Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers
Spider silk research has largely focused on spidroins, proteins that are the primary components of spider silk fibers. Although a number of spidroins have been characterized, other types of proteins associated with silk synthesis are virtually unknown. Previous analyses of tissue-specific RNA-seq li...
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Veröffentlicht in: | Journal of proteome research 2015-10, Vol.14 (10), p.4223-4231 |
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creator | Chaw, Ro Crystal Correa-Garhwal, Sandra M Clarke, Thomas H Ayoub, Nadia A Hayashi, Cheryl Y |
description | Spider silk research has largely focused on spidroins, proteins that are the primary components of spider silk fibers. Although a number of spidroins have been characterized, other types of proteins associated with silk synthesis are virtually unknown. Previous analyses of tissue-specific RNA-seq libraries identified 647 predicted genes that were differentially expressed in silk glands of the Western black widow, Latrodectus hesperus. Only ∼5% of these silk-gland specific transcripts (SSTs) encode spidroins; although the remaining predicted genes presumably encode other proteins associated with silk production, this is mostly unverified. Here, we used proteomic analysis of multiple silk glands and dragline silk fiber to investigate the translation of the differentially expressed genes. We find 48 proteins encoded by the differentially expressed transcripts in L. hesperus major ampullate, minor ampullate, and tubuliform silk glands and detect 17 SST encoded proteins in major ampullate silk fibers. The observed proteins include known silk-related proteins, but most are uncharacterized, with no annotation. These unannotated proteins likely include novel silk-associated proteins. Major and minor ampullate glands have the highest overlap of identified proteins, consistent with their shared, distinctive ampullate shape and the overlapping functions of major and minor ampullate silks. Our study substantiates and prioritizes predictions from differential expression analysis of spider silk gland transcriptomes. |
doi_str_mv | 10.1021/acs.jproteome.5b00353 |
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Although a number of spidroins have been characterized, other types of proteins associated with silk synthesis are virtually unknown. Previous analyses of tissue-specific RNA-seq libraries identified 647 predicted genes that were differentially expressed in silk glands of the Western black widow, Latrodectus hesperus. Only ∼5% of these silk-gland specific transcripts (SSTs) encode spidroins; although the remaining predicted genes presumably encode other proteins associated with silk production, this is mostly unverified. Here, we used proteomic analysis of multiple silk glands and dragline silk fiber to investigate the translation of the differentially expressed genes. We find 48 proteins encoded by the differentially expressed transcripts in L. hesperus major ampullate, minor ampullate, and tubuliform silk glands and detect 17 SST encoded proteins in major ampullate silk fibers. The observed proteins include known silk-related proteins, but most are uncharacterized, with no annotation. These unannotated proteins likely include novel silk-associated proteins. Major and minor ampullate glands have the highest overlap of identified proteins, consistent with their shared, distinctive ampullate shape and the overlapping functions of major and minor ampullate silks. Our study substantiates and prioritizes predictions from differential expression analysis of spider silk gland transcriptomes.</description><identifier>ISSN: 1535-3893</identifier><identifier>EISSN: 1535-3907</identifier><identifier>DOI: 10.1021/acs.jproteome.5b00353</identifier><identifier>PMID: 26302244</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Animals ; Chromatography, Liquid ; Chymotrypsin - chemistry ; Female ; Gene Expression Regulation ; Gene Library ; Insect Proteins - genetics ; Insect Proteins - isolation & purification ; Insect Proteins - metabolism ; Peptide Fragments - analysis ; Proteolysis ; Proteome - genetics ; Proteome - isolation & purification ; Proteome - metabolism ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; Silk - biosynthesis ; Silk - chemistry ; Silk - genetics ; Spiders - genetics ; Spiders - metabolism ; Tandem Mass Spectrometry ; Transcription, Genetic ; Trypsin - chemistry</subject><ispartof>Journal