Three-dimensional super-resolution protein localization correlated with vitrified cellular context

We demonstrate the use of cryogenic super-resolution correlative light and electron microscopy (csCLEM) to precisely determine the spatial relationship between proteins and their native cellular structures. Several fluorescent proteins (FPs) were found to be photoswitchable and emitted far more phot...

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Veröffentlicht in:Scientific reports 2015-10, Vol.5 (1), p.13017-13017, Article 13017
Hauptverfasser: Liu, Bei, Xue, Yanhong, Zhao, Wei, Chen, Yan, Fan, Chunyan, Gu, Lusheng, Zhang, Yongdeng, Zhang, Xiang, Sun, Lei, Huang, Xiaojun, Ding, Wei, Sun, Fei, Ji, Wei, Xu, Tao
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container_title Scientific reports
container_volume 5
creator Liu, Bei
Xue, Yanhong
Zhao, Wei
Chen, Yan
Fan, Chunyan
Gu, Lusheng
Zhang, Yongdeng
Zhang, Xiang
Sun, Lei
Huang, Xiaojun
Ding, Wei
Sun, Fei
Ji, Wei
Xu, Tao
description We demonstrate the use of cryogenic super-resolution correlative light and electron microscopy (csCLEM) to precisely determine the spatial relationship between proteins and their native cellular structures. Several fluorescent proteins (FPs) were found to be photoswitchable and emitted far more photons under our cryogenic imaging condition, resulting in higher localization precision which is comparable to ambient super-resolution imaging. Vitrified specimens were prepared by high pressure freezing and cryo-sectioning to maintain a near-native state with better fluorescence preservation. A 2-3-fold improvement of resolution over the recent reports was achieved due to the photon budget performance of screening out Dronpa and optimized imaging conditions, even with thin sections which is at a disadvantage when calculate the structure resolution from label density. We extended csCLEM to mammalian cells by introducing cryo-sectioning and observed good correlation of a mitochondrial protein with the mitochondrial outer membrane at nanometer resolution in three dimensions.
doi_str_mv 10.1038/srep13017
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Xue, Yanhong ; Zhao, Wei ; Chen, Yan ; Fan, Chunyan ; Gu, Lusheng ; Zhang, Yongdeng ; Zhang, Xiang ; Sun, Lei ; Huang, Xiaojun ; Ding, Wei ; Sun, Fei ; Ji, Wei ; Xu, Tao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c438t-29a6e93cf649c4f58610c4e422a72445d2bc83625e55bf581756d3896d34266f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>631/57/2265</topic><topic>631/57/2282</topic><topic>Cryopreservation - instrumentation</topic><topic>Cryopreservation - methods</topic><topic>Electron microscopy</topic><topic>Equipment Design</topic><topic>Equipment Failure Analysis</topic><topic>Freezing</topic><topic>HEK293 Cells</topic><topic>High pressure</topic><topic>Humanities and Social Sciences</topic><topic>Humans</topic><topic>Image Enhancement - instrumentation</topic><topic>Image Enhancement - methods</topic><topic>Imaging, Three-Dimensional - instrumentation</topic><topic>Imaging, Three-Dimensional - methods</topic><topic>Localization</topic><topic>Mammalian cells</topic><topic>Micro-Electrical-Mechanical Systems - instrumentation</topic><topic>Micro-Electrical-Mechanical Systems - methods</topic><topic>Microscopy, Electron - instrumentation</topic><topic>Microscopy, Fluorescence - instrumentation</topic><topic>Microscopy, Fluorescence - methods</topic><topic>Mitochondria</topic><topic>Molecular Imaging - instrumentation</topic><topic>Molecular Imaging - methods</topic><topic>multidisciplinary</topic><topic>Multimodal Imaging - instrumentation</topic><topic>Multimodal Imaging - methods</topic><topic>Preservation</topic><topic>Proteins - metabolism</topic><topic>Reproducibility of Results</topic><topic>Science</topic><topic>Sectioning</topic><topic>Sensitivity and Specificity</topic><topic>Statistics as Topic</topic><topic>Subcellular Fractions - metabolism</topic><topic>Tissue Distribution</topic><topic>Vitrification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Bei</creatorcontrib><creatorcontrib>Xue, Yanhong</creatorcontrib><creatorcontrib>Zhao, Wei</creatorcontrib><creatorcontrib>Chen, Yan</creatorcontrib><creatorcontrib>Fan, Chunyan</creatorcontrib><creatorcontrib>Gu, Lusheng</creatorcontrib><creatorcontrib>Zhang, Yongdeng</creatorcontrib><creatorcontrib>Zhang, Xiang</creatorcontrib><creatorcontrib>Sun, Lei</creatorcontrib><creatorcontrib>Huang, Xiaojun</creatorcontrib><creatorcontrib>Ding, Wei</creatorcontrib><creatorcontrib>Sun, Fei</creatorcontrib><creatorcontrib>Ji, Wei</creatorcontrib><creatorcontrib>Xu, Tao</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health &amp; 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We extended csCLEM to mammalian cells by introducing cryo-sectioning and observed good correlation of a mitochondrial protein with the mitochondrial outer membrane at nanometer resolution in three dimensions.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>26462878</pmid><doi>10.1038/srep13017</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
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subjects 631/57/2265
631/57/2282
Cryopreservation - instrumentation
Cryopreservation - methods
Electron microscopy
Equipment Design
Equipment Failure Analysis
Freezing
HEK293 Cells
High pressure
Humanities and Social Sciences
Humans
Image Enhancement - instrumentation
Image Enhancement - methods
Imaging, Three-Dimensional - instrumentation
Imaging, Three-Dimensional - methods
Localization
Mammalian cells
Micro-Electrical-Mechanical Systems - instrumentation
Micro-Electrical-Mechanical Systems - methods
Microscopy, Electron - instrumentation
Microscopy, Fluorescence - instrumentation
Microscopy, Fluorescence - methods
Mitochondria
Molecular Imaging - instrumentation
Molecular Imaging - methods
multidisciplinary
Multimodal Imaging - instrumentation
Multimodal Imaging - methods
Preservation
Proteins - metabolism
Reproducibility of Results
Science
Sectioning
Sensitivity and Specificity
Statistics as Topic
Subcellular Fractions - metabolism
Tissue Distribution
Vitrification
title Three-dimensional super-resolution protein localization correlated with vitrified cellular context
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