Deglycosylation of Tropheryma whipplei biofilm and discrepancies between diagnostic results during Whipple’s disease progression
Whipple’s disease is a systemic infectious disease associated with the bacterium Tropheryma whipplei . Numerous reports have presented puzzling discrepancies between diagnosis methods. We addressed this confusion using fluorescent in situ hybridization and immunofluorescence assays to evaluate 34 du...
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creator | Audoly, Gilles Fenollar, Florence Lagier, Jean-Christophe Lepidi, Hubert Raoult, Didier |
description | Whipple’s disease is a systemic infectious disease associated with the bacterium
Tropheryma whipplei
. Numerous reports have presented puzzling discrepancies between diagnosis methods. We addressed this confusion using fluorescent
in situ
hybridization and immunofluorescence assays to evaluate 34 duodenal biopsies and 1 lymph node biopsy from Whipple’s patients. We showed the presence of bacteria in both CK20
+
epithelial cells and CD68
+
macrophages. Bacteria are found embedded in a biofilm hindering the detection of
T. whipplei
. Only after treatment of biopsies by glycosidases, co-localization of
T. whipplei
RNA/DNA with bacterial proteins was restored. Moreover, using 13 bronchoalveolar lavages and 7 duodenal biopsies, we found that hydrolysis of the biofilm weakened the bacteria, facilitated bacterial DNA extraction and improved the sensitivity of qPCR detection by up to 1000x opening new perspectives for diagnostic and scientific approaches. |
doi_str_mv | 10.1038/srep23883 |
format | Article |
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Tropheryma whipplei
. Numerous reports have presented puzzling discrepancies between diagnosis methods. We addressed this confusion using fluorescent
in situ
hybridization and immunofluorescence assays to evaluate 34 duodenal biopsies and 1 lymph node biopsy from Whipple’s patients. We showed the presence of bacteria in both CK20
+
epithelial cells and CD68
+
macrophages. Bacteria are found embedded in a biofilm hindering the detection of
T. whipplei
. Only after treatment of biopsies by glycosidases, co-localization of
T. whipplei
RNA/DNA with bacterial proteins was restored. Moreover, using 13 bronchoalveolar lavages and 7 duodenal biopsies, we found that hydrolysis of the biofilm weakened the bacteria, facilitated bacterial DNA extraction and improved the sensitivity of qPCR detection by up to 1000x opening new perspectives for diagnostic and scientific approaches.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/srep23883</identifier><identifier>PMID: 27025850</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>13/51 ; 14 ; 14/32 ; 14/63 ; 38 ; 631/326/107 ; 692/4020/1503/1581/257 ; 692/420/254 ; Alveoli ; Anti-Bacterial Agents - pharmacology ; Anti-Bacterial Agents - therapeutic use ; Bacteria ; Bacteriolysis ; Biofilms ; Biopsy ; Bronchus ; Deglycosylation ; Deoxyribonucleic acid ; Disease Progression ; DNA ; Duodenum - microbiology ; Duodenum - pathology ; Epithelial cells ; Fluorescence in situ hybridization ; Glycoside Hydrolases - chemistry ; Glycoside Hydrolases - pharmacology ; Glycosylation ; Human health and pathology ; Humanities and Social Sciences ; Humans ; Hydrolysis ; Immunofluorescence ; Infectious diseases ; Intestinal Mucosa - microbiology ; Intestinal Mucosa - pathology ; Life Sciences ; Localization ; Lymph ; Lymph nodes ; Lymph Nodes - microbiology ; Lymph Nodes - pathology ; Macrophages ; Microscopy, Confocal ; multidisciplinary ; Ribonucleic acid ; RNA ; Science ; Tropheryma - physiology ; Tropheryma whipplei ; Whipple Disease - diagnosis ; Whipple Disease - drug therapy ; Whipple Disease - microbiology ; Whipple's disease</subject><ispartof>Scientific reports, 2016-03, Vol.6 (1), p.23883-23883, Article 23883</ispartof><rights>The Author(s) 2016</rights><rights>Copyright Nature Publishing Group Mar 2016</rights><rights>Attribution</rights><rights>Copyright © 2016, Macmillan Publishers Limited 2016 Macmillan Publishers Limited</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c472t-8d8a7a50719e4dba717796926ea5d376d156d231755f585825986ff543863a5f3</citedby><cites>FETCH-LOGICAL-c472t-8d8a7a50719e4dba717796926ea5d376d156d231755f585825986ff543863a5f3</cites><orcidid>0000-0002-2895-5824 ; 0000-0001-8242-471X ; 0000-0002-7517-0173 ; 0000-0002-0633-5974</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4812295/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4812295/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27923,27924,41119,42188,51575,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27025850$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-01459567$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Audoly, Gilles</creatorcontrib><creatorcontrib>Fenollar, Florence</creatorcontrib><creatorcontrib>Lagier, Jean-Christophe</creatorcontrib><creatorcontrib>Lepidi, Hubert</creatorcontrib><creatorcontrib>Raoult, Didier</creatorcontrib><title>Deglycosylation of Tropheryma whipplei biofilm and discrepancies between diagnostic results during Whipple’s disease progression</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Whipple’s disease is a systemic infectious disease associated with the bacterium
Tropheryma whipplei
. Numerous reports have presented puzzling discrepancies between diagnosis methods. We addressed this confusion using fluorescent
in situ
hybridization and immunofluorescence assays to evaluate 34 duodenal biopsies and 1 lymph node biopsy from Whipple’s patients. We showed the presence of bacteria in both CK20
+
epithelial cells and CD68
+
macrophages. Bacteria are found embedded in a biofilm hindering the detection of
T. whipplei
. Only after treatment of biopsies by glycosidases, co-localization of
T. whipplei
RNA/DNA with bacterial proteins was restored. Moreover, using 13 bronchoalveolar lavages and 7 duodenal biopsies, we found that hydrolysis of the biofilm weakened the bacteria, facilitated bacterial DNA extraction and improved the sensitivity of qPCR detection by up to 1000x opening new perspectives for diagnostic and scientific approaches.</description><subject>13/51</subject><subject>14</subject><subject>14/32</subject><subject>14/63</subject><subject>38</subject><subject>631/326/107</subject><subject>692/4020/1503/1581/257</subject><subject>692/420/254</subject><subject>Alveoli</subject><subject>Anti-Bacterial Agents - pharmacology</subject><subject>Anti-Bacterial Agents - therapeutic use</subject><subject>Bacteria</subject><subject>Bacteriolysis</subject><subject>Biofilms</subject><subject>Biopsy</subject><subject>Bronchus</subject><subject>Deglycosylation</subject><subject>Deoxyribonucleic acid</subject><subject>Disease Progression</subject><subject>DNA</subject><subject>Duodenum - microbiology</subject><subject>Duodenum - pathology</subject><subject>Epithelial cells</subject><subject>Fluorescence in situ hybridization</subject><subject>Glycoside Hydrolases - chemistry</subject><subject>Glycoside Hydrolases - pharmacology</subject><subject>Glycosylation</subject><subject>Human health and pathology</subject><subject>Humanities and Social Sciences</subject><subject>Humans</subject><subject>Hydrolysis</subject><subject>Immunofluorescence</subject><subject>Infectious diseases</subject><subject>Intestinal Mucosa - microbiology</subject><subject>Intestinal Mucosa - pathology</subject><subject>Life