Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase
The TK2203 protein from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1 (262 residues, 29 kDa) is a putative extradiol dioxygenase catalyzing the cleavage of C–C bonds in catechol derivatives. It contains three metal‐binding residues, but has no significant sequence similarity to prote...
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Veröffentlicht in: | Acta crystallographica. Section F, Structural biology communications Structural biology communications, 2016-06, Vol.72 (6), p.427-433 |
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description | The TK2203 protein from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1 (262 residues, 29 kDa) is a putative extradiol dioxygenase catalyzing the cleavage of C–C bonds in catechol derivatives. It contains three metal‐binding residues, but has no significant sequence similarity to proteins for which structures have been determined. Here, the first crystal structure of the TK2203 protein was determined at 1.41 Å resolution to investigate its functional role. Structure analysis reveals that this protein shares the same fold and catalytic residues as other extradiol dioxygenases, strongly suggesting the same enzymatic activity. Furthermore, the important region contributing to substrate selectivity is discussed.
The crystal structure of the TK2203 protein was determined at 1.41 Å resolution. |
doi_str_mv | 10.1107/S2053230X16006920 |
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The crystal structure of the TK2203 protein was determined at 1.41 Å resolution.</description><identifier>ISSN: 2053-230X</identifier><identifier>EISSN: 2053-230X</identifier><identifier>DOI: 10.1107/S2053230X16006920</identifier><identifier>PMID: 27303894</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Amino Acid Sequence ; archaea ; aromatic compound degradation ; Crystallography, X-Ray ; homodimer ; nonhaem iron ; Oxygenases - chemistry ; Protein Conformation ; Research Communications ; SIRAS ; Thermococcus - chemistry ; Thermococcus kodakarensis ; TK2203</subject><ispartof>Acta crystallographica. Section F, Structural biology communications, 2016-06, Vol.72 (6), p.427-433</ispartof><rights>International Union of Crystallography, 2016</rights><rights>International Union of Crystallography 2016 2016</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4447-8c55e0126468315e4031a8a5ba403ef510a37b76e5082cfa8cc713b700d6554c3</citedby><cites>FETCH-LOGICAL-c4447-8c55e0126468315e4031a8a5ba403ef510a37b76e5082cfa8cc713b700d6554c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909241/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909241/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,1411,27901,27902,45550,45551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27303894$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nishitani, Yuichi</creatorcontrib><creatorcontrib>Simons, Jan-Robert</creatorcontrib><creatorcontrib>Kanai, Tamotsu</creatorcontrib><creatorcontrib>Atomi, Haruyuki</creatorcontrib><creatorcontrib>Miki, Kunio</creatorcontrib><title>Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase</title><title>Acta crystallographica. Section F, Structural biology communications</title><addtitle>Acta Cryst. F</addtitle><description>The TK2203 protein from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1 (262 residues, 29 kDa) is a putative extradiol dioxygenase catalyzing the cleavage of C–C bonds in catechol derivatives. It contains three metal‐binding residues, but has no significant sequence similarity to proteins for which structures have been determined. Here, the first crystal structure of the TK2203 protein was determined at 1.41 Å resolution to investigate its functional role. Structure analysis reveals that this protein shares the same fold and catalytic residues as other extradiol dioxygenases, strongly suggesting the same enzymatic activity. Furthermore, the important region contributing to substrate selectivity is discussed.
