A recurrent F8 mutation (c.6046C>T) causing hemophilia A in 8% of northern Italian patients: evidence for a founder effect
Hemophilia A is a heterogeneous hemorrhagic disorder caused by a large number of mutations. Recurrent mutations are rare, except intron 22 and intron 1 inversions. The substitution of a cytosine to a thymine at nucleotide 6046 in F8 gene was identified in a group of Italian patients affected by hemo...
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Veröffentlicht in: | Molecular genetics & genomic medicine 2016-03, Vol.4 (2), p.152-159 |
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description | Hemophilia A is a heterogeneous hemorrhagic disorder caused by a large number of mutations. Recurrent mutations are rare, except intron 22 and intron 1 inversions. The substitution of a cytosine to a thymine at nucleotide 6046 in F8 gene was identified in a group of Italian patients affected by hemophilia A from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. The identification of the same mutation in a restricted population gets to suppose the existence of a founder effect. Intragenic and extragenic polymorphic markers were tested to assess this assumption. A peculiar haplotype in linkage disequilibrium with this recurrent mutation (c.6046C>T) was identified in 71% of patients, supporting a founder effect. This distinctive haplotype was not identified in a control group (Fisher's exact test, P T) was identified in a group of patients from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. A haplotype analysis was performed to investigate the existence of a founder effect associated to the recurrent mutation. The data obtained from haplotype analysis strongly suggested the presence of a founder effect, supporting the existence of a single mutation event. Using DMLE+ software and a mathematical approach, we also estimated the age of this mutation. |
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Among 300 hemophilia A Italian patients screened for F8 gene mutations, a recurrent mutation (c.6046C>T) was identified in a group of patients from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. A haplotype analysis was performed to investigate the existence of a founder effect associated to the recurrent mutation. The data obtained from haplotype analysis strongly suggested the presence of a founder effect, supporting the existence of a single mutation event. Using DMLE+ software and a mathematical approach, we also estimated the age of this mutation.</description><identifier>ISSN: 2324-9269</identifier><identifier>EISSN: 2324-9269</identifier><identifier>DOI: 10.1002/mgg3.189</identifier><identifier>PMID: 27066508</identifier><language>eng</language><publisher>United States: John Wiley & Sons, Inc</publisher><subject>Amino acids ; Chromosomes ; Cytosine ; Disease ; F8 gene ; Founder effect ; haplotype analysis ; Haplotypes ; Hemophilia ; hemophilia A ; Hemorrhage ; Inversions ; Linkage disequilibrium ; Localization ; Mutation ; Nucleotides ; Original ; Polypeptides ; recurrent mutation ; Thrombosis ; Thymine</subject><ispartof>Molecular genetics & genomic medicine, 2016-03, Vol.4 (2), p.152-159</ispartof><rights>2015 The Authors. published by Wiley Periodicals, Inc.</rights><rights>2016 Wiley Periodicals, Inc.</rights><rights>2016. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5279-314817afa000cbe80bed5cde726cdb89a94712930427571b5dce72d5a0f984993</citedby><cites>FETCH-LOGICAL-c5279-314817afa000cbe80bed5cde726cdb89a94712930427571b5dce72d5a0f984993</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799873/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799873/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,1411,11541,27901,27902,45550,45551,46027,46451,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27066508$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Garagiola, Isabella</creatorcontrib><creatorcontrib>Seregni, Sabrina</creatorcontrib><creatorcontrib>Mortarino, Mimosa</creatorcontrib><creatorcontrib>Mancuso, Maria Elisa</creatorcontrib><creatorcontrib>Fasulo, Maria Rosaria</creatorcontrib><creatorcontrib>Notarangelo, Lucia Dora</creatorcontrib><creatorcontrib>Peyvandi, Flora</creatorcontrib><title>A recurrent F8 mutation (c.6046C>T) causing hemophilia A in 8% of northern Italian patients: evidence for a founder effect</title><title>Molecular genetics & genomic medicine</title><addtitle>Mol Genet Genomic Med</addtitle><description>Hemophilia A is a heterogeneous hemorrhagic disorder caused by a large number of mutations. Recurrent mutations are rare, except intron 22 and intron 1 inversions. The substitution of a cytosine to a thymine at nucleotide 6046 in F8 gene was identified in a group of Italian patients affected by hemophilia A from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. The identification of the same mutation in a restricted population gets to suppose the existence of a founder effect. Intragenic and extragenic polymorphic markers were tested to assess this assumption. A peculiar haplotype in linkage disequilibrium with this recurrent mutation (c.6046C>T) was identified in 71% of patients, supporting a founder effect. This distinctive haplotype was not identified in a control group (Fisher's exact test, P < 0.0001), coming from the same geographic region. These data strongly suggested the presence of a founder effect, supporting the existence of a single mutation event. Using DMLE+2.3 software and the mathematical approach described by Bengtsson and Thomson, the inferred age of this mutation is supposed to be about 2325 years (95% CI: 904–5081) ago.
