High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes . Strain GH29-5 T (DSM 17707 T ) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5 T is part of the G enomic E ncyclopedia of B acteria and A rchaea project. The 2,880...

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Veröffentlicht in:Environmental microbiome 2016-06, Vol.11 (1), Article 42
Hauptverfasser: Tashkandy, Nisreen, Sabban, Sari, Fakieh, Mohammad, Meier-Kolthoff, Jan P., Huang, Sixing, Tindall, Brian J., Rohde, Manfred, Baeshen, Mohammed N., Baeshen, Nabih A., Lapidus, Alla, Copeland, Alex, Pillay, Manoj, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia, Markowitz, Victor, Woyke, Tanja, Göker, Markus, Klenk, Hans-Peter, Kyrpides, Nikos C., Hahnke, Richard L.
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container_issue 1
container_start_page
container_title Environmental microbiome
container_volume 11
creator Tashkandy, Nisreen
Sabban, Sari
Fakieh, Mohammad
Meier-Kolthoff, Jan P.
Huang, Sixing
Tindall, Brian J.
Rohde, Manfred
Baeshen, Mohammed N.
Baeshen, Nabih A.
Lapidus, Alla
Copeland, Alex
Pillay, Manoj
Reddy, T. B. K.
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia
Markowitz, Victor
Woyke, Tanja
Göker, Markus
Klenk, Hans-Peter
Kyrpides, Nikos C.
Hahnke, Richard L.
description Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes . Strain GH29-5 T (DSM 17707 T ) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5 T is part of the G enomic E ncyclopedia of B acteria and A rchaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5 T has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5 T . Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5 T feeds rather on proteins than saccharides and lipids.
doi_str_mv 10.1186/s40793-016-0159-5
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Strain GH29-5 T (DSM 17707 T ) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5 T is part of the G enomic E ncyclopedia of B acteria and A rchaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5 T has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5 T . Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5 T feeds rather on proteins than saccharides and lipids.</abstract><cop>London</cop><pub>BioMed Central</pub><pmid>27313837</pmid><doi>10.1186/s40793-016-0159-5</doi><oa>free_for_read</oa></addata></record>
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subjects Aerobic
Bacteroidetes
BASIC BIOLOGICAL SCIENCES
Carbohydrate active enzyme
Extended Genome Report
Flavobacteriaceae
GEBA
GGDC
Gliding motility
Greenhouse soil
KMG-1
Polysaccharide utilization loci
Tree of Life
title High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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