Innovating to enhance clinical data management using non-commercial and open source solutions across a multi-center network supporting inpatient pediatric care and research in Kenya
Objective To share approaches and innovations adopted to deliver a relatively inexpensive clinical data management (CDM) framework within a low-income setting that aims to deliver quality pediatric data useful for supporting research, strengthening the information culture and informing improvement e...
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Veröffentlicht in: | Journal of the American Medical Informatics Association : JAMIA 2016-01, Vol.23 (1), p.184-192 |
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creator | Tuti, Timothy Bitok, Michael Paton, Chris Makone, Boniface Malla, Lucas Muinga, Naomi Gathara, David English, Mike |
description | Objective To share approaches and innovations adopted to deliver a relatively inexpensive clinical data management (CDM) framework within a low-income setting that aims to deliver quality pediatric data useful for supporting research, strengthening the information culture and informing improvement efforts in local clinical practice.
Materials and methods The authors implemented a CDM framework to support a Clinical Information Network (CIN) using Research Electronic Data Capture (REDCap), a noncommercial software solution designed for rapid development and deployment of electronic data capture tools. It was used for collection of standardized data from case records of multiple hospitals’ pediatric wards. R, an open-source statistical language, was used for data quality enhancement, analysis, and report generation for the hospitals.
Results In the first year of CIN, the authors have developed innovative solutions to support the implementation of a secure, rapid pediatric data collection system spanning 14 hospital sites with stringent data quality checks. Data have been collated on over 37 000 admission episodes, with considerable improvement in clinical documentation of admissions observed. Using meta-programming techniques in R, coupled with branching logic, randomization, data lookup, and Application Programming Interface (API) features offered by REDCap, CDM tasks were configured and automated to ensure quality data was delivered for clinical improvement and research use.
Conclusion A low-cost clinically focused but geographically dispersed quality CDM (Clinical Data Management) in a long-term, multi-site, and real world context can be achieved and sustained and challenges can be overcome through thoughtful design and implementation of open-source tools for handling data and supporting research. |
doi_str_mv | 10.1093/jamia/ocv028 |
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fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4681113</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/jamia/ocv028</oup_id><sourcerecordid>1768559839</sourcerecordid><originalsourceid>FETCH-LOGICAL-c416t-994a991c7217db875140c68437a1e02bce12800325ed465239d741e3d192aadb3</originalsourceid><addsrcrecordid>eNp9kTtvFDEURkcIRB7QUSN3UGSIHzP2uEGKIh4RkWhAorPuem52HWbswY9F-WH8P7y7IYKG6lry8bmf_DXNC0bfMKrF-S3MDs6D3VI-PGqOWc9Vq1X37XE9U6nannJ11JykdEspk1z0T5sjLqkUqpPHza8r78MWsvNrkgNBvwFvkdjJeWdhIiNkIDN4WOOMPpOSdqQPvrVhnjFaVyHwIwkLepJCifV1ClPJLvhEwMaQ6iBzmbJrbVVgJB7zzxC_k1SWJcT9bueXGmK3YcHRQY7OEgsR9-6ICSHaTaXIJ_R38Kx5cgNTwuf387T5-v7dl8uP7fXnD1eXF9et7ZjMrdYdaM2s4kyNq0H1rKNWDp1QwJDylUXGB0oF73HsZM-FHlXHUIxMc4BxJU6btwfvUlYzjrv4ESazRDdDvDMBnPn3xruNWYet6eTAGBNV8PpeEMOPgimb2SWL0wQeQ0mGKTn0vR6ErujZAd1_WcSbhzWMml3TZt-0OTRd8Zd_R3uA_1RbgVcHIJTl_6rfzn-5VQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1768559839</pqid></control><display><type>article</type><title>Innovating to enhance clinical data management using non-commercial and open source solutions across a multi-center network supporting inpatient pediatric care and research in Kenya</title><source>Oxford University Press Journals All Titles (1996-Current)</source><source>MEDLINE</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Tuti, Timothy ; Bitok, Michael ; Paton, Chris ; Makone, Boniface ; Malla, Lucas ; Muinga, Naomi ; Gathara, David ; English, Mike</creator><creatorcontrib>Tuti, Timothy ; Bitok, Michael ; Paton, Chris ; Makone, Boniface ; Malla, Lucas ; Muinga, Naomi ; Gathara, David ; English, Mike</creatorcontrib><description>Objective To share approaches and innovations adopted to deliver a relatively inexpensive clinical data management (CDM) framework within a low-income setting that aims to deliver quality pediatric data useful for supporting research, strengthening the information culture and informing improvement efforts in local clinical practice.
Materials and methods The authors implemented a CDM framework to support a Clinical Information Network (CIN) using Research Electronic Data Capture (REDCap), a noncommercial software solution designed for rapid development and deployment of electronic data capture tools. It was used for collection of standardized data from case records of multiple hospitals’ pediatric wards. R, an open-source statistical language, was used for data quality enhancement, analysis, and report generation for the hospitals.