Sciences</subject><subject>Localization</subject><subject>Lymph</subject><subject>Lymph nodes</subject><subject>Lymph Nodes - microbiology</subject><subject>Lymph Nodes - pathology</subject><subject>Macrophages</subject><subject>Microscopy, Confocal</subject><subject>multidisciplinary</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Science</subject><subject>Tropheryma - physiology</subject><subject>Tropheryma whipplei</subject><subject>Whipple Disease - diagnosis</subject><subject>Whipple Disease - drug therapy</subject><subject>Whipple Disease - microbiology</subject><subject>Whipple's disease</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNplkktuFDEQhi0EIlHIggsgS2wg0oAf7dcGKQqPII3EJoil5emu7nHUbTd2d6LZIW7B9XISPJowDMEbW-Wv_t_lKoSeU_KGEq7f5gQj41rzR-iYkUosGGfs8cH5CJ3mfE3KEsxU1DxFR0wRJrQgx-jne-j6TR3zpneTjwHHFl-lOK4hbQaHb9d-HHvweOVj6_sBu9Dgxue6mLpQe8h4BdMtQChR14WYJ1_jBHnup4ybOfnQ4W87kbsfv_I2F1wGPKbYFSwXy2foSev6DKf3-wn6-vHD1cXlYvnl0-eL8-WirhSbFrrRTjlBFDVQNSunqFJGGibBiYYr2VAhG8apEqIttWkmjJZtKyquJXei5Sfo3U53nFcDNDWEKbnejskPLm1sdN7-exP82nbxxlaaMmZEEXi9E1g_SLs8X9ptjNBKGCHVDS3sq3uzFL_PkCc7lF-DvncB4pxtebyqtJTKFPTlA_Q6zimUr7BUlxq0Voz-Na9TzKXn7f4FlNjtINj9IBT2xWGle_JP2wtwtgPyuO0QpAPL_9R-A-Juv8M</recordid><startdate>20160330</startdate><enddate>20160330</enddate><creator>Audoly, Gilles</creator><creator>Fenollar, Florence</creator><creator>Lagier, Jean-Christophe</creator><creator>Lepidi, Hubert</creator><creator>Raoult, Didier</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-2895-5824</orcidid><orcidid>https://orcid.org/0000-0001-8242-471X</orcidid><orcidid>https://orcid.org/0000-0002-7517-0173</orcidid><orcidid>https://orcid.org/0000-0002-0633-5974</orcidid></search><sort><creationdate>20160330</creationdate><title>Deglycosylation of Tropheryma whipplei biofilm and discrepancies between diagnostic results during Whipple’s disease progression</title><author>Audoly, Gilles ; Fenollar, Florence ; Lagier, Jean-Christophe ; Lepidi, Hubert ; Raoult, Didier</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c472t-8d8a7a50719e4dba717796926ea5d376d156d231755f585825986ff543863a5f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>13/51</topic><topic>14</topic><topic>14/32</topic><topic>14/63</topic><topic>38</topic><topic>631/326/107</topic><topic>692/4020/1503/1581/257</topic><topic>692/420/254</topic><topic>Alveoli</topic><topic>Anti-Bacterial Agents - pharmacology</topic><topic>Anti-Bacterial Agents - therapeutic use</topic><topic>Bacteria</topic><topic>Bacteriolysis</topic><topic>Biofilms</topic><topic>Biopsy</topic><topic>Bronchus</topic><topic>Deglycosylation</topic><topic>Deoxyribonucleic acid</topic><topic>Disease Progression</topic><topic>DNA</topic><topic>Duodenum - microbiology</topic><topic>Duodenum - pathology</topic><topic>Epithelial cells</topic><topic>Fluorescence in situ hybridization</topic><topic>Glycoside Hydrolases - chemistry</topic><topic>Glycoside Hydrolases - pharmacology</topic><topic>Glycosylation</topic><topic>Human health and pathology</topic><topic>Humanities and Social Sciences</topic><topic>Humans</topic><topic>Hydrolysis</topic><topic>Immunofluorescence</topic><topic>Infectious diseases</topic><topic>Intestinal Mucosa - microbiology</topic><topic>Intestinal Mucosa - pathology</topic><topic>Life Sciences</topic><topic>Localization</topic><topic>Lymph</topic><topic>Lymph nodes</topic><topic>Lymph Nodes - microbiology</topic><topic>Lymph Nodes - pathology</topic><topic>Macrophages</topic><topic>Microscopy, Confocal</topic><topic>multidisciplinary</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Science</topic><topic>Tropheryma - physiology</topic><topic>Tropheryma whipplei</topic><topic>Whipple Disease - diagnosis</topic><topic>Whipple Disease - drug