Viral and bacterial etiology of severe acute respiratory illness among children < 5 years of age without influenza in Niger
Globally, pneumonia is the leading cause of morbidity and mortality in children, with the highest burden experienced in sub-Saharan Africa and Asia. However, there is a dearth of information on the etiology of severe acute respiratory illness (SARI) in Africa, including Niger. We implemented a retro...
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| Veröffentlicht in: | BMC infectious diseases 2015-11, Vol.15 (514), p.515-515, Article 515 |
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| creator | Lagare, Adamou Maïnassara, Halima Boubacar Issaka, Bassira Sidiki, Ali Tempia, Stefano |
| description | Globally, pneumonia is the leading cause of morbidity and mortality in children, with the highest burden experienced in sub-Saharan Africa and Asia. However, there is a dearth of information on the etiology of severe acute respiratory illness (SARI) in Africa, including Niger.
We implemented a retrospective study as part of national influenza sentinel surveillance in Niger. We randomly selected a sample of nasopharyngeal specimens collected from children |
| doi_str_mv | 10.1186/s12879-015-1251-y |
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We implemented a retrospective study as part of national influenza sentinel surveillance in Niger. We randomly selected a sample of nasopharyngeal specimens collected from children <5 years of age hospitalized with SARI from January 2010 through December 2012 in Niger. The samples were selected from individuals that tested negative by real-time reverse transcription polymerase chain reaction (rRT-PCR) for influenza A and B virus. The samples were analyzed using the Fast Track Diagnostic Respiratory Pathogens 21plus Kit (BioMérieux, Luxemburg), which detects 23 respiratory pathogens including 18 viral and 5 bacterial agents.
Among the 160 samples tested, 138 (86%) tested positive for at least one viral or bacterial pathogen; in 22 (16%) sample, only one pathogen was detected. We detected at least one respiratory virus in 126 (78%) samples and at least one bacterium in 102 (64%) samples. Respiratory syncytial virus (56/160; 35%), rhinovirus (47/160; 29%) and parainfluenza virus (39/160; 24%) were the most common viral pathogens detected. Among bacterial pathogens, Streptococcus pneumoniae (90/160; 56%) and Haemophilus influenzae type b (20/160; 12%) predominated.
The high prevalence of certain viral and bacterial pathogens among children <5 years of age with SARI highlights the need for continued and expanded surveillance in Niger.</description><identifier>ISSN: 1471-2334</identifier><identifier>EISSN: 1471-2334</identifier><identifier>DOI: 10.1186/s12879-015-1251-y</identifier><identifier>PMID: 26567015</identifier><language>eng</language><publisher>England: BioMed Central Ltd</publisher><subject>Acute respiratory distress syndrome ; Analysis ; Bacteriology ; Care and treatment ; Child, Preschool ; Complications and side effects ; Female ; Humans ; Infant ; Infectious diseases ; Influenza ; Life Sciences ; Male ; Microbiology and Parasitology ; Mortality ; Nasopharynx - microbiology ; Nasopharynx - virology ; Niger ; Niger - epidemiology ; Pneumococcal Infections - epidemiology ; Pneumococcal Infections - microbiology ; Respiratory Syncytial Virus Infections - epidemiology ; Respiratory Syncytial Virus Infections - virology ; Respiratory Syncytial Viruses - genetics ; Respiratory Syncytial Viruses - isolation & purification ; Respiratory Syncytial Viruses - pathogenicity ; Respiratory Tract Infections - epidemiology ; Respiratory Tract Infections - microbiology ; Respiratory Tract Infections - virology ; Respirovirus - isolation & purification ; Respirovirus - pathogenicity ; Respirovirus Infections - epidemiology ; Respirovirus Infections - virology ; Retrospective Studies ; Rhinovirus - isolation & purification ; Rhinovirus - pathogenicity ; Risk factors ; Streptococcus pneumoniae - isolation & purification ; Streptococcus pneumoniae - pathogenicity ; Virology</subject><ispartof>BMC infectious diseases, 2015-11, Vol.15 (514), p.515-515, Article 515</ispartof><rights>COPYRIGHT 2015 BioMed Central Ltd.