Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites

is a Gram negative, motile gammaproteobacterium belonging to the order and the family . We isolated strain P3B5 from the phyllosphere of basil plants ( L.). Here we describe the physiology of this microorganism, its full genome sequence, and detailed annotation. The 6.95 Mbp genome contains 6071 pre...

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Veröffentlicht in:Environmental microbiome 2016-09, Vol.11 (1), p.75-75, Article 75
Hauptverfasser: Remus-Emsermann, Mitja N P, Schmid, Michael, Gekenidis, Maria-Theresia, Pelludat, Cosima, Frey, Jürg E, Ahrens, Christian H, Drissner, David
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container_end_page 75
container_issue 1
container_start_page 75
container_title Environmental microbiome
container_volume 11
creator Remus-Emsermann, Mitja N P
Schmid, Michael
Gekenidis, Maria-Theresia
Pelludat, Cosima
Frey, Jürg E
Ahrens, Christian H
Drissner, David
description is a Gram negative, motile gammaproteobacterium belonging to the order and the family . We isolated strain P3B5 from the phyllosphere of basil plants ( L.). Here we describe the physiology of this microorganism, its full genome sequence, and detailed annotation. The 6.95 Mbp genome contains 6071 predicted protein coding sequences and 96 RNA coding sequences. has been the subject of many studies including the investigation of long-chain aliphatic compounds and terpene degradation. Plant leaves are covered by long-chain aliphates making up a waxy layer that is associated with the leaf cuticle. In addition, basil leaves are known to contain high amounts of terpenoid substances, hinting to a potential nutrient niche that might be exploited by . Furthermore, the isolated strain exhibited resistance to several antibiotics. To evaluate the potential of this strain as source of transferable antibiotic resistance genes on raw consumed herbs we therefore investigated if those resistances are encoded on mobile genetic elements. The availability of the genome will be helpful for comparative genomics of the phylogenetically broad pseudomonads, in particular with the sequence of the type strain PRJDB205 not yet publicly available. The genome is discussed with respect to a phyllosphere related lifestyle, aliphate and terpenoid degradation, and antibiotic resistance.
doi_str_mv 10.1186/s40793-016-0190-6
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We isolated strain P3B5 from the phyllosphere of basil plants ( L.). Here we describe the physiology of this microorganism, its full genome sequence, and detailed annotation. The 6.95 Mbp genome contains 6071 predicted protein coding sequences and 96 RNA coding sequences. has been the subject of many studies including the investigation of long-chain aliphatic compounds and terpene degradation. Plant leaves are covered by long-chain aliphates making up a waxy layer that is associated with the leaf cuticle. In addition, basil leaves are known to contain high amounts of terpenoid substances, hinting to a potential nutrient niche that might be exploited by . Furthermore, the isolated strain exhibited resistance to several antibiotics. To evaluate the potential of this strain as source of transferable antibiotic resistance genes on raw consumed herbs we therefore investigated if those resistances are encoded on mobile genetic elements. The availability of the genome will be helpful for comparative genomics of the phylogenetically broad pseudomonads, in particular with the sequence of the type strain PRJDB205 not yet publicly available. 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subjects Extended Genome Report
title Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites
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