Degenerated intervertebral disc prolapse and its association of collagen I alpha 1 Spl gene polymorphism: A preliminary case control study of Indian population
Background Degenerated disc disease (DDD) is a common disorder responsible for increased morbidity in a productive age group. Its etiology is multifactorial and genetic factors have been predominantly implicated. Disc prolapse results due to tear in the annulus, which is a fibrous structure composed...
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description | Background
Degenerated disc disease (DDD) is a common disorder responsible for increased morbidity in a productive age group. Its etiology is multifactorial and genetic factors have been predominantly implicated. Disc prolapse results due to tear in the annulus, which is a fibrous structure composed largely of type I collagen. Functional polymorphism at the Sp1 site of the collagen I alpha 1 (COL1A1) gene has shown a positive association with DDD in Dutch and Greek populations. The purpose of this study was to assess COL1A1 Sp1 gene polymorphism in the Indian population.
Materials and Methods
Fifty clinically and radiologically proven patients with disc prolapse requiring surgery were included as cases and 50 healthy, age–matched volunteers served as controls. After isolating DNA from their blood sample, genotyping for COL1A1 polymorphism (rs1800012) was performed and identified as GG, GT, and TT.
Results
The mean age and body mass index in cases and controls were similar. 76% of the patients were males. The most common site of disc degeneration was L4–L5 (36%), followed by L5–S1 (34%). Homozygous–GG, heterozygous GT, and homozygous TT genotypes were seen in 38 (76%), 10 (20%) and 2 (4%) cases respectively, controls had similar percentage of genotypes as well. The alleles in cases and the control group showed no significant difference (
P
= 0.6744) and followed the Hardy–Weinberg Equilibrium in the study population.
Conclusion
The COL1A1 (rs1800012) is in Hardy–Weinberg equilibrium in the present subset of Indian population. But taken as a single factor, it was not found to be associated with DDD in this preliminary study. Disc degeneration is multifactorial and also anticipated to be a result of multiple genes involvement and gene–gene interaction. |
doi_str_mv | 10.4103/0019-5413.168765 |
format | Article |
fullrecord | <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4705723</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A435508012</galeid><sourcerecordid>A435508012</sourcerecordid><originalsourceid>FETCH-LOGICAL-c475t-8a743985c77bc7778d7bb702df922601d54ef5bd97201fd5c7d3b0ccaf4cdbdf3</originalsourceid><addsrcrecordid>eNp1ksGL1DAUxoMo7rh69yQBQbx0TNKmaS_Csrq6sOBBPYc0eZ1mSZOatAv735sy6-yMKCEE8n7fF97Lh9BrSrYVJeUHQmhb8IqWW1o3ouZP0Ia2bVOUgomnaHMon6EXKd0Swplg9XN0xuqG1G1dbdDwCXbgIaoZDLZ-hngHcYYuKoeNTRpPMTg1JcDKZ2BOWKUUtFWzDR6HHuvgnMoW-BorNw0KU_x9cng1xVNw92OI02DT-BI965VL8OrhPEc_rz7_uPxa3Hz7cn15cVPoSvC5aJSoyrbhWogub9EY0XWCMNO3jNWEGl5BzzvTCkZobzJnyo5orfpKm8705Tn6uPedlm4Eo8HPuRc5RTuqeC-DsvK04u0gd-FOVoJwwcps8P7BIIZfC6RZjnkOkLv0EJYkqahJSykv24y-_Qu9DUv0uT1JG8KrmrWCPFI75UBa34f8rl5N5UVVck4aQlmmtv-g8jIwWh089DbfnwjeHQkGUG4eUnDL-jHpFCR7UMeQUoT-MAxK5BojueZErjmR-xhlyZvjIR4Ef3KTAboHUi75HcSjzv9n-htk79EC</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1805462970</pqid></control><display><type>article</type><title>Degenerated intervertebral disc prolapse and its association of collagen I alpha 1 Spl gene polymorphism: A preliminary case control study of Indian population</title><source>Springer Nature - Complete Springer Journals</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Anjankar, Shailendra D. ; Poornima, Subhadra ; Raju, Subodh ; Jaleel, M. A. ; Bhiladvala, Dilnavaz ; Hasan, Qurratulain</creator><creatorcontrib>Anjankar, Shailendra D. ; Poornima, Subhadra ; Raju, Subodh ; Jaleel, M. A. ; Bhiladvala, Dilnavaz ; Hasan, Qurratulain</creatorcontrib><description>Background
Degenerated disc disease (DDD) is a common disorder responsible for increased morbidity in a productive age group. Its etiology is multifactorial and genetic factors have been predominantly implicated. Disc prolapse results due to tear in the annulus, which is a fibrous structure composed largely of type I collagen. Functional polymorphism at the Sp1 site of the collagen I alpha 1 (COL1A1) gene has shown a positive association with DDD in Dutch and Greek populations. The purpose of this study was to assess COL1A1 Sp1 gene polymorphism in the Indian population.