Among 300 hemophilia A Italian patients screened for F8 gene mutations, a recurrent mutation (c.6046C>T) was identified in a group of patients from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. A haplotype analysis was performed to investigate the existence of a founder effect associated to the recurrent mutation. The data obtained from haplotype analysis strongly suggested the presence of a founder effect, supporting the existence of a single mutation event. Using DMLE+ software and a mathematical approach, we also estimated the age of this mutation.</description><subject>Amino acids</subject><subject>Chromosomes</subject><subject>Cytosine</subject><subject>Disease</subject><subject>F8 gene</subject><subject>Founder effect</subject><subject>haplotype analysis</subject><subject>Haplotypes</subject><subject>Hemophilia</subject><subject>hemophilia A</subject><subject>Hemorrhage</subject><subject>Inversions</subject><subject>Linkage disequilibrium</subject><subject>Localization</subject><subject>Mutation</subject><subject>Nucleotides</subject><subject>Original</subject><subject>Polypeptides</subject><subject>recurrent mutation</subject><subject>Thrombosis</subject><subject>Thymine</subject><issn>2324-9269</issn><issn>2324-9269</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>BENPR</sourceid><recordid>eNqNklFrFDEUhYMottSCv0ACItSHWZNMMkl8KCxLuxYqvtTnkMnc2U2ZSdZkplJ_fbO01ioo5iEJnI8Tzs1B6DUlC0oI-zBuNvWCKv0MHbKa8UqzRj9_cj9Axzlfk7KU4rSRL9EBk6RpBFGH6McSJ3BzShAmfK7wOE928jHgE7doCG9Wp1fvsbNz9mGDtzDG3dYP3uIl9gGrdzj2OMQ0bSEFfDHZIgW8Kw7FLn_EcOM7CA5wHxO2ZZ9DBwlD34ObXqEXvR0yHD-cR-jr-dnV6lN1-WV9sVpeVk4wqauackWl7W0J4FpQpIVOuA4ka1zXKm01l5TpmnAmhaSt6FzROmFJrxXXuj5Cp_e-u7kdoahhSnYwu-RHm25NtN78rgS_NZt4Y7jUWsm6GJw8GKT4bYY8mdFnB8NgA8Q5GyoVUZQz1fwXKsqf8D369g_0Os4plEkYxjQRRDNV_4uiUvKSuRby17MuxZwT9I_pKDH7kph9SUwpSUHfPJ3GI_izEgWo7oHvfoDbvxqZz-t1vTe8A_ldwpQ</recordid><startdate>201603</startdate><enddate>201603</enddate><creator>Garagiola, Isabella</creator><creator>Seregni, Sabrina</creator><creator>Mortarino, Mimosa</creator><creator>Mancuso, Maria Elisa</creator><creator>Fasulo, Maria Rosaria</creator><creator>Notarangelo, Lucia Dora</creator><creator>Peyvandi, Flora</creator><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201603</creationdate><title>A recurrent F8 mutation (c.6046C>T) causing hemophilia A in 8% of northern Italian patients: evidence for a founder effect</title><author>Garagiola, Isabella ; Seregni, Sabrina ; Mortarino, Mimosa ; Mancuso, Maria Elisa ; Fasulo, Maria Rosaria ; Notarangelo, Lucia Dora ; Peyvandi, Flora</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5279-314817afa000cbe80bed5cde726cdb89a94712930427571b5dce72d5a0f984993</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Amino acids</topic><topic>Chromosomes</topic><topic>Cytosine</topic><topic>Disease</topic><topic>F8 gene</topic><topic>Founder effect</topic><topic>haplotype analysis</topic><topic>Haplotypes</topic><topic>Hemophilia</topic><topic>hemophilia A</topic><topic>Hemorrhage</topic><topic>Inversions</topic><topic>Linkage disequilibrium</topic><topic>Localization</topic><topic>Mutation</topic><topic>Nucleotides</topic><topic>Original</topic><topic>Polypeptides</topic><topic>recurrent mutation</topic><topic>Thrombosis</topic><topic>Thymine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Garagiola, Isabella</creatorcontrib><creatorcontrib>Seregni, Sabrina</creatorcontrib><creatorcontrib>Mortarino, Mimosa</creatorcontrib><creatorcontrib>Mancuso, Maria