Analysis of the Structure and Function of FOX-4 Cephamycinase
Class C β-lactamases poorly hydrolyze cephamycins (e.g., cefoxitin, cefotetan, and moxalactam). In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chro...
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creator | Lefurgy, S T Malashkevich, V N Aguilan, J T Nieves, E Mundorff, E C Biju, B Noel, M A Toro, R Baiwir, D Papp-Wallace, K M Almo, S C Frere, J-M Bou, G Bonomo, R A |
description | Class C β-lactamases poorly hydrolyze cephamycins (e.g., cefoxitin, cefotetan, and moxalactam). In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chromosomal AmpC. To understand the basis for the unique cephamycinase activity in the FOX family, we determined the first X-ray crystal structures of FOX-4, apo enzyme and the acyl-enzyme with its namesake compound, cefoxitin, using the Y150F deacylation-deficient variant. Notably, recombinant expression of N-terminally tagged FOX-4 also yielded an inactive adenylylated enzyme form not previously observed in β-lactamases. The posttranslational modification (PTM), which occurs on the active site Ser64, would not seem to provide a selective advantage, yet might present an opportunity for the design of novel antibacterial drugs. Substantial ligand-induced changes in the enzyme are seen in the acyl-enzyme complex, particularly the R2 loop and helix H10 (P289 to N297), with movement of F293 by 10.3 Å. Taken together, this study provides the first picture of this highly proficient class C cephamycinase, uncovers a novel PTM, and suggests a possible cephamycin resistance mechanism involving repositioning of the substrate due to the presence of S153P, N289P, and N346I substitutions in the ligand binding pocket. |
doi_str_mv | 10.1128/AAC.01887-15 |
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In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chromosomal AmpC. To understand the basis for the unique cephamycinase activity in the FOX family, we determined the first X-ray crystal structures of FOX-4, apo enzyme and the acyl-enzyme with its namesake compound, cefoxitin, using the Y150F deacylation-deficient variant. Notably, recombinant expression of N-terminally tagged FOX-4 also yielded an inactive adenylylated enzyme form not previously observed in β-lactamases. The posttranslational modification (PTM), which occurs on the active site Ser64, would not seem to provide a selective advantage, yet might present an opportunity for the design of novel antibacterial drugs. Substantial ligand-induced changes in the enzyme are seen in the acyl-enzyme complex, particularly the R2 loop and helix H10 (P289 to N297), with movement of F293 by 10.3 Å. Taken together, this study provides the first picture of this highly proficient class C cephamycinase, uncovers a novel PTM, and suggests a possible cephamycin resistance mechanism involving repositioning of the substrate due to the presence of S153P, N289P, and N346I substitutions in the ligand binding pocket.</description><identifier>ISSN: 0066-4804</identifier><identifier>ISSN: 1098-6596</identifier><identifier>EISSN: 1098-6596</identifier><identifier>DOI: 10.1128/AAC.01887-15</identifier><identifier>PMID: 26525784</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Aeromonas caviae ; Aeromonas caviae - drug effects ; Amino Acid Sequence ; Anti-Bacterial Agents ; Anti-Bacterial Agents - metabolism ; Anti-Bacterial Agents - pharmacology ; b-lactam ; b-lactamase ; Bacterial Proteins ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Bacterial Proteins - ultrastructure ; beta-Lactamases ; beta-Lactamases - genetics ; beta-Lactamases - metabolism ; beta-Lactamases - ultrastructure ; Biochemistry, biophysics & molecular biology ; Biochimie, biophysique & biologie moléculaire ; Cefoxitin ; Cefoxitin - metabolism ; Cefoxitin - pharmacology ; cephamycinase ; Crystallography, X-Ray ; Drug Resistance, Multiple, Bacterial ; Drug Resistance, Multiple, Bacterial - genetics ; Escherichia coli Proteins ; Escherichia coli Proteins - genetics ; Escherichia coli Proteins - metabolism ; Escherichia coli Proteins - ultrastructure ; Life sciences ; Mechanisms of Resistance ; Microbial Sensitivity Tests ; Models, Molecular ; Molecular Sequence Data ; Protein Isoforms - genetics ; Protein Isoforms - metabolism ; Protein Isoforms - ultrastructure ; Protein Processing, Post-Translational ; Sciences du vivant ; Sequence Alignment ; Tandem Mass Spectrometry</subject><ispartof>Antimicrobial agents and chemotherapy, 2016-02, Vol.60 (2), p.717-728</ispartof><rights>Copyright © 2016, American Society for Microbiology. All Rights Reserved.