Defining an additivity framework for mixture research in inducible whole-cell biosensors

A novel additivity framework for mixture effect modelling in the context of whole cell inducible biosensors has been mathematically developed and implemented in R. The proposed method is a multivariate extension of the effective dose ( ED p ) concept. Specifically, the extension accounts for differe...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Scientific reports 2015-11, Vol.5 (1), p.17200-17200, Article 17200
Hauptverfasser: Martin-Betancor, K., Ritz, C., Fernández-Piñas, F., Leganés, F., Rodea-Palomares, I.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 17200
container_issue 1
container_start_page 17200
container_title Scientific reports
container_volume 5
creator Martin-Betancor, K.
Ritz, C.
Fernández-Piñas, F.
Leganés, F.
Rodea-Palomares, I.
description A novel additivity framework for mixture effect modelling in the context of whole cell inducible biosensors has been mathematically developed and implemented in R. The proposed method is a multivariate extension of the effective dose ( ED p ) concept. Specifically, the extension accounts for differential maximal effects among analytes and response inhibition beyond the maximum permissive concentrations. This allows a multivariate extension of Loewe additivity , enabling direct application in a biphasic dose-response framework. The proposed additivity definition was validated and its applicability illustrated by studying the response of the cyanobacterial biosensor Synechococcus elongatus PCC 7942 pBG2120 to binary mixtures of Zn, Cu, Cd, Ag, Co and Hg. The novel method allowed by the first time to model complete dose-response profiles of an inducible whole cell biosensor to mixtures. In addition, the approach also allowed identification and quantification of departures from additivity (interactions) among analytes. The biosensor was found to respond in a near additive way to heavy metal mixtures except when Hg, Co and Ag were present, in which case strong interactions occurred. The method is a useful contribution for the whole cell biosensors discipline and related areas allowing to perform appropriate assessment of mixture effects in non-monotonic dose-response frameworks
doi_str_mv 10.1038/srep17200
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4660423</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1738481792</sourcerecordid><originalsourceid>FETCH-LOGICAL-c410t-2f11fa32ba63fcff5a503200f98a0cc8e2430494d30a7c442e7b6d91f72a91193</originalsourceid><addsrcrecordid>eNptkUlrHDEQhUWIyQy2D_kDRsfE0La2XnQJBO8w4IsNuQm1ujSjSbc0kbq9_HvLjD04YCGQ4H28qnqF0HdKTijhzWmKsKE1I-QLmjMiyoJxxr5--M_QYUprkk_JpKDyG5qxqiKVrMs5-nMO1nnnl1h7rLvOje7Bjc_YRj3AY4h_sQ0RD-5pnCLgCAl0NCvsfL7dZFzbA35chR4KA32PWxcS-BRiOkB7VvcJDt_efXR_eXF3dl0sbq9uzn4vCiMoGQtmKbWas1ZX3BprS10SnoexstHEmAaY4ERI0XGiayMEg7qtOkltzbSkVPJ99Gvru5naAToDfoy6V5voBh2fVdBO_a94t1LL8KBEzkAwng1-vBnE8G-CNKrBpddhtIcwJUVr3oiG1pJl9OcWNTGknLvdlaFEvS5D7ZaR2aOPfe3I9-gzcLwFUpb8EqJahyn6nNUnbi-6SpVC</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1738481792</pqid></control><display><type>article</type><title>Defining an additivity framework for mixture research in inducible whole-cell biosensors</title><source>Nature Open Access</source><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>Springer Nature OA/Free Journals</source><source>Free Full-Text Journals in Chemistry</source><creator>Martin-Betancor, K. ; Ritz, C. ; Fernández-Piñas, F. ; Leganés, F. ; Rodea-Palomares, I.</creator><creatorcontrib>Martin-Betancor, K. ; Ritz, C. ; Fernández-Piñas, F. ; Leganés, F. ; Rodea-Palomares, I.</creatorcontrib><description>A novel additivity framework for mixture effect modelling in the context of whole cell inducible biosensors has been mathematically developed and implemented in R. The proposed method is a multivariate extension of the effective dose ( ED p ) concept. Specifically, the extension accounts for differential maximal effects among analytes and response inhibition beyond the maximum permissive concentrations. This allows a multivariate extension of Loewe additivity , enabling direct application in a biphasic dose-response framework. The proposed additivity definition was validated and its applicability illustrated by studying the response of the cyanobacterial biosensor Synechococcus elongatus PCC 7942 pBG2120 to binary mixtures of Zn, Cu, Cd, Ag, Co and Hg. The novel method allowed by the first time to model complete dose-response profiles of an inducible whole cell biosensor to mixtures. In addition, the approach also allowed identification and quantification of departures from additivity (interactions) among