Materials and Methods
Fifty clinically and radiologically proven patients with disc prolapse requiring surgery were included as cases and 50 healthy, age–matched volunteers served as controls. After isolating DNA from their blood sample, genotyping for COL1A1 polymorphism (rs1800012) was performed and identified as GG, GT, and TT.
Results
The mean age and body mass index in cases and controls were similar. 76% of the patients were males. The most common site of disc degeneration was L4–L5 (36%), followed by L5–S1 (34%). Homozygous–GG, heterozygous GT, and homozygous TT genotypes were seen in 38 (76%), 10 (20%) and 2 (4%) cases respectively, controls had similar percentage of genotypes as well. The alleles in cases and the control group showed no significant difference (
P
= 0.6744) and followed the Hardy–Weinberg Equilibrium in the study population.
Conclusion
The COL1A1 (rs1800012) is in Hardy–Weinberg equilibrium in the present subset of Indian population. But taken as a single factor, it was not found to be associated with DDD in this preliminary study. Disc degeneration is multifactorial and also anticipated to be a result of multiple genes involvement and gene–gene interaction.</description><identifier>ISSN: 0019-5413</identifier><identifier>EISSN: 1998-3727</identifier><identifier>DOI: 10.4103/0019-5413.168765</identifier><identifier>PMID: 26806964</identifier><language>eng</language><publisher>New Delhi: Springer India</publisher><subject>Age ; Back pain ; Binding sites ; Biomarkers ; Classification ; Collagen ; Conservative Orthopedics ; Deoxyribonucleic acid ; Disease ; DNA ; Gene expression ; Genes ; Genetic polymorphisms ; Genetic research ; Health care ; Medicine & Public Health ; NMR ; Nuclear magnetic resonance ; Original ; Original Article ; Orthopedics ; Population ; Prolapse ; Studies ; Surgical Orthopedics</subject><ispartof>Indian journal of orthopaedics, 2015-11, Vol.49 (6), p.589-594</ispartof><rights>Indian Orthopaedics Association 2015</rights><rights>COPYRIGHT 2015 Medknow Publications and Media Pvt. Ltd.</rights><rights>Copyright Medknow Publications & Media Pvt Ltd Nov-Dec 2015</rights><rights>Copyright: © Indian Journal of Orthopaedics 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c475t-8a743985c77bc7778d7bb702df922601d54ef5bd97201fd5c7d3b0ccaf4cdbdf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705723/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705723/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,41467,42536,51297,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26806964$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Anjankar, Shailendra D.</creatorcontrib><creatorcontrib>Poornima, Subhadra</creatorcontrib><creatorcontrib>Raju, Subodh</creatorcontrib><creatorcontrib>Jaleel, M. A.</creatorcontrib><creatorcontrib>Bhiladvala, Dilnavaz</creatorcontrib><creatorcontrib>Hasan, Qurratulain</creatorcontrib><title>Degenerated intervertebral disc prolapse and its association of collagen I alpha 1 Spl gene polymorphism: A preliminary case control study of Indian population</title><title>Indian journal of orthopaedics</title><addtitle>IJOO</addtitle><addtitle>Indian J Orthop</addtitle><description>Background
Degenerated disc disease (DDD) is a common disorder responsible for increased morbidity in a productive age group. Its etiology is multifactorial and genetic factors have been predominantly implicated. Disc prolapse results due to tear in the annulus, which is a fibrous structure composed largely of type I collagen. Functional polymorphism at the Sp1 site of the collagen I alpha 1 (COL1A1) gene has shown a positive association with DDD in Dutch and Greek populations. The purpose of this study was to assess COL1A1 Sp1 gene polymorphism in the Indian population.
