Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata
Members of the gammaproteobacterial genus Halomonas are common in marine environments. Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surf...
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| Veröffentlicht in: | Standards in genomic sciences 2015-10, Vol.10 (1), p.75, Article 75 |
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| creator | Meyer, Julie L Dillard, Brian A Rodgers, John M Ritchie, Kim B Paul, Valerie J Teplitski, Max |
| description | Members of the gammaproteobacterial genus Halomonas are common in marine environments. Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surface mucus layer of the scleractinian coral Acropora palmata in 2005 from the Florida Keys. This strain was chosen for genome sequencing to provide insight into the role of commensal heterotrophic bacteria in the coral holobiont. The draft genome consists of 290 scaffolds, totaling 3.5 Mbp in length and contains 3397 protein-coding genes. |
| doi_str_mv | 10.1186/s40793-015-0069-y |
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Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surface mucus layer of the scleractinian coral Acropora palmata in 2005 from the Florida Keys. This strain was chosen for genome sequencing to provide insight into the role of commensal heterotrophic bacteria in the coral holobiont. 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Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surface mucus layer of the scleractinian coral Acropora palmata in 2005 from the Florida Keys. This strain was chosen for genome sequencing to provide insight into the role of commensal heterotrophic bacteria in the coral holobiont. The draft genome consists of 290 scaffolds, totaling 3.5 Mbp in length and contains 3397 protein-coding genes.</description><subject>Analysis</subject><subject>DNA sequencing</subject><subject>Elkhorn coral</subject><subject>Genetic aspects</subject><subject>Halomonas</subject><subject>Microbiota (Symbiotic organisms)</subject><subject>Physiological aspects</subject><subject>Short Genome Report</subject><issn>1944-3277</issn><issn>1944-3277</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNptUU1rGzEQFaGlCWl-QC9B0PMmq9WXdSkYN20KgUJJzmJWO7LV7kqutA74D_R3V8ZpSKCag4aZ9x4z8wj5wNorxhbquohWG960TDZtq0yzPyFnzAjR8E7rNy_yU3JRys-2Pm60EeYdOe2UkKzj6oz8-ZzBz3SNMU1IC_7eYXRIk6e3MKYpRSh0whyGABHoDzZzGkoaYcaB-pwmOm8qbZc9VNYUXE59SDMcBA6dFeTQ9wiR3oy_NilH6lKGkS4rcFszuoVxghnek7cexoIXT_85efhyc7-6be6-f_22Wt41ThgzN0p0qjOy96BRGK019k5qKYAPusPOC9Yh05wZZ5QRHBe8HbTXistaa4Xj5-TTUXe76yccHMa5jmO3OUyQ9zZBsK87MWzsOj1aIY3mhleBj0eBNYxoQ_SpwtwUirNLKZhaCKlkRV39B1VjwHqjFNGHWn9FYEdCvUspGf3zSKy1B7vt0W5b7bYHu-2-ci5f7vLM-Gcu_wtE6Kan</recordid><startdate>20151007</startdate><enddate>20151007</enddate><creator>Meyer, Julie L</creator><creator>Dillard, Brian A</creator><creator>Rodgers, John M</creator><creator>Ritchie, Kim B</creator><creator>Paul, Valerie J</creator><creator>Teplitski, Max</creator><general>BioMed Central Ltd</general><general>BioMed Central</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>20151007</creationdate><title>Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata</title><author>Meyer, Julie L ; Dillard, Brian A ; Rodgers, John M ; Ritchie, Kim B ; Paul, Valerie J ; Teplitski, Max</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c499t-6426295bfa7e49777ebc5754a3d72e2f412e17319c96943e830d7f763531904c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Analysis</topic><topic>DNA sequencing</topic><topic>Elkhorn coral</topic><topic>Genetic aspects</topic><topic>Halomonas</topic><topic>Microbiota (Symbiotic organisms)</topic><topic>Physiological aspects</topic><topic>Short Genome Report</topic><toplevel>online_resources</toplevel><creatorcontrib>Meyer, Julie L</creatorcontrib><creatorcontrib>Dillard, Brian A</creatorcontrib><creatorcontrib>Rodgers, John M</creatorcontrib><creatorcontrib>Ritchie, Kim B</creatorcontrib><creatorcontrib>Paul, Valerie J</creatorcontrib><creatorcontrib>Teplitski, Max</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Standards in genomic sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Meyer, Julie L</au><au>Dillard, Brian A</au><au>Rodgers, John M</au><au>Ritchie, Kim B</au><au>Paul, Valerie J</au><au>Teplitski, Max</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata</atitle><jtitle>Standards in genomic sciences</jtitle><addtitle>Stand Genomic Sci</addtitle><date>2015-10-07</date><risdate>2015</risdate><volume>10</volume><issue>1</issue><spage>75</spage><pages>75-</pages><artnum>75</artnum><issn>1944-3277</issn><eissn>1944-3277</eissn><abstract>Members of the gammaproteobacterial genus Halomonas are common in marine environments. 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| source | DOAJ Directory of Open Access Journals; PubMed Central; Alma/SFX Local Collection; PubMed Central Open Access |
| subjects | Analysis DNA sequencing Elkhorn coral Genetic aspects Halomonas Microbiota (Symbiotic organisms) Physiological aspects Short Genome Report |
| title | Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata |
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