Accounting for dropout in xenografted tumour efficacy studies: integrated endpoint analysis, reduced bias and better use of animals
Purpose Xenograft studies are commonly used to assess the efficacy of new compounds and characterise their dose–response relationship. Analysis often involves comparing the final tumour sizes across dose groups. This can cause bias, as often in xenograft studies a tumour burden limit (TBL) is impose...
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Veröffentlicht in: | Cancer chemotherapy and pharmacology 2016-07, Vol.78 (1), p.131-141 |
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description | Purpose
Xenograft studies are commonly used to assess the efficacy of new compounds and characterise their dose–response relationship. Analysis often involves comparing the final tumour sizes across dose groups. This can cause bias, as often in xenograft studies a tumour burden limit (TBL) is imposed for ethical reasons, leading to the animals with the largest tumours being excluded from the final analysis. This means the average tumour size, particularly in the control group, is underestimated, leading to an underestimate of the treatment effect.
Methods
Four methods to account for dropout due to the TBL are proposed, which use all the available data instead of only final observations: modelling, pattern mixture models, treating dropouts as censored using the M3 method and joint modelling of tumour growth and dropout. The methods were applied to both a simulated data set and a real example.
Results
All four proposed methods led to an improvement in the estimate of treatment effect in the simulated data. The joint modelling method performed most strongly, with the censoring method also providing a good estimate of the treatment effect, but with higher uncertainty. In the real data example, the dose–response estimated using the censoring and joint modelling methods was higher than the very flat curve estimated from average final measurements.
Conclusions
Accounting for dropout using the proposed censoring or joint modelling methods allows the treatment effect to be recovered in studies where it may have been obscured due to dropout caused by the TBL. |
doi_str_mv | 10.1007/s00280-016-3059-x |
format | Article |
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Xenograft studies are commonly used to assess the efficacy of new compounds and characterise their dose–response relationship. Analysis often involves comparing the final tumour sizes across dose groups. This can cause bias, as often in xenograft studies a tumour burden limit (TBL) is imposed for ethical reasons, leading to the animals with the largest tumours being excluded from the final analysis. This means the average tumour size, particularly in the control group, is underestimated, leading to an underestimate of the treatment effect.
Methods
Four methods to account for dropout due to the TBL are proposed, which use all the available data instead of only final observations: modelling, pattern mixture models, treating dropouts as censored using the M3 method and joint modelling of tumour growth and dropout. The methods were applied to both a simulated data set and a real example.
Results
All four proposed methods led to an improvement in the estimate of treatment effect in the simulated data. The joint modelling method performed most strongly, with the censoring method also providing a good estimate of the treatment effect, but with higher uncertainty. In the real data example, the dose–response estimated using the censoring and joint modelling methods was higher than the very flat curve estimated from average final measurements.
Conclusions
Accounting for dropout using the proposed censoring or joint modelling methods allows the treatment effect to be recovered in studies where it may have been obscured due to dropout caused by the TBL.</description><identifier>ISSN: 0344-5704</identifier><identifier>EISSN: 1432-0843</identifier><identifier>DOI: 10.1007/s00280-016-3059-x</identifier><identifier>PMID: 27220867</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Animals ; Antineoplastic Agents - administration & dosage ; Bias ; Cancer Research ; data collection ; dose response ; Dose-Response Relationship, Drug ; Endpoint Determination ; ethics ; Humans ; Medicine ; Medicine & Public Health ; Mice ; Models, Theoretical ; neoplasms ; Neoplasms - drug therapy ; Neoplasms - pathology ; Oncology ; Original ; Original Article ; Patient Dropouts - statistics & numerical data ; Pharmacology/Toxicology ; Research Design ; Tumor Burden ; Uncertainty ; Xenograft Model Antitumor Assays - methods ; xenotransplantation</subject><ispartof>Cancer chemotherapy and pharmacology, 2016-07, Vol.78 (1), p.131-141</ispartof><rights>The Author(s) 2016</rights><rights>Springer-Verlag Berlin Heidelberg 2016</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c536t-98de9a2c4d4c72fafe5948592cea3d86a79864df38449afb0c71edac748f451b3</citedby><cites>FETCH-LOGICAL-c536t-98de9a2c4d4c72fafe5948592cea3d86a79864df38449afb0c71edac748f451b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00280-016-3059-x$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00280-016-3059-x$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27220867$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Martin, Emma C.</creatorcontrib><creatorcontrib>Aarons, Leon</creatorcontrib><creatorcontrib>Yates, James W. T.</creatorcontrib><title>Accounting for dropout in xenografted tumour efficacy studies: integrated endpoint analysis, reduced bias and better use of animals</title><title>Cancer chemotherapy and pharmacology</title><addtitle>Cancer Chemother Pharmacol</addtitle><addtitle>Cancer Chemother Pharmacol</addtitle><description>Purpose
Xenograft studies are commonly used to assess the efficacy of new compounds and characterise their dose–response relationship. Analysis often involves comparing the final tumour sizes across dose groups. This can cause bias, as often in xenograft studies a tumour burden limit (TBL) is imposed for ethical reasons, leading to the animals with the largest tumours being excluded from the final analysis. This means the average tumour size, particularly in the control group, is underestimated, leading to an underestimate of the treatment effect.