Elisa</creatorcontrib><creatorcontrib>Fasulo, Maria Rosaria</creatorcontrib><creatorcontrib>Notarangelo, Lucia Dora</creatorcontrib><creatorcontrib>Peyvandi, Flora</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Molecular genetics & genomic medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Garagiola, Isabella</au><au>Seregni, Sabrina</au><au>Mortarino, Mimosa</au><au>Mancuso, Maria Elisa</au><au>Fasulo, Maria Rosaria</au><au>Notarangelo, Lucia Dora</au><au>Peyvandi, Flora</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A recurrent F8 mutation (c.6046C>T) causing hemophilia A in 8% of northern Italian patients: evidence for a founder effect</atitle><jtitle>Molecular genetics & genomic medicine</jtitle><addtitle>Mol Genet Genomic Med</addtitle><date>2016-03</date><risdate>2016</risdate><volume>4</volume><issue>2</issue><spage>152</spage><epage>159</epage><pages>152-159</pages><issn>2324-9269</issn><eissn>2324-9269</eissn><abstract>Hemophilia A is a heterogeneous hemorrhagic disorder caused by a large number of mutations. Recurrent mutations are rare, except intron 22 and intron 1 inversions. The substitution of a cytosine to a thymine at nucleotide 6046 in F8 gene was identified in a group of Italian patients affected by hemophilia A from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. The identification of the same mutation in a restricted population gets to suppose the existence of a founder effect. Intragenic and extragenic polymorphic markers were tested to assess this assumption. A peculiar haplotype in linkage disequilibrium with this recurrent mutation (c.6046C>T) was identified in 71% of patients, supporting a founder effect. This distinctive haplotype was not identified in a control group (Fisher's exact test, P < 0.0001), coming from the same geographic region. These data strongly suggested the presence of a founder effect, supporting the existence of a single mutation event. Using DMLE+2.3 software and the mathematical approach described by Bengtsson and Thomson, the inferred age of this mutation is supposed to be about 2325 years (95% CI: 904–5081) ago.
Among 300 hemophilia A Italian patients screened for F8 gene mutations, a recurrent mutation (c.6046C>T) was identified in a group of patients from a specific region of Northern Italy with a prevalence of 7.6%. This F8 variant was the second most frequent mutation in our cohort, after the intron 22 inversion. A haplotype analysis was performed to investigate the existence of a founder effect associated to the recurrent mutation. The data obtained from haplotype analysis strongly suggested the presence of a founder effect, supporting the existence of a single mutation event. Using DMLE+ software and a mathematical approach, we also estimated the age of this mutation.</abstract><cop>United States</cop><pub>John Wiley & Sons, Inc</pub><pmid>27066508</pmid><doi>10.1002/mgg3.189</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Chromosomes Cytosine Disease F8 gene Founder effect haplotype analysis Haplotypes Hemophilia hemophilia A Hemorrhage Inversions Linkage disequilibrium Localization Mutation Nucleotides Original Polypeptides recurrent mutation Thrombosis Thymine |
title | A recurrent F8 mutation (c.6046C>T) causing hemophilia A in 8% of northern Italian patients: evidence for a founder effect |
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