><subject>Algorithms</subject><subject>Ankle Brachial Index</subject><subject>Area Under Curve</subject><subject>Coronary Angiography</subject><subject>Data Mining</subject><subject>Databases, Factual</subject><subject>Decision Support Techniques</subject><subject>Female</subject><subject>Genomics</subject><subject>Humans</subject><subject>Linear Models</subject><subject>Logistic Models</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Peripheral Arterial Disease - classification</subject><subject>Peripheral Arterial Disease - diagnosis</subject><subject>Peripheral Arterial Disease - genetics</subject><subject>Peripheral Arterial Disease - mortality</subject><subject>Predictive Value of Tests</subject><subject>Prognosis</subject><subject>Reproducibility of Results</subject><subject>Risk Assessment</subject><subject>Risk Factors</subject><subject>ROC Curve</subject><subject>Surgery</subject><issn>0741-5214</issn><issn>1097-6809</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9Uk2L1TAUDaI4z9Ef4EaydNOaj6ZpEAZk8AsGXDiuQ5rezEunTZ5J--D9e1PeOKgLV7lwzzk5nHMRek1JTQlt3431eMw1K2NNmpqw9gnaUaJk1XZEPUU7IhtaCUabC_Qi55EQSkUnn6MLJlnbCtXskL_dA14z4OjwbOzeB8ATmBR8uMMuJryUvR8gLN55axYfwwY9QPKHPSQzYZMWSCc8-Aym6JgwYLcuawI8x7SYyS8nnHy-f4meOTNlePXwXqIfnz7eXn-pbr59_nr94aaygrRLJXgvFKOUEasaA8JK3lEFQglnGHNCcCkd9AMD6BhvJIdeENV3neDMuY7zS3R11j2s_QyDLdaLTX1IfjbppKPx-u9N8Ht9F49aEKmkbIrA2weBFH-ukBc9-2xhmkyAuGZNuxKeagghBUrPUJtizgnc4zeU6K0iPepSkd4q0qTRpaLCefOnv0fG704K4P0ZACWlo4eks_UQLAw-gV30EP1_5a_-YdvJh1LddA8nyGNcUyjxa6oz00R_325kOxHa8qLSCv4LecO4pw</recordid><startdate>20161101</startdate><enddate>20161101</enddate><creator>Ross, Elsie Gyang, MD, MSc</creator><creator>Shah, Nigam H., MBBS, PhD</creator><creator>Dalman, Ronald L., MD</creator><creator>Nead, Kevin T., MD, MPhil</creator><creator>Cooke, John P., MD, PhD</creator><creator>Leeper, Nicholas J., MD</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20161101</creationdate><title>The use of machine learning for the identification of peripheral artery disease and future mortality risk</title><author>Ross, Elsie Gyang, MD, MSc ; Shah, Nigam H., MBBS, PhD ; Dalman, Ronald L., MD ; Nead, Kevin T., MD, MPhil ; Cooke, John P., MD, PhD ; Leeper, Nicholas J., MD</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c506t-53b5921120c94ae5c73819e595fa22f55377febd2ee823473eb509b88532ff833</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Aged</topic><topic>Algorithms</topic><topic>Ankle Brachial Index</topic><topic>Area Under Curve</topic><topic>Coronary Angiography</topic><topic>Data Mining</topic><topic>Databases, Factual</topic><topic>Decision Support Techniques</topic><topic>Female</topic><topic>Genomics</topic><topic>Humans</topic><topic>Linear Models</topic><topic>Logistic Models</topic><topic>Machine Learning</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Peripheral Arterial Disease - classification</topic><topic>Peripheral Arterial Disease - diagnosis</topic><topic>Peripheral Arterial Disease - genetics</topic><topic>Peripheral Arterial Disease - mortality</topic><topic>Predictive Value of Tests</topic><topic>Prognosis</topic><topic>Reproducibility of Results</topic><topic>Risk Assessment</topic><topic>Risk Factors</topic><topic>ROC Curve</topic><topic>Surgery</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ross, Elsie Gyang, MD, MSc</creatorcontrib><creatorcontrib>Shah, Nigam H., MBBS, PhD</creatorcontrib><creatorcontrib>Dalman, Ronald L., MD</creatorcontrib><creatorcontrib>Nead, Kevin T., MD, MPhil</creatorcontrib><creatorcontrib>Cooke, John P., MD, PhD</creatorcontrib><creatorcontrib>Leeper, Nicholas J., MD</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of vascular surgery</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ross, Elsie Gyang, MD, MSc</au><au>Shah, Nigam H., MBBS, PhD</au><au>Dalman, Ronald L., MD</au><au>Nead, Kevin T., MD, MPhil</au><au>Cooke, John P., MD, PhD</au><au>Leeper, Nicholas J., MD</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The use of machine learning for the identification of peripheral artery disease and future mortality risk</atitle><jtitle>Journal of vascular surgery</jtitle><addtitle>J Vasc Surg</addtitle><date>2016-11-01</date><risdate>2016</risdate><volume>64</volume><issue>5</issue><spage>1515</spage><epage>1522.e3</epage><pages>1515-1522.e3</pages><issn>0741-5214</issn><eissn>1097-6809</eissn><abstract>Objective A key aspect of the precision medicine effort is the development of informatics tools that can analyze and interpret “big data” sets in an automated and adaptive fashion while providing accurate and actionable clinical information. The aims of this study were to develop machine learning algorithms for the identification of disease and the prognostication of mortality risk and to determine whether such models perform better than classical statistical analyses. Methods Focusing on peripheral artery disease (PAD), patient data were derived from a prospective, observational study of 1755 patients who presented for elective coronary angiography. We employed multiple supervised machine learning algorithms and used diverse clinical, demographic, imaging, and genomic information in a hypothesis-free manner to build models that could identify patients with PAD and predict future mortality. Comparison was made to standard stepwise linear regression models. Results Our machine-learned models outperformed stepwise logistic regression models both for the identification of patients with PAD (area under the curve, 0.87 vs 0.76, respectively; P = .03) and for the prediction of future mortality (area under the curve, 0.76 vs 0.65, respectively; P = .10). Both machine-learned models were markedly better calibrated than the stepwise logistic regression models, thus providing more accurate disease and mortality risk estimates. Conclusions Machine learning approaches can produce more accurate disease classification and prediction models. These tools may prove clinically useful for the automated identification of patients with highly morbid diseases for which aggressive risk factor management can improve outcomes.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>27266594</pmid><doi>10.1016/j.jvs.2016.04.026</doi><oa>free_for_read</oa></addata></record> |
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subjects | Aged Algorithms Ankle Brachial Index Area Under Curve Coronary Angiography Data Mining Databases, Factual Decision Support Techniques Female Genomics Humans Linear Models Logistic Models Machine Learning Male Middle Aged Peripheral Arterial Disease - classification Peripheral Arterial Disease - diagnosis Peripheral Arterial Disease - genetics Peripheral Arterial Disease - mortality Predictive Value of Tests Prognosis Reproducibility of Results Risk Assessment Risk Factors ROC Curve Surgery |
title | The use of machine learning for the identification of peripheral artery disease and future mortality risk |
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