Evidence of intense chromosomal shuffling during conifer evolution
While recent advances have been gained on genome evolution in angiosperm lineages, virtually nothing is known about karyotype evolution in the other group of seed plants, the gymnosperms. Here we used high density gene-based linkage mapping to compare the karyotype structure of two families of conif...
Gespeichert in:
| Veröffentlicht in: | Genome biology and evolution 2015-10, Vol.7 (10), p.2799-2809 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 2809 |
|---|---|
| container_issue | 10 |
| container_start_page | 2799 |
| container_title | Genome biology and evolution |
| container_volume | 7 |
| creator | de Miguel, Marina Bartholomé, Jérôme Ehrenmann, François Murat, Florent Moriguchi, Yoshinari Uchiyama, Kentaro Ueno, Saneyoshi Tsumura, Yoshihiko Lagraulet, Hélène de Maria, Nuria Cabezas, José-Antonio Cervera, Maria-Teresa Gion, Jean Marc Salse, Jérôme Plomion, Christophe |
| description | While recent advances have been gained on genome evolution in angiosperm lineages, virtually nothing is known about karyotype evolution in the other group of seed plants, the gymnosperms. Here we used high density gene-based linkage mapping to compare the karyotype structure of two families of conifers (the most abundant group of gymnosperms) separated around 290 million years ago: Pinaceae and Cupressaceae. We propose for the first time a model based on the fusion of 20 ancestral chromosomal blocks that may have shaped the modern karyotpes of Pinaceae (with n=12) and Cupressaceae (with n=11). The considerable difference in modern genome organization between these two lineages contrasts strongly with the remarkable level of synteny already reported within the Pinaceae. It also suggests a convergent evolutionary mechanism of chromosomal block shuffling that has shaped the genomes of the spermatophytes. |
| doi_str_mv | 10.1093/gbe/evv185 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4684699</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1826626954</sourcerecordid><originalsourceid>FETCH-LOGICAL-c412t-e69872bc6d980a005a93fc12ae12d30079a9e51e570dfc75ac6fd0f830ac34203</originalsourceid><addsrcrecordid>eNpdkU9LJDEQxYMo6rp78QNIH3VhnErSSXcugor_YMDL7jlk0pWZSHeiSXeD3357mFF0T6-o-tUrikfIKYVLCorPV0uc4zjSWuyRY1oJNZNS8P0v9RH5kfMLgJSl5IfkiMkSoARxTG7uRt9gsFhEV_jQY8hY2HWKXcyxM22R14NzrQ-rohnSRmwM3mEqcIzt0PsYfpIDZ9qMv3Z6Qv7e3_25fZwtnh-ebq8XM1tS1s9QqrpiSysbVYMBEEZxZykzSFnDASplFAqKooLG2UoYK10DruZgLC8Z8BNytfV9HZYdNhZDn0yrX5PvTHrX0Xj9fRL8Wq_iqEtZl1KpyeBia7D-b-3xeqE3PWCsFoKykU7s-e5Yim8D5l53PltsWxMwDlnTmknJpBLlhP7eojbFnBO6T28KehOQngLS24Am-OzrE5_oRyL8H85FjZ8</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1826626954</pqid></control><display><type>article</type><title>Evidence of intense chromosomal shuffling during conifer evolution</title><source>Oxford Journals Open Access Collection</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>de Miguel, Marina ; Bartholomé, Jérôme ; Ehrenmann, François ; Murat, Florent ; Moriguchi, Yoshinari ; Uchiyama, Kentaro ; Ueno, Saneyoshi ; Tsumura, Yoshihiko ; Lagraulet, Hélène ; de Maria, Nuria ; Cabezas, José-Antonio ; Cervera, Maria-Teresa ; Gion, Jean Marc ; Salse, Jérôme ; Plomion, Christophe</creator><creatorcontrib>de Miguel, Marina ; Bartholomé, Jérôme ; Ehrenmann, François ; Murat, Florent ; Moriguchi, Yoshinari ; Uchiyama, Kentaro ; Ueno, Saneyoshi ; Tsumura, Yoshihiko ; Lagraulet, Hélène ; de Maria, Nuria ; Cabezas, José-Antonio ; Cervera, Maria-Teresa ; Gion, Jean Marc ; Salse, Jérôme ; Plomion, Christophe</creatorcontrib><description>While recent advances have been gained on genome evolution in angiosperm lineages, virtually nothing is known about karyotype evolution in the other group of seed plants, the gymnosperms. Here we used high density gene-based linkage mapping to compare the karyotype structure of two families of conifers (the most abundant group of gymnosperms) separated around 290 million years ago: Pinaceae and Cupressaceae. We propose for the first time a model based on the fusion of 20 ancestral chromosomal blocks that may have shaped the modern karyotpes of Pinaceae (with n=12) and Cupressaceae (with n=11). The considerable difference in modern genome organization between these two lineages contrasts strongly with the remarkable level of synteny already reported within the Pinaceae. It also suggests a convergent evolutionary mechanism of chromosomal block shuffling that has shaped the genomes of the spermatophytes.</description><identifier>ISSN: 1759-6653</identifier><identifier>EISSN: 1759-6653</identifier><identifier>DOI: 10.1093/gbe/evv185</identifier><identifier>PMID: 26400405</identifier><language>eng</language><publisher>England: Society for Molecular Biology and Evolution</publisher><subject>Letter ; Life Sciences</subject><ispartof>Genome biology and evolution, 2015-10, Vol.7 (10), p.2799-2809</ispartof><rights>The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.</rights><rights>Attribution</rights><rights>The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. 2015</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-e69872bc6d980a005a93fc12ae12d30079a9e51e570dfc75ac6fd0f830ac34203</citedby><orcidid>0000-0003-2942-1098 ; 0000-0002-0855-3828 ; 0000-0002-3176-2767 ; 0000-0001-6398-2660 ; 0000-0003-2727-0070 ; 0000-0003-2116-2511</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684699/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684699/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26400405$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-02285512$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>de Miguel, Marina</creatorcontrib><creatorcontrib>Bartholomé, Jérôme</creatorcontrib><creatorcontrib>Ehrenmann, François</creatorcontrib><creatorcontrib>Murat, Florent</creatorcontrib><creatorcontrib>Moriguchi, Yoshinari</creatorcontrib><creatorcontrib>Uchiyama, Kentaro</creatorcontrib><creatorcontrib>Ueno, Saneyoshi</creatorcontrib><creatorcontrib>Tsumura, Yoshihiko</creatorcontrib><creatorcontrib>Lagraulet, Hélène</creatorcontrib><creatorcontrib>de Maria, Nuria</creatorcontrib><creatorcontrib>Cabezas, José-Antonio</creatorcontrib><creatorcontrib>Cervera, Maria-Teresa</creatorcontrib><creatorcontrib>Gion, Jean Marc</creatorcontrib><creatorcontrib>Salse, Jérôme</creatorcontrib><creatorcontrib>Plomion, Christophe</creatorcontrib><title>Evidence of intense chromosomal shuffling during conifer evolution</title><title>Genome biology and evolution</title><addtitle>Genome Biol Evol</addtitle><description>While recent advances have been gained on genome evolution in angiosperm lineages, virtually nothing is known about karyotype evolution in the other group of seed plants, the gymnosperms. Here we used high density gene-based linkage mapping to compare the karyotype structure of two families of conifers (the most abundant group of gymnosperms) separated around 290 million years ago: Pinaceae and Cupressaceae. We propose for the first time a model based on the fusion of 20 ancestral chromosomal blocks that may have shaped the modern karyotpes of Pinaceae (with n=12) and Cupressaceae (with n=11). The considerable difference in modern genome organization between these two lineages contrasts strongly with the remarkable level of synteny already reported within the Pinaceae. It also suggests a convergent evolutionary mechanism of chromosomal block shuffling that has shaped the genomes of the spermatophytes.