</rights><rights>Copyright BioMed Central 2015</rights><rights>Attribution</rights><rights>Lagare et al. 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c600t-75e063f983650e5a7b649faa7b9170f2cc35f17f4dbb62622a3ae0d0504e7c803</citedby><cites>FETCH-LOGICAL-c600t-75e063f983650e5a7b649faa7b9170f2cc35f17f4dbb62622a3ae0d0504e7c803</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644278/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644278/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26567015$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://riip.hal.science/pasteur-01331809$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Lagare, Adamou</creatorcontrib><creatorcontrib>Maïnassara, Halima Boubacar</creatorcontrib><creatorcontrib>Issaka, Bassira</creatorcontrib><creatorcontrib>Sidiki, Ali</creatorcontrib><creatorcontrib>Tempia, Stefano</creatorcontrib><title>Viral and bacterial etiology of severe acute respiratory illness among children < 5 years of age without influenza in Niger</title><title>BMC infectious diseases</title><addtitle>BMC Infect Dis</addtitle><description>Globally, pneumonia is the leading cause of morbidity and mortality in children, with the highest burden experienced in sub-Saharan Africa and Asia. However, there is a dearth of information on the etiology of severe acute respiratory illness (SARI) in Africa, including Niger.
We implemented a retrospective study as part of national influenza sentinel surveillance in Niger. We randomly selected a sample of nasopharyngeal specimens collected from children <5 years of age hospitalized with SARI from January 2010 through December 2012 in Niger. The samples were selected from individuals that tested negative by real-time reverse transcription polymerase chain reaction (rRT-PCR) for influenza A and B virus. The samples were analyzed using the Fast Track Diagnostic Respiratory Pathogens 21plus Kit (BioMérieux, Luxemburg), which detects 23 respiratory pathogens including 18 viral and 5 bacterial agents.
Among the 160 samples tested, 138 (86%) tested positive for at least one viral or bacterial pathogen; in 22 (16%) sample, only one pathogen was detected. We detected at least one respiratory virus in 126 (78%) samples and at least one bacterium in 102 (64%) samples. Respiratory syncytial virus (56/160; 35%), rhinovirus (47/160; 29%) and parainfluenza virus (39/160; 24%) were the most common viral pathogens detected. Among bacterial pathogens, Streptococcus pneumoniae (90/160; 56%) and Haemophilus influenzae type b (20/160; 12%) predominated.
The high prevalence of certain viral and bacterial pathogens among children <5 years of age with SARI highlights the need for continued and expanded surveillance in Niger.</description><subject>Acute respiratory distress syndrome</subject><subject>Analysis</subject><subject>Bacteriology</subject><subject>Care and treatment</subject><subject>Child, Preschool</subject><subject>Complications and side effects</subject><subject>Female</subject><subject>Humans</subject><subject>Infant</subject><subject>Infectious diseases</subject><subject>Influenza</subject><subject>Life Sciences</subject><subject>Male</subject><subject>Microbiology and Parasitology</subject><subject>Mortality</subject><subject>Nasopharynx - microbiology</subject><subject>Nasopharynx - virology</subject><subject>Niger</subject><subject>Niger - epidemiology</subject><subject>Pneumococcal Infections - epidemiology</subject><subject>Pneumococcal Infections - microbiology</subject><subject>Respiratory Syncytial Virus Infections - epidemiology</subject><subject>Respiratory Syncytial Virus Infections - virology</subject><subject>Respiratory Syncytial Viruses - genetics</subject><subject>Respiratory Syncytial Viruses - isolation & purification</subject><subject>Respiratory Syncytial Viruses - pathogenicity</subject><subject>Respiratory Tract Infections - epidemiology</subject><subject>Respiratory