</rights><rights>Copyright © 2016, American Society for Microbiology. All Rights Reserved. 2016 American Society for Microbiology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a495t-54ef187404c5a4627839982146fcff6c15735f3ee0372c8ddfad4155e20e8d2d3</citedby><cites>FETCH-LOGICAL-a495t-54ef187404c5a4627839982146fcff6c15735f3ee0372c8ddfad4155e20e8d2d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750714/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750714/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26525784$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lefurgy, S T</creatorcontrib><creatorcontrib>Malashkevich, V N</creatorcontrib><creatorcontrib>Aguilan, J T</creatorcontrib><creatorcontrib>Nieves, E</creatorcontrib><creatorcontrib>Mundorff, E C</creatorcontrib><creatorcontrib>Biju, B</creatorcontrib><creatorcontrib>Noel, M A</creatorcontrib><creatorcontrib>Toro, R</creatorcontrib><creatorcontrib>Baiwir, D</creatorcontrib><creatorcontrib>Papp-Wallace, K M</creatorcontrib><creatorcontrib>Almo, S C</creatorcontrib><creatorcontrib>Frere, J-M</creatorcontrib><creatorcontrib>Bou, G</creatorcontrib><creatorcontrib>Bonomo, R A</creatorcontrib><title>Analysis of the Structure and Function of FOX-4 Cephamycinase</title><title>Antimicrobial agents and chemotherapy</title><addtitle>Antimicrob Agents Chemother</addtitle><addtitle>Antimicrob Agents Chemother</addtitle><description>Class C β-lactamases poorly hydrolyze cephamycins (e.g., cefoxitin, cefotetan, and moxalactam). In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chromosomal AmpC. To understand the basis for the unique cephamycinase activity in the FOX family, we determined the first X-ray crystal structures of FOX-4, apo enzyme and the acyl-enzyme with its namesake compound, cefoxitin, using the Y150F deacylation-deficient variant. Notably, recombinant expression of N-terminally tagged FOX-4 also yielded an inactive adenylylated enzyme form not previously observed in β-lactamases. The posttranslational modification (PTM), which occurs on the active site Ser64, would not seem to provide a selective advantage, yet might present an opportunity for the design of novel antibacterial drugs. Substantial ligand-induced changes in the enzyme are seen in the acyl-enzyme complex, particularly the R2 loop and helix H10 (P289 to N297), with movement of F293 by 10.3 Å. Taken together, this study provides the first picture of this highly proficient class C cephamycinase, uncovers a novel PTM, and suggests a possible cephamycin resistance mechanism involving repositioning of the substrate due to the presence of S153P, N289P, and N346I substitutions in the ligand binding pocket.</description><subject>Aeromonas caviae</subject><subject>Aeromonas caviae - drug effects</subject><subject>Amino Acid Sequence</subject><subject>Anti-Bacterial Agents</subject><subject>Anti-Bacterial Agents - metabolism</subject><subject>Anti-Bacterial Agents - pharmacology</subject><subject>b-lactam</subject><subject>b-lactamase</subject><subject>Bacterial Proteins</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Bacterial Proteins - ultrastructure</subject><subject>beta-Lactamases</subject><subject>beta-Lactamases - genetics</subject><subject>beta-Lactamases - metabolism</subject><subject>beta-Lactamases - ultrastructure</subject><subject>Biochemistry, biophysics & molecular biology</subject><subject>Biochimie, biophysique & biologie moléculaire</subject><subject>Cefoxitin</subject><subject>Cefoxitin - metabolism</subject><subject>Cefoxitin - pharmacology</subject><subject>cephamycinase</subject><subject>Crystallography, X-Ray</subject><subject>Drug Resistance, Multiple, Bacterial</subject><subject>Drug Resistance, Multiple, Bacterial - genetics</subject><subject>Escherichia coli Proteins</subject><subject>Escherichia coli Proteins - genetics</subject><subject>Escherichia coli Proteins - metabolism</subject><subject>Escherichia coli Proteins - ultrastructure</subject><subject>Life sciences</subject><subject>Mechanisms of Resistance</subject><subject>Microbial Sensitivity Tests</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Protein Isoforms - genetics</subject><subject>Protein Isoforms - metabolism</subject><subject>Protein Isoforms - ultrastructure</subject><subject>Protein Processing, Post-Translational</subject><subject>Sciences du vivant</subject><subject>Sequence Alignment</subject><subject>Tandem Mass Spectrometry</subject><issn>0066-4804</issn><issn>1098-6596</issn><issn>1098-6596</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc-LEzEUx4Mobl29eZY5KjhrfidzUCjFqrCwBxW8PdLMS5tlZlKTmYX-907bddGD4CkJ7_s-j7wPIS8ZvWKM23fL5eqKMmtNzdQjsmC0sbVWjX5MFpRqXUtL5QV5Vsotnd-qoU_JBdeKK2PlgrxfDq47lFiqFKpxh9XXMU9-nDJWbmir9TT4MabhWF3f_KhltcL9zvUHHwdX8Dl5ElxX8MX9eUm-rz9-W32ur28-fVktr2snGzXWSmJg1kgqvXJSc2NF01jOpA4-BO2ZMkIFgUiF4d62bXCtZEohp2hb3opL8uHM3U-bHluPw5hdB_sce5cPkFyEvytD3ME23YE0ihomZ4A4A7qIW4SUNxHu-KnxdJ-6LTgPGwTOtYV5nZyLuev1_dicfk5YRuhj8dh1bsA0FWBGW2Uta-j_RJk0gtEj9e056nMqJWN4-AejcFQKs1I4KQWm5vibc9yVnsNtmvJsrPwr--rPPT2Af_sWvwAWuqaq</recordid><startdate>20160201</startdate><enddate>20160201</enddate><creator>Lefurgy, S T</creator><creator>Malashkevich, V N</creator><creator>Aguilan, J T</creator><creator>Nieves, E</creator><creator>Mundorff, E C</creator><creator>Biju, B</creator><creator>Noel, M A</creator><creator>Toro, R</creator><creator>Baiwir, D</creator><creator>Papp-Wallace, K M</creator><creator>Almo, S C</creator><creator>Frere, J-M</creator><creator>Bou, G</creator><creator>Bonomo, R A</creator><general>American Society for Microbiology</general><general>American Society for Microbiology (ASM)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>Q33</scope><scope>5PM</scope></search><sort><creationdate>20160201</creationdate><title>Analysis of the Structure and Function of FOX-4 Cephamycinase</title><author>Lefurgy, S T ; Malashkevich, V N ; Aguilan, J T ; Nieves, E ; Mundorff, E C ; Biju, B ; Noel, M A ; Toro, R ; Baiwir, D ; Papp-Wallace, K M ; Almo, S C ; Frere, J-M ; Bou, G ; Bonomo, R A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a495t-54ef187404c5a4627839982146fcff6c15735f3ee0372c8ddfad4155e20e8d2d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Aeromonas caviae</topic><topic>Aeromonas caviae - drug effects</topic><topic>Amino Acid Sequence</topic><topic>Anti-Bacterial Agents</topic><topic>Anti-Bacterial Agents - metabolism</topic><topic>Anti-Bacterial Agents - pharmacology</topic><topic>b-lactam</topic><topic>b-lactamase</topic><topic>Bacterial Proteins</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Bacterial Proteins - ultrastructure</topic><topic>beta-Lactamases</topic><topic>beta-Lactamases - genetics</topic><topic>beta-Lactamases - metabolism</topic><topic>beta-Lactamases - ultrastructure</topic><topic>Biochemistry, biophysics & molecular biology</topic><topic>Biochimie, biophysique & biologie moléculaire</topic><topic>Cefoxitin</topic><topic>Cefoxitin - metabolism</topic><topic>Cefoxitin - pharmacology</topic><topic>cephamycinase</topic><topic>Crystallography, X-Ray</topic><topic>Drug Resistance, Multiple, Bacterial</topic><topic>Drug Resistance, Multiple, Bacterial - genetics</topic><topic>Escherichia coli Proteins</topic><topic>Escherichia coli Proteins - genetics</topic><topic>Escherichia coli Proteins - metabolism</topic><topic>Escherichia coli Proteins - ultrastructure</topic><topic>Life sciences</topic><topic>Mechanisms of Resistance</topic><topic>Microbial Sensitivity Tests</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Protein Isoforms - genetics</topic><topic>Protein Isoforms - metabolism</topic><topic>Protein Isoforms - ultrastructure</topic><topic>Protein Processing, Post-Translational</topic><topic>Sciences du vivant</topic><topic>Sequence Alignment</topic><topic>Tandem Mass Spectrometry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lefurgy, S T</creatorcontrib><creatorcontrib>Malashkevich, V