The crystal structure of the TK2203 protein was determined at 1.41 Å resolution.</description><subject>Amino Acid Sequence</subject><subject>archaea</subject><subject>aromatic compound degradation</subject><subject>Crystallography, X-Ray</subject><subject>homodimer</subject><subject>nonhaem iron</subject><subject>Oxygenases - chemistry</subject><subject>Protein Conformation</subject><subject>Research Communications</subject><subject>SIRAS</subject><subject>Thermococcus - chemistry</subject><subject>Thermococcus kodakarensis</subject><subject>TK2203</subject><issn>2053-230X</issn><issn>2053-230X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1vEzEQhlcIRKvSH8AF-ciBpeOv9e4FqYqa0g8VIYJSTpbjzDYmu-tge0vy77tR2qgVBy4zo_H7vB7NZNl7Cp8pBXXyg4HkjMMtLQCKisGr7HDbyre918_qg-w4xt8AsMWoqt5mB0xx4GUlDrPFKGxiMg2JKfQ29QGJr0laIJlcMQacrIJP6DpSB9-SyQJD6623to9k6edmaQJ20cVPxJBVn0xy90hwnYKZO9-QIaw3d9iZiO-yN7VpIh4_5qPs5_hsMvqaX387vxidXudWCKHy0kqJQFkhipJTiQI4NaWRMzNUWEsKhquZKlBCyWxtSmsV5TMFMC-kFJYfZV92vqt-1uLcYjcM0-hVcK0JG-2N0y9fOrfQd_5eiwoqJuhg8PHRIPg_PcakWxctNo3p0PdRDxtUZVFWhRikdCe1wccYsN5_Q0Fvt63_OdLAfHg-3554OskgqHaCv67Bzf8d9emvMbuZSuBqYPMd62LC9Z41YakLxZXU05tzfXt5NS6n36da8geo1K12</recordid><startdate>201606</startdate><enddate>201606</enddate><creator>Nishitani, Yuichi</creator><creator>Simons, Jan-Robert</creator><creator>Kanai, Tamotsu</creator><creator>Atomi, Haruyuki</creator><creator>Miki, Kunio</creator><general>International Union of Crystallography</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201606</creationdate><title>Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase</title><author>Nishitani, Yuichi ; Simons, Jan-Robert ; Kanai, Tamotsu ; Atomi, Haruyuki ; Miki, Kunio</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4447-8c55e0126468315e4031a8a5ba403ef510a37b76e5082cfa8cc713b700d6554c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Amino Acid Sequence</topic><topic>archaea</topic><topic>aromatic compound degradation</topic><topic>Crystallography, X-Ray</topic><topic>homodimer</topic><topic>nonhaem iron</topic><topic>Oxygenases - chemistry</topic><topic>Protein Conformation</topic><topic>Research Communications</topic><topic>SIRAS</topic><topic>Thermococcus - chemistry</topic><topic>Thermococcus kodakarensis</topic><topic>TK2203</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nishitani, Yuichi</creatorcontrib><creatorcontrib>Simons, Jan-Robert</creatorcontrib><creatorcontrib>Kanai, Tamotsu</creatorcontrib><creatorcontrib>Atomi, Haruyuki</creatorcontrib><creatorcontrib>Miki, Kunio</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. Section F, Structural biology communications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nishitani, Yuichi</au><au>Simons, Jan-Robert</au><au>Kanai, Tamotsu</au><au>Atomi, Haruyuki</au><au>Miki, Kunio</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase</atitle><jtitle>Acta crystallographica. Section F, Structural biology communications</jtitle><addtitle>Acta Cryst. F</addtitle><date>2016-06</date><risdate>2016</risdate><volume>72</volume><issue>6</issue><spage>427</spage><epage>433</epage><pages>427-433</pages><issn>2053-230X</issn><eissn>2053-230X</eissn><abstract>The TK2203 protein from the hyperthermophilic archaeon Thermococcus kodakarensis KOD1 (262 residues, 29 kDa) is a putative extradiol dioxygenase catalyzing the cleavage of C–C bonds in catechol derivatives. It contains three metal‐binding residues, but has no significant sequence similarity to proteins for which structures have been determined. Here, the first crystal structure of the TK2203 protein was determined at 1.41 Å resolution to investigate its functional role. Structure analysis reveals that this protein shares the same fold and catalytic residues as other extradiol dioxygenases, strongly suggesting the same enzymatic activity. Furthermore, the important region contributing to substrate selectivity is discussed.
The crystal structure of the TK2203 protein was determined at 1.41 Å resolution.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>27303894</pmid><doi>10.1107/S2053230X16006920</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence archaea aromatic compound degradation Crystallography, X-Ray homodimer nonhaem iron Oxygenases - chemistry Protein Conformation Research Communications SIRAS Thermococcus - chemistry Thermococcus kodakarensis TK2203 |
title | Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase |
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