Methods
Four methods to account for dropout due to the TBL are proposed, which use all the available data instead of only final observations: modelling, pattern mixture models, treating dropouts as censored using the M3 method and joint modelling of tumour growth and dropout. The methods were applied to both a simulated data set and a real example.
Results
All four proposed methods led to an improvement in the estimate of treatment effect in the simulated data. The joint modelling method performed most strongly, with the censoring method also providing a good estimate of the treatment effect, but with higher uncertainty. In the real data example, the dose–response estimated using the censoring and joint modelling methods was higher than the very flat curve estimated from average final measurements.
Conclusions
Accounting for dropout using the proposed censoring or joint modelling methods allows the treatment effect to be recovered in studies where it may have been obscured due to dropout caused by the TBL.</description><subject>Animals</subject><subject>Antineoplastic Agents - administration & dosage</subject><subject>Bias</subject><subject>Cancer Research</subject><subject>data collection</subject><subject>dose response</subject><subject>Dose-Response Relationship, Drug</subject><subject>Endpoint Determination</subject><subject>ethics</subject><subject>Humans</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Mice</subject><subject>Models, Theoretical</subject><subject>neoplasms</subject><subject>Neoplasms - drug therapy</subject><subject>Neoplasms - pathology</subject><subject>Oncology</subject><subject>Original</subject><subject>Original Article</subject><subject>Patient Dropouts - statistics & numerical data</subject><subject>Pharmacology/Toxicology</subject><subject>Research Design</subject><subject>Tumor Burden</subject><subject>Uncertainty</subject><subject>Xenograft Model Antitumor Assays - methods</subject><subject>xenotransplantation</subject><issn>0344-5704</issn><issn>1432-0843</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkk2LUzEUhoMoTqf6A9xIwI0Lr-br3uS6EIbBUWHAja5DmpzUDG1S8yHt2j9uSsdhFMTVSc558ubkzUHoGSWvKSHyTSGEKTIQOg2cjPOwf4AWVHA2ECX4Q7QgXIhhlEScofNSbgghgnL-GJ0xyRhRk1ygnxfWphZriGvsU8Yup11qFYeI9xDTOhtfweHatqllDN4Ha-wBl9pcgPK2cxU6dGQgul3qe2yi2RxKKK9wBtdsL62CKT3dF1ArZNwK4OR7JmzNpjxBj3wP8PQ2LtHXq_dfLj8O158_fLq8uB7syKc6zMrBbJgVTljJvPEwzkKNM7NguFOTkbOahPNcCTEbvyJWUnDGSqG8GOmKL9G7k-6urbbgLMSazUbvcu8iH3QyQf9ZieGbXqcfWsyM0u7cEr28Fcjpe4NS9TYUC5uNiZBa0ZyOfBSSEfpflKruv1JiPKq--Au96V53Dzsl51kwSZTsFD1RNqdSMvi7vinRx2nQp2nQfRr0cRr0vp95fv_Bdyd-f38H2AkovRTXkO9d_U_VX_cUw5c</recordid><startdate>20160701</startdate><enddate>20160701</enddate><creator>Martin, Emma C.</creator><creator>Aarons, Leon</creator><creator>Yates, James W. T.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7U7</scope><scope>C1K</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope></search><sort><creationdate>20160701</creationdate><title>Accounting for dropout in xenografted tumour efficacy studies: integrated endpoint analysis, reduced bias and better use of animals</title><author>Martin, Emma C. ; Aarons, Leon ; Yates, James W. T.