Materials and Methods
Fifty clinically and radiologically proven patients with disc prolapse requiring surgery were included as cases and 50 healthy, age–matched volunteers served as controls. After isolating DNA from their blood sample, genotyping for COL1A1 polymorphism (rs1800012) was performed and identified as GG, GT, and TT.
Results
The mean age and body mass index in cases and controls were similar. 76% of the patients were males. The most common site of disc degeneration was L4–L5 (36%), followed by L5–S1 (34%). Homozygous–GG, heterozygous GT, and homozygous TT genotypes were seen in 38 (76%), 10 (20%) and 2 (4%) cases respectively, controls had similar percentage of genotypes as well. The alleles in cases and the control group showed no significant difference (
P
= 0.6744) and followed the Hardy–Weinberg Equilibrium in the study population.
Conclusion
The COL1A1 (rs1800012) is in Hardy–Weinberg equilibrium in the present subset of Indian population. But taken as a single factor, it was not found to be associated with DDD in this preliminary study. Disc degeneration is multifactorial and also anticipated to be a result of multiple genes involvement and gene–gene interaction.</description><subject>Age</subject><subject>Back pain</subject><subject>Binding sites</subject><subject>Biomarkers</subject><subject>Classification</subject><subject>Collagen</subject><subject>Conservative Orthopedics</subject><subject>Deoxyribonucleic acid</subject><subject>Disease</subject><subject>DNA</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genetic polymorphisms</subject><subject>Genetic research</subject><subject>Health care</subject><subject>Medicine & Public Health</subject><subject>NMR</subject><subject>Nuclear magnetic resonance</subject><subject>Original</subject><subject>Original Article</subject><subject>Orthopedics</subject><subject>Population</subject><subject>Prolapse</subject><subject>Studies</subject><subject>Surgical Orthopedics</subject><issn>0019-5413</issn><issn>1998-3727</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp1ksGL1DAUxoMo7rh69yQBQbx0TNKmaS_Csrq6sOBBPYc0eZ1mSZOatAv735sy6-yMKCEE8n7fF97Lh9BrSrYVJeUHQmhb8IqWW1o3ouZP0Ia2bVOUgomnaHMon6EXKd0Swplg9XN0xuqG1G1dbdDwCXbgIaoZDLZ-hngHcYYuKoeNTRpPMTg1JcDKZ2BOWKUUtFWzDR6HHuvgnMoW-BorNw0KU_x9cng1xVNw92OI02DT-BI965VL8OrhPEc_rz7_uPxa3Hz7cn15cVPoSvC5aJSoyrbhWogub9EY0XWCMNO3jNWEGl5BzzvTCkZobzJnyo5orfpKm8705Tn6uPedlm4Eo8HPuRc5RTuqeC-DsvK04u0gd-FOVoJwwcps8P7BIIZfC6RZjnkOkLv0EJYkqahJSykv24y-_Qu9DUv0uT1JG8KrmrWCPFI75UBa34f8rl5N5UVVck4aQlmmtv-g8jIwWh089DbfnwjeHQkGUG4eUnDL-jHpFCR7UMeQUoT-MAxK5BojueZErjmR-xhlyZvjIR4Ef3KTAboHUi75HcSjzv9n-htk79EC</recordid><startdate>20151101</startdate><enddate>20151101</enddate><creator>Anjankar, Shailendra D.</creator><creator>Poornima, Subhadra</creator><creator>Raju, Subodh</creator><creator>Jaleel, M. A.</creator><creator>Bhiladvala, Dilnavaz</creator><creator>Hasan, Qurratulain</creator><general>Springer India</general><general>Medknow Publications and Media Pvt. Ltd</general><general>Medknow Publications & Media Pvt. Ltd</general><general>Medknow Publications & Media Pvt Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PADUT</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20151101</creationdate><title>Degenerated intervertebral disc prolapse and its association of collagen I alpha 1 Spl gene polymorphism</title><author>Anjankar, Shailendra D. ; Poornima, Subhadra ; Raju, Subodh ; Jaleel, M. A. ; Bhiladvala, Dilnavaz ; Hasan, Qurratulain</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c475t-8a743985c77bc7778d7bb702df922601d54ef5bd97201fd5c7d3b0ccaf4cdbdf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Age</topic><topic>Back pain</topic><topic>Binding sites</topic><topic>Biomarkers</topic><topic>Classification</topic><topic>Collagen</topic><topic>Conservative Orthopedics</topic><topic>Deoxyribonucleic acid</topic><topic>Disease</topic><topic>DNA</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genetic polymorphisms</topic><topic>Genetic research</topic><topic>Health care</topic><topic>Medicine & Public Health</topic><topic>NMR</topic><topic>Nuclear magnetic resonance</topic><topic>Original</topic><topic>Original Article</topic><topic>Orthopedics</topic><topic>Population</topic><topic>Prolapse</topic><topic>Studies</topic><topic>Surgical Orthopedics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Anjankar, Shailendra D.