Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform

The detection of pathogens in complex sample backgrounds has been revolutionized by wide access to next-generation sequencing (NGS) platforms. However, analytical methods to support NGS platforms are not as uniformly available. Pathosphere (found at Pathosphere.org) is a cloud - based open - sourced...

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Veröffentlicht in:	BMC bioinformatics 2015-12, Vol.16 (416), p.416-416, Article 416
Hauptverfasser:	Kilianski, Andy, Carcel, Patrick, Yao, Shijie, Roth, Pierce, Schulte, Josh, Donarum, Greg B, Fochler, Ed T, Hill, Jessica M, Liem, Alvin T, Wiley, Michael R, Ladner, Jason T, Pfeffer, Bradley P, Elliot, Oliver, Petrosov, Alexandra, Jima, Dereje D, Vallard, Tyghe G, Melendrez, Melanie C, Skowronski, Evan, Quan, Phenix-Lan, Lipkin, W Ian, Gibbons, Henry S, Hirschberg, David L, Palacios, Gustavo F, Rosenzweig, C Nicole
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms analytical pipeline Animals Arenavirus - genetics Arenavirus - isolation & purification BASIC BIOLOGICAL SCIENCES biochemistry & molecular biology biotechnology & applied microbiology Cloud computing Computational Biology Coronavirus - genetics Coronavirus - isolation & purification Databases, Factual DNA sequencing Flavivirus - genetics Flavivirus - isolation & purification High-Throughput Nucleotide Sequencing Humans Internet iterative analysis mathematical & computational biology near neighbor Nucleotide sequencing pathogen detection pathogen identification RNA, Viral - chemistry RNA, Viral - metabolism Sequence Analysis, RNA Software User-Computer Interface
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