</description><subject>Letter</subject><subject>Life Sciences</subject><issn>1759-6653</issn><issn>1759-6653</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNpdkU9LJDEQxYMo6rp78QNIH3VhnErSSXcugor_YMDL7jlk0pWZSHeiSXeD3357mFF0T6-o-tUrikfIKYVLCorPV0uc4zjSWuyRY1oJNZNS8P0v9RH5kfMLgJSl5IfkiMkSoARxTG7uRt9gsFhEV_jQY8hY2HWKXcyxM22R14NzrQ-rohnSRmwM3mEqcIzt0PsYfpIDZ9qMv3Z6Qv7e3_25fZwtnh-ebq8XM1tS1s9QqrpiSysbVYMBEEZxZykzSFnDASplFAqKooLG2UoYK10DruZgLC8Z8BNytfV9HZYdNhZDn0yrX5PvTHrX0Xj9fRL8Wq_iqEtZl1KpyeBia7D-b-3xeqE3PWCsFoKykU7s-e5Yim8D5l53PltsWxMwDlnTmknJpBLlhP7eojbFnBO6T28KehOQngLS24Am-OzrE5_oRyL8H85FjZ8</recordid><startdate>20151001</startdate><enddate>20151001</enddate><creator>de Miguel, Marina</creator><creator>Bartholomé, Jérôme</creator><creator>Ehrenmann, François</creator><creator>Murat, Florent</creator><creator>Moriguchi, Yoshinari</creator><creator>Uchiyama, Kentaro</creator><creator>Ueno, Saneyoshi</creator><creator>Tsumura, Yoshihiko</creator><creator>Lagraulet, Hélène</creator><creator>de Maria, Nuria</creator><creator>Cabezas, José-Antonio</creator><creator>Cervera, Maria-Teresa</creator><creator>Gion, Jean Marc</creator><creator>Salse, Jérôme</creator><creator>Plomion, Christophe</creator><general>Society for Molecular Biology and Evolution</general><general>Oxford University Press</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2942-1098</orcidid><orcidid>https://orcid.org/0000-0002-0855-3828</orcidid><orcidid>https://orcid.org/0000-0002-3176-2767</orcidid><orcidid>https://orcid.org/0000-0001-6398-2660</orcidid><orcidid>https://orcid.org/0000-0003-2727-0070</orcidid><orcidid>https://orcid.org/0000-0003-2116-2511</orcidid></search><sort><creationdate>20151001</creationdate><title>Evidence of intense chromosomal shuffling during conifer evolution</title><author>de Miguel, Marina ; Bartholomé, Jérôme ; Ehrenmann, François ; Murat, Florent ; Moriguchi, Yoshinari ; Uchiyama, Kentaro ; Ueno, Saneyoshi ; Tsumura, Yoshihiko ; Lagraulet, Hélène ; de Maria, Nuria ; Cabezas, José-Antonio ; Cervera, Maria-Teresa ; Gion, Jean Marc ; Salse, Jérôme ; Plomion, Christophe</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c412t-e69872bc6d980a005a93fc12ae12d30079a9e51e570dfc75ac6fd0f830ac34203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Letter</topic><topic>Life Sciences</topic><toplevel>online_resources</toplevel><creatorcontrib>de Miguel, Marina</creatorcontrib><creatorcontrib>Bartholomé, Jérôme</creatorcontrib><creatorcontrib>Ehrenmann, François</creatorcontrib><creatorcontrib>Murat, Florent</creatorcontrib><creatorcontrib>Moriguchi, Yoshinari</creatorcontrib><creatorcontrib>Uchiyama, Kentaro</creatorcontrib><creatorcontrib>Ueno, Saneyoshi</creatorcontrib><creatorcontrib>Tsumura, Yoshihiko</creatorcontrib><creatorcontrib>Lagraulet, Hélène</creatorcontrib><creatorcontrib>de Maria, Nuria</creatorcontrib><creatorcontrib>Cabezas, José-Antonio</creatorcontrib><creatorcontrib>Cervera, Maria-Teresa</creatorcontrib><creatorcontrib>Gion, Jean