Tract Infections - microbiology</subject><subject>Respiratory Tract Infections - virology</subject><subject>Respirovirus - isolation & purification</subject><subject>Respirovirus - pathogenicity</subject><subject>Respirovirus Infections - epidemiology</subject><subject>Respirovirus Infections - virology</subject><subject>Retrospective Studies</subject><subject>Rhinovirus - isolation & purification</subject><subject>Rhinovirus - pathogenicity</subject><subject>Risk factors</subject><subject>Streptococcus pneumoniae - isolation & purification</subject><subject>Streptococcus pneumoniae - pathogenicity</subject><subject>Virology</subject><issn>1471-2334</issn><issn>1471-2334</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNqNkl1rFDEUhgdRbK3-AG8k4I1eTM3XJDMgwlLUFhYLfvQ2ZDNnZlNmkzXJrI43euvf9JeYZWvtFi8khJwkz_smOTlF8ZjgY0Jq8SISWsumxKQqCa1IOd0pDgmXpKSM8bs34oPiQYyXGBNZ0-Z-cUBFJWSWHRbfL2zQA9KuRQttEgSbZ5CsH3w_Id-hCBsIgLQZE6AAcZ355MOE7DA4iBHplXc9Mks7tAHcrx8_X-ZeoQl0iFsD3QP6YtPSjwlZ1w0juG86R-id7SE8LO51eojw6Go8Kj69ef3x5LScn789O5nNSyMwTqWsAAvWNTUTFYZKy4XgTafz2BCJO2oMqzoiO94uFoIKSjXTgFtcYQ7S1JgdFa92vutxsYLWgEv53Wod7EqHSXlt1f6Os0vV-43ignMq62xQ7gyWt2Sns7la65hgDAoTxkiNmw3J_LOrA4P_PEJMamWjgWHQDvwYFZGM05rxRmT06S300o_B5XRkSjb5xZLTv1SvB1A5kz7f02xN1YzzGldCyK3X8T-o3FpYWeMddDav7wme7wkyk-Br6vUYozr78P7_2fOLfZbsWBN8jAG666QRrLbVq3bVm3NWqW31qilrntz8pGvFn3JlvwEvjusG</recordid><startdate>20151114</startdate><enddate>20151114</enddate><creator>Lagare, Adamou</creator><creator>Maïnassara, Halima Boubacar</creator><creator>Issaka, Bassira</creator><creator>Sidiki, Ali</creator><creator>Tempia, Stefano</creator><general>BioMed Central Ltd</general><general>BioMed Central</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QL</scope><scope>7T2</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>COVID</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope></search><sort><creationdate>20151114</creationdate><title>Viral and bacterial etiology of severe acute respiratory illness among children < 5 years of age without influenza in Niger</title><author>Lagare, Adamou ; Maïnassara, Halima Boubacar ; Issaka, Bassira ; Sidiki, Ali ; Tempia, Stefano</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c600t-75e063f983650e5a7b649faa7b9170f2cc35f17f4dbb62622a3ae0d0504e7c803</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Acute respiratory distress syndrome</topic><topic>Analysis</topic><topic>Bacteriology</topic><topic>Care and treatment</topic><topic>Child, Preschool</topic><topic>Complications and side effects</topic><topic>Female</topic><topic>Humans</topic><topic>Infant</topic><topic>Infectious diseases</topic><topic>Influenza</topic><topic>Life Sciences</topic><topic>Male</topic><topic>Microbiology and Parasitology</topic><topic>Mortality</topic><topic>Nasopharynx - microbiology</topic><topic>Nasopharynx - virology</topic><topic>Niger</topic><topic>Niger - epidemiology</topic><topic>Pneumococcal Infections - epidemiology</topic><topic>Pneumococcal Infections - microbiology</topic><topic>Respiratory Syncytial Virus Infections - epidemiology</topic><topic>Respiratory Syncytial Virus Infections - virology</topic><topic>Respiratory Syncytial Viruses - genetics</topic><topic>Respiratory Syncytial Viruses - isolation & purification</topic><topic>Respiratory Syncytial Viruses - pathogenicity</topic><topic>Respiratory Tract Infections - epidemiology</topic><topic>Respiratory Tract Infections - microbiology</topic><topic>Respiratory Tract Infections - virology</topic><topic>Respirovirus - isolation & purification</topic><topic>Respirovirus - pathogenicity</topic><topic>Respirovirus Infections - epidemiology</topic><topic>Respirovirus Infections - virology</topic><topic>Retrospective Studies</topic><topic>Rhinovirus - isolation & purification</topic><topic>Rhinovirus - pathogenicity</topic><topic>Risk factors</topic><topic>Streptococcus pneumoniae - isolation & purification</topic><topic>Streptococcus pneumoniae - pathogenicity</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lagare, Adamou</creatorcontrib><creatorcontrib>Maïnassara, Halima