Results In the first year of CIN, the authors have developed innovative solutions to support the implementation of a secure, rapid pediatric data collection system spanning 14 hospital sites with stringent data quality checks. Data have been collated on over 37 000 admission episodes, with considerable improvement in clinical documentation of admissions observed. Using meta-programming techniques in R, coupled with branching logic, randomization, data lookup, and Application Programming Interface (API) features offered by REDCap, CDM tasks were configured and automated to ensure quality data was delivered for clinical improvement and research use.
Conclusion A low-cost clinically focused but geographically dispersed quality CDM (Clinical Data Management) in a long-term, multi-site, and real world context can be achieved and sustained and challenges can be overcome through thoughtful design and implementation of open-source tools for handling data and supporting research.</description><identifier>ISSN: 1067-5027</identifier><identifier>EISSN: 1527-974X</identifier><identifier>DOI: 10.1093/jamia/ocv028</identifier><identifier>PMID: 26063746</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Biomedical Research ; Child ; Clinical Trials as Topic ; Data Collection - methods ; Hospitalization ; Humans ; Information Storage and Retrieval - methods ; Kenya ; Ownership ; Pediatrics ; Research and Applications ; Software</subject><ispartof>Journal of the American Medical Informatics Association : JAMIA, 2016-01, Vol.23 (1), p.184-192</ispartof><rights>The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. 2015</rights><rights>The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c416t-994a991c7217db875140c68437a1e02bce12800325ed465239d741e3d192aadb3</citedby><cites>FETCH-LOGICAL-c416t-994a991c7217db875140c68437a1e02bce12800325ed465239d741e3d192aadb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681113/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681113/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,1578,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26063746$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tuti, Timothy</creatorcontrib><creatorcontrib>Bitok, Michael</creatorcontrib><creatorcontrib>Paton, Chris</creatorcontrib><creatorcontrib>Makone, Boniface</creatorcontrib><creatorcontrib>Malla, Lucas</creatorcontrib><creatorcontrib>Muinga, Naomi</creatorcontrib><creatorcontrib>Gathara, David</creatorcontrib><creatorcontrib>English, Mike</creatorcontrib><title>Innovating to enhance clinical data management using non-commercial and open source solutions across a multi-center network supporting inpatient pediatric care and research in Kenya</title><title>Journal of the American Medical Informatics Association : JAMIA</title><addtitle>J Am Med Inform Assoc</addtitle><description>Objective To share approaches and innovations adopted to deliver a relatively inexpensive clinical data management (CDM) framework within a low-income setting that aims to deliver quality pediatric data useful for supporting research, strengthening the information culture and informing improvement efforts in local clinical practice.
Materials and methods The authors implemented a CDM framework to support a Clinical Information Network (CIN) using Research Electronic Data Capture (REDCap), a noncommercial software solution designed for rapid development and deployment of electronic data capture tools. It was used for collection of standardized data from case records of multiple hospitals’ pediatric wards. R, an open-source statistical language, was used for data quality enhancement, analysis, and report generation for the hospitals.
Results In the first year of CIN, the authors have developed innovative solutions to support the implementation of a secure, rapid pediatric data collection system spanning 14 hospital sites with stringent data quality checks. Data have been collated on over 37 000 admission episodes, with considerable improvement in clinical documentation of admissions observed. Using meta-programming techniques in R, coupled with branching logic, randomization, data lookup, and Application Programming Interface (API) features offered by REDCap, CDM tasks were configured and automated to ensure quality data was delivered for clinical improvement and research use.
