Streptomyces thermoautotrophicus does not fix nitrogen
Streptomyces thermoautotrophicus UBT1 has been described as a moderately thermophilic chemolithoautotroph with a novel nitrogenase enzyme that is oxygen-insensitive. We have cultured the UBT1 strain and have isolated two new strains (H1 and P1-2) of very similar phenotypic and genetic characters. Th...
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| Veröffentlicht in: | Scientific reports 2016-02, Vol.6 (1), p.20086-20086, Article 20086 |
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| creator | MacKellar, Drew Lieber, Lucas Norman, Jeffrey S. Bolger, Anthony Tobin, Cory Murray, James W. Oksaksin, Mehtap Chang, Roger L. Ford, Tyler J. Nguyen, Peter Q. Woodward, Jimmy Permingeat, Hugo R. Joshi, Neel S. Silver, Pamela A. Usadel, Björn Rutherford, Alfred W. Friesen, Maren L. Prell, Jürgen |
| description | Streptomyces thermoautotrophicus
UBT1 has been described as a moderately thermophilic chemolithoautotroph with a novel nitrogenase enzyme that is oxygen-insensitive. We have cultured the UBT1 strain and have isolated two new strains (H1 and P1-2) of very similar phenotypic and genetic characters. These strains show minimal growth on ammonium-free media and fail to incorporate isotopically labeled N
2
gas into biomass in multiple independent assays. The
sdn
genes previously published as the putative nitrogenase of
S. thermoautotrophicus
have little similarity to anything found in draft genome sequences, published here, for strains H1 and UBT1, but share >99% nucleotide identity with genes from
Hydrogenibacillus schlegelii
, a draft genome for which is also presented here.
H. schlegelii
similarly lacks nitrogenase genes and is a non-diazotroph. We propose reclassification of the species containing strains UBT1, H1 and P1-2 as a non-Streptomycete, non-diazotrophic, facultative chemolithoautotroph and conclude that the existence of the previously proposed oxygen-tolerant nitrogenase is extremely unlikely. |
| doi_str_mv | 10.1038/srep20086 |
| format | Article |
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UBT1 has been described as a moderately thermophilic chemolithoautotroph with a novel nitrogenase enzyme that is oxygen-insensitive. We have cultured the UBT1 strain and have isolated two new strains (H1 and P1-2) of very similar phenotypic and genetic characters. These strains show minimal growth on ammonium-free media and fail to incorporate isotopically labeled N
2
gas into biomass in multiple independent assays. The
sdn
genes previously published as the putative nitrogenase of
S. thermoautotrophicus
have little similarity to anything found in draft genome sequences, published here, for strains H1 and UBT1, but share >99% nucleotide identity with genes from
Hydrogenibacillus schlegelii
, a draft genome for which is also presented here.
H. schlegelii
similarly lacks nitrogenase genes and is a non-diazotroph. We propose reclassification of the species containing strains UBT1, H1 and P1-2 as a non-Streptomycete, non-diazotrophic, facultative chemolithoautotroph and conclude that the existence of the previously proposed oxygen-tolerant nitrogenase is extremely unlikely.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/srep20086</identifier><identifier>PMID: 26833023</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>45 ; 45/23 ; 631/326/1320 ; 631/326/47 ; 631/45 ; Ammonium ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Biomass ; Genes, Bacterial ; Genomes ; Humanities and Social Sciences ; Isotope Labeling ; multidisciplinary ; Nitrogen - metabolism ; Nitrogen Fixation ; Nitrogenase ; Nitrogenase - genetics ; Nitrogenase - metabolism ; Oxygen ; Reclassification ; Science ; Sequence Homology, Nucleic Acid ; Streptomyces - genetics ; Streptomyces - metabolism</subject><ispartof>Scientific reports, 2016-02, Vol.6 (1), p.20086-20086, Article 20086</ispartof><rights>The Author(s) 2016</rights><rights>Copyright Nature Publishing Group Feb 2016</rights><rights>Copyright © 2016, Macmillan Publishers Limited 2016 Macmillan Publishers Limited</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c438t-9ebe98cf5b555f622b8584f3ea368abc837b470f48915ed9f41133766fa946d63</citedby><cites>FETCH-LOGICAL-c438t-9ebe98cf5b555f622b8584f3ea368abc837b470f48915ed9f41133766fa946d63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735515/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735515/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26833023$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>MacKellar, Drew</creatorcontrib><creatorcontrib>Lieber, Lucas</creatorcontrib><creatorcontrib>Norman, Jeffrey S.</creatorcontrib><creatorcontrib>Bolger, Anthony</creatorcontrib><creatorcontrib>Tobin, Cory</creatorcontrib><creatorcontrib>Murray, James W.</creatorcontrib><creatorcontrib>Oksaksin, Mehtap</creatorcontrib><creatorcontrib>Chang, Roger L.</creatorcontrib><creatorcontrib>Ford, Tyler J.</creatorcontrib><creatorcontrib>Nguyen, Peter Q.</creatorcontrib><creatorcontrib>Woodward, Jimmy</creatorcontrib><creatorcontrib>Permingeat, Hugo R.</creatorcontrib><creatorcontrib>Joshi, Neel S.</creatorcontrib><creatorcontrib>Silver, Pamela A.</creatorcontrib><creatorcontrib>Usadel, Björn</creatorcontrib><creatorcontrib>Rutherford, Alfred W.</creatorcontrib><creatorcontrib>Friesen, Maren L.</creatorcontrib><creatorcontrib>Prell, Jürgen</creatorcontrib><title>Streptomyces thermoautotrophicus does not fix nitrogen</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Streptomyces thermoautotrophicus
UBT1 has been described as a moderately thermophilic chemolithoautotroph with a novel nitrogenase enzyme that is oxygen-insensitive. We have cultured the UBT1 strain and have isolated two new strains (H1 and P1-2) of very similar phenotypic and genetic characters. These strains show minimal growth on ammonium-free media and fail to incorporate isotopically labeled N
2
gas into biomass in multiple independent assays. The
sdn
genes previously published as the putative nitrogenase of
S. thermoautotrophicus
have little similarity to anything found in draft genome sequences, published here, for strains H1 and UBT1, but share >99% nucleotide identity with genes from
Hydrogenibacillus schlegelii
, a draft genome for which is also presented here.