analytes. The biosensor was found to respond in a near additive way to heavy metal mixtures except when Hg, Co and Ag were present, in which case strong interactions occurred. The method is a useful contribution for the whole cell biosensors discipline and related areas allowing to perform appropriate assessment of mixture effects in non-monotonic dose-response frameworks</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/srep17200</identifier><identifier>PMID: 26606975</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>38 ; 38/44 ; 38/47 ; 631/1647/2017/1958 ; 631/326/2522 ; 639/705/531 ; 639/705/794 ; 96/10 ; Biosensing Techniques - methods ; Cells - metabolism ; Humanities and Social Sciences ; Models, Theoretical ; multidisciplinary ; Regression Analysis ; Reproducibility of Results ; Science ; Synechococcus</subject><ispartof>Scientific reports, 2015-11, Vol.5 (1), p.17200-17200, Article 17200</ispartof><rights>The Author(s) 2015</rights><rights>Copyright © 2015, Macmillan Publishers Limited 2015 Macmillan Publishers Limited</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c410t-2f11fa32ba63fcff5a503200f98a0cc8e2430494d30a7c442e7b6d91f72a91193</citedby><cites>FETCH-LOGICAL-c410t-2f11fa32ba63fcff5a503200f98a0cc8e2430494d30a7c442e7b6d91f72a91193</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660423/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660423/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,27926,27927,41122,42191,51578,53793,53795</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26606975$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Martin-Betancor, K.</creatorcontrib><creatorcontrib>Ritz, C.</creatorcontrib><creatorcontrib>Fernández-Piñas, F.</creatorcontrib><creatorcontrib>Leganés, F.</creatorcontrib><creatorcontrib>Rodea-Palomares, I.</creatorcontrib><title>Defining an additivity framework for mixture research in inducible whole-cell biosensors</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>A novel additivity framework for mixture effect modelling in the context of whole cell inducible biosensors has been mathematically developed and implemented in R. The proposed method is a multivariate extension of the effective dose ( ED p ) concept. Specifically, the extension accounts for differential maximal effects among analytes and response inhibition beyond the maximum permissive concentrations. This allows a multivariate extension of Loewe additivity , enabling direct application in a biphasic dose-response framework. The proposed additivity definition was validated and its applicability illustrated by studying the response of the cyanobacterial biosensor Synechococcus elongatus PCC 7942 pBG2120 to binary mixtures of Zn, Cu, Cd, Ag, Co and Hg. The novel method allowed by the first time to model complete dose-response profiles of an inducible whole cell biosensor to mixtures. In addition, the approach also allowed identification and quantification of departures from additivity (interactions) among analytes. The biosensor was found to respond in a near additive way to heavy metal mixtures except when Hg, Co and Ag were present, in which case strong interactions occurred. The method is a useful contribution for the whole cell biosensors discipline and related areas allowing to perform appropriate assessment of mixture effects in non-monotonic dose-response frameworks</description><subject>38</subject><subject>38/44</subject><subject>38/47</subject><subject>631/1647/2017/1958</subject><subject>631/326/2522</subject><subject>639/705/531</subject><subject>639/705/794</subject><subject>96/10</subject><subject>Biosensing Techniques - methods</subject><subject>Cells - metabolism</subject><subject>Humanities and Social Sciences</subject><subject>Models, Theoretical</subject><subject>multidisciplinary</subject><subject>Regression Analysis</subject><subject>Reproducibility of Results</subject><subject>Science</subject><subject>Synechococcus</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><recordid>eNptkUlrHDEQhUWIyQy2D_kDRsfE0La2XnQJBO8w4IsNuQm1ujSjSbc0kbq9_HvLjD04YCGQ4H28qnqF0HdKTijhzWmKsKE1I-QLmjMiyoJxxr5--M_QYUprkk_JpKDyG5qxqiKVrMs5-nMO1nnnl1h7rLvOje7Bjc_YRj3AY4h_sQ0RD-5pnCLgCAl0NCvsfL7dZFzbA35chR4KA32PWxcS-BRiOkB7VvcJDt_efXR_eXF3dl0sbq9uzn4vCiMoGQtmKbWas1ZX3BprS10SnoexstHEmAaY4ERI0XGiayMEg7qtOkltzbSkVPJ99Gvru5naAToDfoy6V5voBh2fVdBO_a94t1LL8KBEzkAwng1-vBnE8G-CNKrBpddhtIcwJUVr3oiG1pJl9OcWNTGknLvdlaFEvS5D7ZaR2aOPfe3I9-gzcLwFUpb8EqJahyn6nNUnbi-6SpVC</recordid><startdate>20151126</startdate><enddate>20151126</enddate><creator>Martin-Betancor, K.</creator><creator>Ritz, C.</creator><creator>Fernández-Piñas, F.</creator><creator>Leganés, F.</creator><creator>Rodea-Palomares, I.