of proteome research, 2015-10, Vol.14 (10), p.4223-4231</ispartof><rights>Copyright © 2015 American Chemical Society</rights><rights>Copyright © 2015 American Chemical Society 2015 American Chemical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a519t-9683adc2ff41d665df107f2da2d9469eaac062c5f535db52d249010192d8c9f83</citedby><cites>FETCH-LOGICAL-a519t-9683adc2ff41d665df107f2da2d9469eaac062c5f535db52d249010192d8c9f83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.5b00353$$EPDF$$P50$$Gacs$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.jproteome.5b00353$$EHTML$$P50$$Gacs$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,2765,27076,27924,27925,56738,56788</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26302244$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chaw, Ro Crystal</creatorcontrib><creatorcontrib>Correa-Garhwal, Sandra M</creatorcontrib><creatorcontrib>Clarke, Thomas H</creatorcontrib><creatorcontrib>Ayoub, Nadia A</creatorcontrib><creatorcontrib>Hayashi, Cheryl Y</creatorcontrib><title>Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers</title><title>Journal of proteome research</title><addtitle>J. Proteome Res</addtitle><description>Spider silk research has largely focused on spidroins, proteins that are the primary components of spider silk fibers. Although a number of spidroins have been characterized, other types of proteins associated with silk synthesis are virtually unknown. Previous analyses of tissue-specific RNA-seq libraries identified 647 predicted genes that were differentially expressed in silk glands of the Western black widow, Latrodectus hesperus. Only ∼5% of these silk-gland specific transcripts (SSTs) encode spidroins; although the remaining predicted genes presumably encode other proteins associated with silk production, this is mostly unverified. Here, we used proteomic analysis of multiple silk glands and dragline silk fiber to investigate the translation of the differentially expressed genes. We find 48 proteins encoded by the differentially expressed transcripts in L. hesperus major ampullate, minor ampullate, and tubuliform silk glands and detect 17 SST encoded proteins in major ampullate silk fibers. The observed proteins include known silk-related proteins, but most are uncharacterized, with no annotation. These unannotated proteins likely include novel silk-associated proteins. Major and minor ampullate glands have the highest overlap of identified proteins, consistent with their shared, distinctive ampullate shape and the overlapping functions of major and minor ampullate silks. Our study substantiates and prioritizes predictions from differential expression analysis of spider silk gland transcriptomes.</description><subject>Animals</subject><subject>Chromatography, Liquid</subject><subject>Chymotrypsin - chemistry</subject><subject>Female</subject><subject>Gene Expression Regulation</subject><subject>Gene Library</subject><subject>Insect Proteins - genetics</subject><subject>Insect Proteins - isolation & purification</subject><subject>Insect Proteins - metabolism</subject><subject>Peptide Fragments - analysis</subject><subject>Proteolysis</subject><subject>Proteome - genetics</subject><subject>Proteome - isolation & purification</subject><subject>Proteome - metabolism</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>Silk - biosynthesis</subject><subject>Silk - chemistry</subject><subject>Silk - genetics</subject><subject>Spiders - genetics</subject><subject>Spiders - metabolism</subject><subject>Tandem Mass Spectrometry</subject><subject>Transcription, Genetic</subject><subject>Trypsin - chemistry</subject><issn>1535-3893</issn><issn>1535-3907</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>N~.</sourceid><sourceid>EIF</sourceid><recordid>eNqFUclOwzAQtRCI_RNAPnJp8RIn8QUJKjapEkgFcbQcL2BI4mCnRfw9hrQVnLiMR3rLzPgBcITRGCOCT6WK49cu-N74xoxZhRBldAPsYkbZiHJUbK76ktMdsBfjK0KYFYhugx2SU0RIlu2C6n6wcApeLpw2rTLQ-gAnvul8a9o-Qm_hrEtQgDNXv8HZZ9u_mOgitME38KKW6g0-Oe0_Bvy6lq2OMBV45SoT4gHYsrKO5nD57oPHq8uHyc1oend9OzmfjiTDvB_xvKRSK2JthnWeM20xKizRkmie5dxIqVBOFLPpKF0xoknGEUaYE10qbku6D84G325eNUartHyQteiCa2T4FF468Rdp3Yt49gvBUMF4RpPBydIg-Pe5ib1oXFSmTgcZP48CF7jkiGdZkahsoKrgYwzGrsdgJL7zESkfsc5HLPNJuuPfO65Vq0ASAQ-EH72fhzZ92T-mXxGkooU</recordid><startdate>20151002</startdate><enddate>20151002</enddate><creator>Chaw, Ro Crystal</creator><creator>Correa-Garhwal, Sandra M</creator><creator>Clarke, Thomas H</creator><creator>Ayoub, Nadia A</creator><creator>Hayashi, Cheryl Y</creator><general>American Chemical Society</general><scope>N~.