H. schlegelii
similarly lacks nitrogenase genes and is a non-diazotroph. We propose reclassification of the species containing strains UBT1, H1 and P1-2 as a non-Streptomycete, non-diazotrophic, facultative chemolithoautotroph and conclude that the existence of the previously proposed oxygen-tolerant nitrogenase is extremely unlikely.</description><subject>45</subject><subject>45/23</subject><subject>631/326/1320</subject><subject>631/326/47</subject><subject>631/45</subject><subject>Ammonium</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Biomass</subject><subject>Genes, Bacterial</subject><subject>Genomes</subject><subject>Humanities and Social Sciences</subject><subject>Isotope Labeling</subject><subject>multidisciplinary</subject><subject>Nitrogen - metabolism</subject><subject>Nitrogen Fixation</subject><subject>Nitrogenase</subject><subject>Nitrogenase - genetics</subject><subject>Nitrogenase - metabolism</subject><subject>Oxygen</subject><subject>Reclassification</subject><subject>Science</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Streptomyces - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>MacKellar, Drew</au><au>Lieber, Lucas</au><au>Norman, Jeffrey S.</au><au>Bolger, Anthony</au><au>Tobin, Cory</au><au>Murray, James W.</au><au>Oksaksin, Mehtap</au><au>Chang, Roger L.</au><au>Ford, Tyler J.</au><au>Nguyen, Peter Q.</au><au>Woodward, Jimmy</au><au>Permingeat, Hugo R.</au><au>Joshi, Neel S.</au><au>Silver, Pamela A.</au><au>Usadel, Björn</au><au>Rutherford, Alfred W.</au><au>Friesen, Maren L.</au><au>Prell, Jürgen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces thermoautotrophicus does not fix nitrogen</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2016-02-01</date><risdate>2016</risdate><volume>6</volume><issue>1</issue><spage>20086</spage><epage>20086</epage><pages>20086-20086</pages><artnum>20086</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Streptomyces thermoautotrophicus
UBT1 has been described as a moderately thermophilic chemolithoautotroph with a novel nitrogenase enzyme that is oxygen-insensitive. We have cultured the UBT1 strain and have isolated two new strains (H1 and P1-2) of very similar phenotypic and genetic characters. These strains show minimal growth on ammonium-free media and fail to incorporate isotopically labeled N
2
gas into biomass in multiple independent assays. The
sdn
genes previously published as the putative nitrogenase of
S. thermoautotrophicus
have little similarity to anything found in draft genome sequences, published here, for strains H1 and UBT1, but share >99% nucleotide identity with genes from
Hydrogenibacillus schlegelii
, a draft genome for which is also presented here.
H. schlegelii
similarly lacks nitrogenase genes and is a non-diazotroph. We propose reclassification of the species containing strains UBT1, H1 and P1-2 as a non-Streptomycete, non-diazotrophic, facultative chemolithoautotroph and conclude that the existence of the previously proposed oxygen-tolerant nitrogenase is extremely unlikely.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>26833023</pmid><doi>10.1038/srep20086</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | 45 45/23 631/326/1320 631/326/47 631/45 Ammonium Bacterial Proteins - genetics Bacterial Proteins - metabolism Biomass Genes, Bacterial Genomes Humanities and Social Sciences Isotope Labeling multidisciplinary Nitrogen - metabolism Nitrogen Fixation Nitrogenase Nitrogenase - genetics Nitrogenase - metabolism Oxygen Reclassification Science Sequence Homology, Nucleic Acid Streptomyces - genetics Streptomyces - metabolism |
| title | Streptomyces thermoautotrophicus does not fix nitrogen |
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