Boubacar</creatorcontrib><creatorcontrib>Issaka, Bassira</creatorcontrib><creatorcontrib>Sidiki, Ali</creatorcontrib><creatorcontrib>Tempia, Stefano</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Public Health Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>Coronavirus Research Database</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>BMC infectious diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lagare, Adamou</au><au>Maïnassara, Halima Boubacar</au><au>Issaka, Bassira</au><au>Sidiki, Ali</au><au>Tempia, Stefano</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Viral and bacterial etiology of severe acute respiratory illness among children < 5 years of age without influenza in Niger</atitle><jtitle>BMC infectious diseases</jtitle><addtitle>BMC Infect Dis</addtitle><date>2015-11-14</date><risdate>2015</risdate><volume>15</volume><issue>514</issue><spage>515</spage><epage>515</epage><pages>515-515</pages><artnum>515</artnum><issn>1471-2334</issn><eissn>1471-2334</eissn><abstract>Globally, pneumonia is the leading cause of morbidity and mortality in children, with the highest burden experienced in sub-Saharan Africa and Asia. However, there is a dearth of information on the etiology of severe acute respiratory illness (SARI) in Africa, including Niger.
We implemented a retrospective study as part of national influenza sentinel surveillance in Niger. We randomly selected a sample of nasopharyngeal specimens collected from children <5 years of age hospitalized with SARI from January 2010 through December 2012 in Niger. The samples were selected from individuals that tested negative by real-time reverse transcription polymerase chain reaction (rRT-PCR) for influenza A and B virus. The samples were analyzed using the Fast Track Diagnostic Respiratory Pathogens 21plus Kit (BioMérieux, Luxemburg), which detects 23 respiratory pathogens including 18 viral and 5 bacterial agents.
Among the 160 samples tested, 138 (86%) tested positive for at least one viral or bacterial pathogen; in 22 (16%) sample, only one pathogen was detected. We detected at least one respiratory virus in 126 (78%) samples and at least one bacterium in 102 (64%) samples. Respiratory syncytial virus (56/160; 35%), rhinovirus (47/160; 29%) and parainfluenza virus (39/160; 24%) were the most common viral pathogens detected. Among bacterial pathogens, Streptococcus pneumoniae (90/160; 56%) and Haemophilus influenzae type b (20/160; 12%) predominated.
The high prevalence of certain viral and bacterial pathogens among children <5 years of age with SARI highlights the need for continued and expanded surveillance in Niger.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>26567015</pmid><doi>10.1186/s12879-015-1251-y</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Acute respiratory distress syndrome Analysis Bacteriology Care and treatment Child, Preschool Complications and side effects Female Humans Infant Infectious diseases Influenza Life Sciences Male Microbiology and Parasitology Mortality Nasopharynx - microbiology Nasopharynx - virology Niger Niger - epidemiology Pneumococcal Infections - epidemiology Pneumococcal Infections - microbiology Respiratory Syncytial Virus Infections - epidemiology Respiratory Syncytial Virus Infections - virology Respiratory Syncytial Viruses - genetics Respiratory Syncytial Viruses - isolation & purification Respiratory Syncytial Viruses - pathogenicity Respiratory Tract Infections - epidemiology Respiratory Tract Infections - microbiology Respiratory Tract Infections - virology Respirovirus - isolation & purification Respirovirus - pathogenicity Respirovirus Infections - epidemiology Respirovirus Infections - virology Retrospective Studies Rhinovirus - isolation & purification Rhinovirus - pathogenicity Risk factors Streptococcus pneumoniae - isolation & purification Streptococcus pneumoniae - pathogenicity Virology |
| title | Viral and bacterial etiology of severe acute respiratory illness among children < 5 years of age without influenza in Niger |
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