therapy</topic><topic>Whipple Disease - microbiology</topic><topic>Whipple's disease</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Audoly, Gilles</creatorcontrib><creatorcontrib>Fenollar, Florence</creatorcontrib><creatorcontrib>Lagier, Jean-Christophe</creatorcontrib><creatorcontrib>Lepidi, Hubert</creatorcontrib><creatorcontrib>Raoult, Didier</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database (ProQuest)</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Audoly, Gilles</au><au>Fenollar, Florence</au><au>Lagier, Jean-Christophe</au><au>Lepidi, Hubert</au><au>Raoult, Didier</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Deglycosylation of Tropheryma whipplei biofilm and discrepancies between diagnostic results during Whipple’s disease progression</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2016-03-30</date><risdate>2016</risdate><volume>6</volume><issue>1</issue><spage>23883</spage><epage>23883</epage><pages>23883-23883</pages><artnum>23883</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Whipple’s disease is a systemic infectious disease associated with the bacterium
Tropheryma whipplei
. Numerous reports have presented puzzling discrepancies between diagnosis methods. We addressed this confusion using fluorescent
in situ
hybridization and immunofluorescence assays to evaluate 34 duodenal biopsies and 1 lymph node biopsy from Whipple’s patients. We showed the presence of bacteria in both CK20
+
epithelial cells and CD68
+
macrophages. Bacteria are found embedded in a biofilm hindering the detection of
T. whipplei
. Only after treatment of biopsies by glycosidases, co-localization of
T. whipplei
RNA/DNA with bacterial proteins was restored. Moreover, using 13 bronchoalveolar lavages and 7 duodenal biopsies, we found that hydrolysis of the biofilm weakened the bacteria, facilitated bacterial DNA extraction and improved the sensitivity of qPCR detection by up to 1000x opening new perspectives for diagnostic and scientific approaches.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>27025850</pmid><doi>10.1038/srep23883</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-2895-5824</orcidid><orcidid>https://orcid.org/0000-0001-8242-471X</orcidid><orcidid>https://orcid.org/0000-0002-7517-0173</orcidid><orcidid>https://orcid.org/0000-0002-0633-5974</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; DOAJ Directory of Open Access Journals; Springer Nature OA Free Journals; Nature Free; EZB-FREE-00999 freely available EZB journals; PubMed Central; Free Full-Text Journals in Chemistry |
subjects | 13/51 14 14/32 14/63 38 631/326/107 692/4020/1503/1581/257 692/420/254 Alveoli Anti-Bacterial Agents - pharmacology Anti-Bacterial Agents - therapeutic use Bacteria Bacteriolysis Biofilms Biopsy Bronchus Deglycosylation Deoxyribonucleic acid Disease Progression DNA Duodenum - microbiology Duodenum - pathology Epithelial cells Fluorescence in situ hybridization Glycoside Hydrolases - chemistry Glycoside Hydrolases - pharmacology Glycosylation Human health and pathology Humanities and Social Sciences Humans Hydrolysis Immunofluorescence Infectious diseases Intestinal Mucosa - microbiology Intestinal Mucosa - pathology Life Sciences Localization Lymph Lymph nodes Lymph Nodes - microbiology Lymph Nodes - pathology Macrophages Microscopy, Confocal multidisciplinary Ribonucleic acid RNA Science Tropheryma - physiology Tropheryma whipplei Whipple Disease - diagnosis Whipple Disease - drug therapy Whipple Disease - microbiology Whipple's disease |
title | Deglycosylation of Tropheryma whipplei biofilm and discrepancies between diagnostic results during Whipple’s disease progression |
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