</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20151002</creationdate><title>Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers</title><author>Chaw, Ro Crystal ; Correa-Garhwal, Sandra M ; Clarke, Thomas H ; Ayoub, Nadia A ; Hayashi, Cheryl Y</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a519t-9683adc2ff41d665df107f2da2d9469eaac062c5f535db52d249010192d8c9f83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animals</topic><topic>Chromatography, Liquid</topic><topic>Chymotrypsin - chemistry</topic><topic>Female</topic><topic>Gene Expression Regulation</topic><topic>Gene Library</topic><topic>Insect Proteins - genetics</topic><topic>Insect Proteins - isolation & purification</topic><topic>Insect Proteins - metabolism</topic><topic>Peptide Fragments - analysis</topic><topic>Proteolysis</topic><topic>Proteome - genetics</topic><topic>Proteome - isolation & purification</topic><topic>Proteome - metabolism</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><topic>Silk - biosynthesis</topic><topic>Silk - chemistry</topic><topic>Silk - genetics</topic><topic>Spiders - genetics</topic><topic>Spiders - metabolism</topic><topic>Tandem Mass Spectrometry</topic><topic>Transcription, Genetic</topic><topic>Trypsin - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chaw, Ro Crystal</creatorcontrib><creatorcontrib>Correa-Garhwal, Sandra M</creatorcontrib><creatorcontrib>Clarke, Thomas H</creatorcontrib><creatorcontrib>Ayoub, Nadia A</creatorcontrib><creatorcontrib>Hayashi, Cheryl Y</creatorcontrib><collection>American Chemical Society (ACS) Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of proteome research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chaw, Ro Crystal</au><au>Correa-Garhwal, Sandra M</au><au>Clarke, Thomas H</au><au>Ayoub, Nadia A</au><au>Hayashi, Cheryl Y</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers</atitle><jtitle>Journal of proteome research</jtitle><addtitle>J. Proteome Res</addtitle><date>2015-10-02</date><risdate>2015</risdate><volume>14</volume><issue>10</issue><spage>4223</spage><epage>4231</epage><pages>4223-4231</pages><issn>1535-3893</issn><eissn>1535-3907</eissn><abstract>Spider silk research has largely focused on spidroins, proteins that are the primary components of spider silk fibers. Although a number of spidroins have been characterized, other types of proteins associated with silk synthesis are virtually unknown. Previous analyses of tissue-specific RNA-seq libraries identified 647 predicted genes that were differentially expressed in silk glands of the Western black widow, Latrodectus hesperus. Only ∼5% of these silk-gland specific transcripts (SSTs) encode spidroins; although the remaining predicted genes presumably encode other proteins associated with silk production, this is mostly unverified. Here, we used proteomic analysis of multiple silk glands and dragline silk fiber to investigate the translation of the differentially expressed genes. We find 48 proteins encoded by the differentially expressed transcripts in L. hesperus major ampullate, minor ampullate, and tubuliform silk glands and detect 17 SST encoded proteins in major ampullate silk fibers. The observed proteins include known silk-related proteins, but most are uncharacterized, with no annotation. These unannotated proteins likely include novel silk-associated proteins. Major and minor ampullate glands have the highest overlap of identified proteins, consistent with their shared, distinctive ampullate shape and the overlapping functions of major and minor ampullate silks. Our study substantiates and prioritizes predictions from differential expression analysis of spider silk gland transcriptomes.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>26302244</pmid><doi>10.1021/acs.jproteome.5b00353</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals Chromatography, Liquid Chymotrypsin - chemistry Female Gene Expression Regulation Gene Library Insect Proteins - genetics Insect Proteins - isolation & purification Insect Proteins - metabolism Peptide Fragments - analysis Proteolysis Proteome - genetics Proteome - isolation & purification Proteome - metabolism RNA, Messenger - genetics RNA, Messenger - metabolism Silk - biosynthesis Silk - chemistry Silk - genetics Spiders - genetics Spiders - metabolism Tandem Mass Spectrometry Transcription, Genetic Trypsin - chemistry |
title | Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers |
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