Conclusion A low-cost clinically focused but geographically dispersed quality CDM (Clinical Data Management) in a long-term, multi-site, and real world context can be achieved and sustained and challenges can be overcome through thoughtful design and implementation of open-source tools for handling data and supporting research.</description><subject>Biomedical Research</subject><subject>Child</subject><subject>Clinical Trials as Topic</subject><subject>Data Collection - methods</subject><subject>Hospitalization</subject><subject>Humans</subject><subject>Information Storage and Retrieval - methods</subject><subject>Kenya</subject><subject>Ownership</subject><subject>Pediatrics</subject><subject>Research and Applications</subject><subject>Software</subject><issn>1067-5027</issn><issn>1527-974X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><sourceid>EIF</sourceid><recordid>eNp9kTtvFDEURkcIRB7QUSN3UGSIHzP2uEGKIh4RkWhAorPuem52HWbswY9F-WH8P7y7IYKG6lry8bmf_DXNC0bfMKrF-S3MDs6D3VI-PGqOWc9Vq1X37XE9U6nannJ11JykdEspk1z0T5sjLqkUqpPHza8r78MWsvNrkgNBvwFvkdjJeWdhIiNkIDN4WOOMPpOSdqQPvrVhnjFaVyHwIwkLepJCifV1ClPJLvhEwMaQ6iBzmbJrbVVgJB7zzxC_k1SWJcT9bueXGmK3YcHRQY7OEgsR9-6ICSHaTaXIJ_R38Kx5cgNTwuf387T5-v7dl8uP7fXnD1eXF9et7ZjMrdYdaM2s4kyNq0H1rKNWDp1QwJDylUXGB0oF73HsZM-FHlXHUIxMc4BxJU6btwfvUlYzjrv4ESazRDdDvDMBnPn3xruNWYet6eTAGBNV8PpeEMOPgimb2SWL0wQeQ0mGKTn0vR6ErujZAd1_WcSbhzWMml3TZt-0OTRd8Zd_R3uA_1RbgVcHIJTl_6rfzn-5VQ</recordid><startdate>20160101</startdate><enddate>20160101</enddate><creator>Tuti, Timothy</creator><creator>Bitok, Michael</creator><creator>Paton, Chris</creator><creator>Makone, Boniface</creator><creator>Malla, Lucas</creator><creator>Muinga, Naomi</creator><creator>Gathara, David</creator><creator>English, Mike</creator><general>Oxford University Press</general><scope>TOX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20160101</creationdate><title>Innovating to enhance clinical data management using non-commercial and open source solutions across a multi-center network supporting inpatient pediatric care and research in Kenya</title><author>Tuti, Timothy ; Bitok, Michael ; Paton, Chris ; Makone, Boniface ; Malla, Lucas ; Muinga, Naomi ; Gathara, David ; English, Mike</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c416t-994a991c7217db875140c68437a1e02bce12800325ed465239d741e3d192aadb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Biomedical Research</topic><topic>Child</topic><topic>Clinical Trials as Topic</topic><topic>Data Collection - methods</topic><topic>Hospitalization</topic><topic>Humans</topic><topic>Information Storage and Retrieval - methods</topic><topic>Kenya</topic><topic>Ownership</topic><topic>Pediatrics</topic><topic>Research and Applications</topic><topic>Software</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tuti, Timothy</creatorcontrib><creatorcontrib>Bitok, Michael</creatorcontrib><creatorcontrib>Paton, Chris</creatorcontrib><creatorcontrib>Makone, Boniface</creatorcontrib><creatorcontrib>Malla, Lucas</creatorcontrib><creatorcontrib>Muinga, Naomi</creatorcontrib><creatorcontrib>Gathara, David</creatorcontrib><creatorcontrib>English, Mike</creatorcontrib><collection>Oxford Journals Open Access Collection</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tuti, Timothy</au><au>Bitok, Michael</au><au>Paton, Chris</au><au>Makone, Boniface</au><au>Malla, Lucas</au><au>Muinga, Naomi</au><au>Gathara, David</au><au>English, Mike</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Innovating to enhance clinical data management using non-commercial and open source solutions across a multi-center network supporting inpatient pediatric care and research in Kenya</atitle><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle><addtitle>J Am Med Inform Assoc</addtitle><date>2016-01-01</date><risdate>2016</risdate><volume>23</volume><issue>1</issue><spage>184</spage><epage>192</epage><pages>184-192</pages><issn>1067-5027</issn><eissn>1527-974X</eissn><abstract>Objective To share approaches and innovations adopted to deliver a relatively inexpensive clinical data management (CDM) framework within a low-income setting that aims to deliver quality pediatric data useful for supporting research, strengthening the information culture and informing improvement efforts in local clinical practice.
Materials and methods The authors implemented a CDM framework to support a Clinical Information Network (CIN) using Research Electronic Data Capture (REDCap), a noncommercial software solution designed for rapid development and deployment of electronic data capture tools. It was used for collection of standardized data from case records of multiple hospitals’ pediatric wards. R, an open-source statistical language, was used for data quality enhancement, analysis, and report generation for the hospitals.
Results In the first year of CIN, the authors have developed innovative solutions to support the implementation of a secure, rapid pediatric data collection system spanning 14 hospital sites with stringent data quality checks. Data have been collated on over 37 000 admission episodes, with considerable improvement in clinical documentation of admissions observed. Using meta-programming techniques in R, coupled with branching logic, randomization, data lookup, and Application Programming Interface (API) features offered by REDCap, CDM tasks were configured and automated to ensure quality data was delivered for clinical improvement and research use.
Conclusion A low-cost clinically focused but geographically dispersed quality CDM (Clinical Data Management) in a long-term, multi-site, and real world context can be achieved and sustained and challenges can be overcome through thoughtful design and implementation of open-source tools for handling data and supporting research.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>26063746</pmid><doi>10.1093/jamia/ocv028</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Biomedical Research Child Clinical Trials as Topic Data Collection - methods Hospitalization Humans Information Storage and Retrieval - methods Kenya Ownership Pediatrics Research and Applications Software |
title | Innovating to enhance clinical data management using non-commercial and open source solutions across a multi-center network supporting inpatient pediatric care and research in Kenya |
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