Marc</creatorcontrib><creatorcontrib>Salse, Jérôme</creatorcontrib><creatorcontrib>Plomion, Christophe</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genome biology and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>de Miguel, Marina</au><au>Bartholomé, Jérôme</au><au>Ehrenmann, François</au><au>Murat, Florent</au><au>Moriguchi, Yoshinari</au><au>Uchiyama, Kentaro</au><au>Ueno, Saneyoshi</au><au>Tsumura, Yoshihiko</au><au>Lagraulet, Hélène</au><au>de Maria, Nuria</au><au>Cabezas, José-Antonio</au><au>Cervera, Maria-Teresa</au><au>Gion, Jean Marc</au><au>Salse, Jérôme</au><au>Plomion, Christophe</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evidence of intense chromosomal shuffling during conifer evolution</atitle><jtitle>Genome biology and evolution</jtitle><addtitle>Genome Biol Evol</addtitle><date>2015-10-01</date><risdate>2015</risdate><volume>7</volume><issue>10</issue><spage>2799</spage><epage>2809</epage><pages>2799-2809</pages><issn>1759-6653</issn><eissn>1759-6653</eissn><abstract>While recent advances have been gained on genome evolution in angiosperm lineages, virtually nothing is known about karyotype evolution in the other group of seed plants, the gymnosperms. Here we used high density gene-based linkage mapping to compare the karyotype structure of two families of conifers (the most abundant group of gymnosperms) separated around 290 million years ago: Pinaceae and Cupressaceae. We propose for the first time a model based on the fusion of 20 ancestral chromosomal blocks that may have shaped the modern karyotpes of Pinaceae (with n=12) and Cupressaceae (with n=11). The considerable difference in modern genome organization between these two lineages contrasts strongly with the remarkable level of synteny already reported within the Pinaceae. It also suggests a convergent evolutionary mechanism of chromosomal block shuffling that has shaped the genomes of the spermatophytes.</abstract><cop>England</cop><pub>Society for Molecular Biology and Evolution</pub><pmid>26400405</pmid><doi>10.1093/gbe/evv185</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0003-2942-1098</orcidid><orcidid>https://orcid.org/0000-0002-0855-3828</orcidid><orcidid>https://orcid.org/0000-0002-3176-2767</orcidid><orcidid>https://orcid.org/0000-0001-6398-2660</orcidid><orcidid>https://orcid.org/0000-0003-2727-0070</orcidid><orcidid>https://orcid.org/0000-0003-2116-2511</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1759-6653 |
| ispartof | Genome biology and evolution, 2015-10, Vol.7 (10), p.2799-2809 |
| issn | 1759-6653 1759-6653 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4684699 |
| source | Oxford Journals Open Access Collection; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
| subjects | Letter Life Sciences |
| title | Evidence of intense chromosomal shuffling during conifer evolution |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-03T22%3A26%3A47IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Evidence%20of%20intense%20chromosomal%20shuffling%20during%20conifer%20evolution&rft.jtitle=Genome%20biology%20and%20evolution&rft.au=de%20Miguel,%20Marina&rft.date=2015-10-01&rft.volume=7&rft.issue=10&rft.spage=2799&rft.epage=2809&rft.pages=2799-2809&rft.issn=1759-6653&rft.eissn=1759-6653&rft_id=info:doi/10.1093/gbe/evv185&rft_dat=%3Cproquest_pubme%3E1826626954%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1826626954&rft_id=info:pmid/26400405&rfr_iscdi=true |