N</creatorcontrib><creatorcontrib>Aguilan, J T</creatorcontrib><creatorcontrib>Nieves, E</creatorcontrib><creatorcontrib>Mundorff, E C</creatorcontrib><creatorcontrib>Biju, B</creatorcontrib><creatorcontrib>Noel, M A</creatorcontrib><creatorcontrib>Toro, R</creatorcontrib><creatorcontrib>Baiwir, D</creatorcontrib><creatorcontrib>Papp-Wallace, K M</creatorcontrib><creatorcontrib>Almo, S C</creatorcontrib><creatorcontrib>Frere, J-M</creatorcontrib><creatorcontrib>Bou, G</creatorcontrib><creatorcontrib>Bonomo, R A</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Université de Liège - Open Repository and Bibliography (ORBI)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Antimicrobial agents and chemotherapy</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lefurgy, S T</au><au>Malashkevich, V N</au><au>Aguilan, J T</au><au>Nieves, E</au><au>Mundorff, E C</au><au>Biju, B</au><au>Noel, M A</au><au>Toro, R</au><au>Baiwir, D</au><au>Papp-Wallace, K M</au><au>Almo, S C</au><au>Frere, J-M</au><au>Bou, G</au><au>Bonomo, R A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis of the Structure and Function of FOX-4 Cephamycinase</atitle><jtitle>Antimicrobial agents and chemotherapy</jtitle><stitle>Antimicrob Agents Chemother</stitle><addtitle>Antimicrob Agents Chemother</addtitle><date>2016-02-01</date><risdate>2016</risdate><volume>60</volume><issue>2</issue><spage>717</spage><epage>728</epage><pages>717-728</pages><issn>0066-4804</issn><issn>1098-6596</issn><eissn>1098-6596</eissn><abstract>Class C β-lactamases poorly hydrolyze cephamycins (e.g., cefoxitin, cefotetan, and moxalactam). In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chromosomal AmpC. To understand the basis for the unique cephamycinase activity in the FOX family, we determined the first X-ray crystal structures of FOX-4, apo enzyme and the acyl-enzyme with its namesake compound, cefoxitin, using the Y150F deacylation-deficient variant. Notably, recombinant expression of N-terminally tagged FOX-4 also yielded an inactive adenylylated enzyme form not previously observed in β-lactamases. The posttranslational modification (PTM), which occurs on the active site Ser64, would not seem to provide a selective advantage, yet might present an opportunity for the design of novel antibacterial drugs. Substantial ligand-induced changes in the enzyme are seen in the acyl-enzyme complex, particularly the R2 loop and helix H10 (P289 to N297), with movement of F293 by 10.3 Å. Taken together, this study provides the first picture of this highly proficient class C cephamycinase, uncovers a novel PTM, and suggests a possible cephamycin resistance mechanism involving repositioning of the substrate due to the presence of S153P, N289P, and N346I substitutions in the ligand binding pocket.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>26525784</pmid><doi>10.1128/AAC.01887-15</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Aeromonas caviae Aeromonas caviae - drug effects Amino Acid Sequence Anti-Bacterial Agents Anti-Bacterial Agents - metabolism Anti-Bacterial Agents - pharmacology b-lactam b-lactamase Bacterial Proteins Bacterial Proteins - genetics Bacterial Proteins - metabolism Bacterial Proteins - ultrastructure beta-Lactamases beta-Lactamases - genetics beta-Lactamases - metabolism beta-Lactamases - ultrastructure Biochemistry, biophysics & molecular biology Biochimie, biophysique & biologie moléculaire Cefoxitin Cefoxitin - metabolism Cefoxitin - pharmacology cephamycinase Crystallography, X-Ray Drug Resistance, Multiple, Bacterial Drug Resistance, Multiple, Bacterial - genetics Escherichia coli Proteins Escherichia coli Proteins - genetics Escherichia coli Proteins - metabolism Escherichia coli Proteins - ultrastructure Life sciences Mechanisms of Resistance Microbial Sensitivity Tests Models, Molecular Molecular Sequence Data Protein Isoforms - genetics Protein Isoforms - metabolism Protein Isoforms - ultrastructure Protein Processing, Post-Translational Sciences du vivant Sequence Alignment Tandem Mass Spectrometry |
title | Analysis of the Structure and Function of FOX-4 Cephamycinase |
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