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c536t-98de9a2c4d4c72fafe5948592cea3d86a79864df38449afb0c71edac748f451b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Animals</topic><topic>Antineoplastic Agents - administration & dosage</topic><topic>Bias</topic><topic>Cancer Research</topic><topic>data collection</topic><topic>dose response</topic><topic>Dose-Response Relationship, Drug</topic><topic>Endpoint Determination</topic><topic>ethics</topic><topic>Humans</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Mice</topic><topic>Models, Theoretical</topic><topic>neoplasms</topic><topic>Neoplasms - drug therapy</topic><topic>Neoplasms - pathology</topic><topic>Oncology</topic><topic>Original</topic><topic>Original Article</topic><topic>Patient Dropouts - statistics & numerical data</topic><topic>Pharmacology/Toxicology</topic><topic>Research Design</topic><topic>Tumor Burden</topic><topic>Uncertainty</topic><topic>Xenograft Model Antitumor Assays - methods</topic><topic>xenotransplantation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Martin, Emma C.</creatorcontrib><creatorcontrib>Aarons, Leon</creatorcontrib><creatorcontrib>Yates, James W. 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T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Accounting for dropout in xenografted tumour efficacy studies: integrated endpoint analysis, reduced bias and better use of animals</atitle><jtitle>Cancer chemotherapy and pharmacology</jtitle><stitle>Cancer Chemother Pharmacol</stitle><addtitle>Cancer Chemother Pharmacol</addtitle><date>2016-07-01</date><risdate>2016</risdate><volume>78</volume><issue>1</issue><spage>131</spage><epage>141</epage><pages>131-141</pages><issn>0344-5704</issn><eissn>1432-0843</eissn><abstract>Purpose
Xenograft studies are commonly used to assess the efficacy of new compounds and characterise their dose–response relationship. Analysis often involves comparing the final tumour sizes across dose groups. This can cause bias, as often in xenograft studies a tumour burden limit (TBL) is imposed for ethical reasons, leading to the animals with the largest tumours being excluded from the final analysis. This means the average tumour size, particularly in the control group, is underestimated, leading to an underestimate of the treatment effect.
Methods
Four methods to account for dropout due to the TBL are proposed, which use all the available data instead of only final observations: modelling, pattern mixture models, treating dropouts as censored using the M3 method and joint modelling of tumour growth and dropout. The methods were applied to both a simulated data set and a real example.
Results
All four proposed methods led to an improvement in the estimate of treatment effect in the simulated data. The joint modelling method performed most strongly, with the censoring method also providing a good estimate of the treatment effect, but with higher uncertainty. In the real data example, the dose–response estimated using the censoring and joint modelling methods was higher than the very flat curve estimated from average final measurements.
Conclusions
Accounting for dropout using the proposed censoring or joint modelling methods allows the treatment effect to be recovered in studies where it may have been obscured due to dropout caused by the TBL.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>27220867</pmid><doi>10.1007/s00280-016-3059-x</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals Antineoplastic Agents - administration & dosage Bias Cancer Research data collection dose response Dose-Response Relationship, Drug Endpoint Determination ethics Humans Medicine Medicine & Public Health Mice Models, Theoretical neoplasms Neoplasms - drug therapy Neoplasms - pathology Oncology Original Original Article Patient Dropouts - statistics & numerical data Pharmacology/Toxicology Research Design Tumor Burden Uncertainty Xenograft Model Antitumor Assays - methods xenotransplantation |
title | Accounting for dropout in xenografted tumour efficacy studies: integrated endpoint analysis, reduced bias and better use of animals |
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