</creatorcontrib><creatorcontrib>Poornima, Subhadra</creatorcontrib><creatorcontrib>Raju, Subodh</creatorcontrib><creatorcontrib>Jaleel, M. A.</creatorcontrib><creatorcontrib>Bhiladvala, Dilnavaz</creatorcontrib><creatorcontrib>Hasan, Qurratulain</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Research Library China</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Indian journal of orthopaedics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Anjankar, Shailendra D.</au><au>Poornima, Subhadra</au><au>Raju, Subodh</au><au>Jaleel, M. A.</au><au>Bhiladvala, Dilnavaz</au><au>Hasan, Qurratulain</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Degenerated intervertebral disc prolapse and its association of collagen I alpha 1 Spl gene polymorphism: A preliminary case control study of Indian population</atitle><jtitle>Indian journal of orthopaedics</jtitle><stitle>IJOO</stitle><addtitle>Indian J Orthop</addtitle><date>2015-11-01</date><risdate>2015</risdate><volume>49</volume><issue>6</issue><spage>589</spage><epage>594</epage><pages>589-594</pages><issn>0019-5413</issn><eissn>1998-3727</eissn><abstract>Background
Degenerated disc disease (DDD) is a common disorder responsible for increased morbidity in a productive age group. Its etiology is multifactorial and genetic factors have been predominantly implicated. Disc prolapse results due to tear in the annulus, which is a fibrous structure composed largely of type I collagen. Functional polymorphism at the Sp1 site of the collagen I alpha 1 (COL1A1) gene has shown a positive association with DDD in Dutch and Greek populations. The purpose of this study was to assess COL1A1 Sp1 gene polymorphism in the Indian population.
Materials and Methods
Fifty clinically and radiologically proven patients with disc prolapse requiring surgery were included as cases and 50 healthy, age–matched volunteers served as controls. After isolating DNA from their blood sample, genotyping for COL1A1 polymorphism (rs1800012) was performed and identified as GG, GT, and TT.
Results
The mean age and body mass index in cases and controls were similar. 76% of the patients were males. The most common site of disc degeneration was L4–L5 (36%), followed by L5–S1 (34%). Homozygous–GG, heterozygous GT, and homozygous TT genotypes were seen in 38 (76%), 10 (20%) and 2 (4%) cases respectively, controls had similar percentage of genotypes as well. The alleles in cases and the control group showed no significant difference (
P
= 0.6744) and followed the Hardy–Weinberg Equilibrium in the study population.
Conclusion
The COL1A1 (rs1800012) is in Hardy–Weinberg equilibrium in the present subset of Indian population. But taken as a single factor, it was not found to be associated with DDD in this preliminary study. Disc degeneration is multifactorial and also anticipated to be a result of multiple genes involvement and gene–gene interaction.</abstract><cop>New Delhi</cop><pub>Springer India</pub><pmid>26806964</pmid><doi>10.4103/0019-5413.168765</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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source | Springer Nature - Complete Springer Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Age Back pain Binding sites Biomarkers Classification Collagen Conservative Orthopedics Deoxyribonucleic acid Disease DNA Gene expression Genes Genetic polymorphisms Genetic research Health care Medicine & Public Health NMR Nuclear magnetic resonance Original Original Article Orthopedics Population Prolapse Studies Surgical Orthopedics |
title | Degenerated intervertebral disc prolapse and its association of collagen I alpha 1 Spl gene polymorphism: A preliminary case control study of Indian population |
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