</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20151126</creationdate><title>Defining an additivity framework for mixture research in inducible whole-cell biosensors</title><author>Martin-Betancor, K. ; Ritz, C. ; Fernández-Piñas, F. ; Leganés, F. ; Rodea-Palomares, I.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c410t-2f11fa32ba63fcff5a503200f98a0cc8e2430494d30a7c442e7b6d91f72a91193</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>38</topic><topic>38/44</topic><topic>38/47</topic><topic>631/1647/2017/1958</topic><topic>631/326/2522</topic><topic>639/705/531</topic><topic>639/705/794</topic><topic>96/10</topic><topic>Biosensing Techniques - methods</topic><topic>Cells - metabolism</topic><topic>Humanities and Social Sciences</topic><topic>Models, Theoretical</topic><topic>multidisciplinary</topic><topic>Regression Analysis</topic><topic>Reproducibility of Results</topic><topic>Science</topic><topic>Synechococcus</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Martin-Betancor, K.</creatorcontrib><creatorcontrib>Ritz, C.</creatorcontrib><creatorcontrib>Fernández-Piñas, F.</creatorcontrib><creatorcontrib>Leganés, F.</creatorcontrib><creatorcontrib>Rodea-Palomares, I.</creatorcontrib><collection>Springer Nature OA/Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Martin-Betancor, K.</au><au>Ritz, C.</au><au>Fernández-Piñas, F.</au><au>Leganés, F.</au><au>Rodea-Palomares, I.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Defining an additivity framework for mixture research in inducible whole-cell biosensors</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2015-11-26</date><risdate>2015</risdate><volume>5</volume><issue>1</issue><spage>17200</spage><epage>17200</epage><pages>17200-17200</pages><artnum>17200</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>A novel additivity framework for mixture effect modelling in the context of whole cell inducible biosensors has been mathematically developed and implemented in R. The proposed method is a multivariate extension of the effective dose ( ED p ) concept. Specifically, the extension accounts for differential maximal effects among analytes and response inhibition beyond the maximum permissive concentrations. This allows a multivariate extension of Loewe additivity , enabling direct application in a biphasic dose-response framework. The proposed additivity definition was validated and its applicability illustrated by studying the response of the cyanobacterial biosensor Synechococcus elongatus PCC 7942 pBG2120 to binary mixtures of Zn, Cu, Cd, Ag, Co and Hg. The novel method allowed by the first time to model complete dose-response profiles of an inducible whole cell biosensor to mixtures. In addition, the approach also allowed identification and quantification of departures from additivity (interactions) among analytes. The biosensor was found to respond in a near additive way to heavy metal mixtures except when Hg, Co and Ag were present, in which case strong interactions occurred. The method is a useful contribution for the whole cell biosensors discipline and related areas allowing to perform appropriate assessment of mixture effects in non-monotonic dose-response frameworks</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>26606975</pmid><doi>10.1038/srep17200</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2045-2322
ispartof Scientific reports, 2015-11, Vol.5 (1), p.17200-17200, Article 17200
issn 2045-2322
2045-2322
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4660423
source Nature Open Access; MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Springer Nature OA/Free Journals; Free Full-Text Journals in Chemistry
subjects 38
38/44
38/47
631/1647/2017/1958
631/326/2522
639/705/531
639/705/794
96/10
Biosensing Techniques - methods
Cells - metabolism
Humanities and Social Sciences
Models, Theoretical
multidisciplinary
Regression Analysis
Reproducibility of Results
Science
Synechococcus
title Defining an additivity framework for mixture research in inducible whole-cell biosensors
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-18T08%3A54%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Defining%20an%20additivity%20framework%20for%20mixture%20research%20in%20inducible%20whole-cell%20biosensors&rft.jtitle=Scientific%20reports&rft.au=Martin-Betancor,%20K.&rft.date=2015-11-26&rft.volume=5&rft.issue=1&rft.spage=17200&rft.epage=17200&rft.pages=17200-17200&rft.artnum=17200&rft.issn=2045-2322&rft.eissn=2045-2322&rft_id=info:doi/10.1038/srep17200&rft_dat=%3Cproquest_pubme%3E1738481792%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1738481792&rft_id=info:pmid/26606975&rfr_iscdi=true