Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases
Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5′-pyridoxal phosphate (PLP)-dependent stereo- and regiospecific installation of an amino group from an amino acid donor (typically l-Glu or l-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we...
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description | Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5′-pyridoxal phosphate (PLP)-dependent stereo- and regiospecific installation of an amino group from an amino acid donor (typically l-Glu or l-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we report the strategic structural study of two homologous C4 SATs (Micromonospora echinospora CalS13 and Escherichia coli WecE) that utilize identical substrates but differ in their stereochemistry of aminotransfer. This study reveals for the first time a new mode of SAT sugar nucleotide binding and, in conjunction with previously reported SAT structural studies, provides the basis from which to propose a universal model for SAT stereo- and regiochemical control of amine installation. Specifically, the universal model put forth highlights catalytic divergence to derive solely from distinctions within nucleotide sugar orientation upon binding within a relatively fixed SAT active site where the available ligand bound structures of the three out of four representative C3 and C4 SAT examples provide a basis for the overall model. Importantly, this study presents a new predictive model to support SAT functional annotation, biochemical study and rational engineering. |
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Herein we report the strategic structural study of two homologous C4 SATs (Micromonospora echinospora CalS13 and Escherichia coli WecE) that utilize identical substrates but differ in their stereochemistry of aminotransfer. This study reveals for the first time a new mode of SAT sugar nucleotide binding and, in conjunction with previously reported SAT structural studies, provides the basis from which to propose a universal model for SAT stereo- and regiochemical control of amine installation. Specifically, the universal model put forth highlights catalytic divergence to derive solely from distinctions within nucleotide sugar orientation upon binding within a relatively fixed SAT active site where the available ligand bound structures of the three out of four representative C3 and C4 SAT examples provide a basis for the overall model. Importantly, this study presents a new predictive model to support SAT functional annotation, biochemical study and rational engineering.</description><identifier>ISSN: 1554-8929</identifier><identifier>EISSN: 1554-8937</identifier><identifier>DOI: 10.1021/acschembio.5b00244</identifier><identifier>PMID: 26023720</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Amines ; Amines - chemistry ; Amines - metabolism ; Amino Acids - chemistry ; Amino Acids - metabolism ; BASIC BIOLOGICAL SCIENCES ; Binding Sites ; Carbohydrates ; Catalytic Domain ; Chemical structure ; Crystallography, X-Ray ; Escherichia coli - chemistry ; Escherichia coli - enzymology ; Escherichia coli - metabolism ; Escherichia coli Proteins - chemistry ; Escherichia coli Proteins - metabolism ; INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY ; Micromonospora - chemistry ; Micromonospora - enzymology ; Micromonospora - metabolism ; Models, Molecular ; Monomers ; Nucleotides - chemistry ; Nucleotides - metabolism ; Peptides and proteins ; Protein Conformation ; Pyridoxal Phosphate - metabolism ; Substrate Specificity ; Transaminases - chemistry ; Transaminases - metabolism</subject><ispartof>ACS chemical biology, 2015-09, Vol.10 (9), p.2048-2056</ispartof><rights>Copyright © 2015 American Chemical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a534t-aaa4b7986d9e0eed9ec6fd25e56dba86be3a79b50506fc1db632932e9970c47b3</citedby><cites>FETCH-LOGICAL-a534t-aaa4b7986d9e0eed9ec6fd25e56dba86be3a79b50506fc1db632932e9970c47b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acschembio.5b00244$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acschembio.5b00244$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,314,780,784,885,2765,27076,27924,27925,56738,56788</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26023720$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/servlets/purl/1224012$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Fengbin</creatorcontrib><creatorcontrib>Singh, Shanteri</creatorcontrib><creatorcontrib>Xu, Weijun</creatorcontrib><creatorcontrib>Helmich, Kate E</creatorcontrib><creatorcontrib>Miller, Mitchell D</creatorcontrib><creatorcontrib>Cao, Hongnan</creatorcontrib><creatorcontrib>Bingman, Craig A</creatorcontrib><creatorcontrib>Thorson, Jon S</creatorcontrib><creatorcontrib>Phillips, George N</creatorcontrib><creatorcontrib>Argonne National Laboratory (ANL), Argonne, IL (United States)</creatorcontrib><title>Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases</title><title>ACS chemical biology</title><addtitle>ACS Chem. Biol</addtitle><description>Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5′-pyridoxal phosphate (PLP)-dependent stereo- and regiospecific installation of an amino group from an amino acid donor (typically l-Glu or l-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we report the strategic structural study of two homologous C4 SATs (Micromonospora echinospora CalS13 and Escherichia coli WecE) that utilize identical substrates but differ in their stereochemistry of aminotransfer. This study reveals for the first time a new mode of SAT sugar nucleotide binding and, in conjunction with previously reported SAT structural studies, provides the basis from which to propose a universal model for SAT stereo- and regiochemical control of amine installation. Specifically, the universal model put forth highlights catalytic divergence to derive solely from distinctions within nucleotide sugar orientation upon binding within a relatively fixed SAT active site where the available ligand bound structures of the three out of four representative C3 and C4 SAT examples provide a basis for the overall model. Importantly, this study presents a new predictive model to support SAT functional annotation, biochemical study and rational engineering.</description><subject>Amines</subject><subject>Amines - chemistry</subject><subject>Amines - metabolism</subject><subject>Amino Acids - chemistry</subject><subject>Amino Acids - metabolism</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Binding Sites</subject><subject>Carbohydrates</subject><subject>Catalytic Domain</subject><subject>Chemical structure</subject><subject>Crystallography, X-Ray</subject><subject>Escherichia coli - chemistry</subject><subject>Escherichia coli - enzymology</subject><subject>Escherichia coli - metabolism</subject><subject>Escherichia coli Proteins - chemistry</subject><subject>Escherichia coli Proteins - metabolism</subject><subject>INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY</subject><subject>Micromonospora - chemistry</subject><subject>Micromonospora - enzymology</subject><subject>Micromonospora - metabolism</subject><subject>Models, Molecular</subject><subject>Monomers</subject><subject>Nucleotides - chemistry</subject><subject>Nucleotides - metabolism</subject><subject>Peptides and proteins</subject><subject>Protein Conformation</subject><subject>Pyridoxal Phosphate - metabolism</subject><subject>Substrate Specificity</subject><subject>Transaminases - chemistry</subject><subject>Transaminases - metabolism</subject><issn>1554-8929</issn><issn>1554-8937</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kU9vEzEQxS0Eom3gC3BAFicuSf1_4wtSG7VQqYJD4WzZ3tnGZdcuthep3x6XhEAvXGxL896b8fwQekPJihJGT60vfguTC2klHSFMiGfomEoplmvNu-eHN9NH6KSUO0IEV2v9Eh0xRRjvGDlG329qnn2dsx3xuS2h4CFlXLeAbypkSI8Ngm_FTYo1pxGnAZ9NIQK-iqXacbQ1pIhDxJ9nP0KqoW_W-dbm37JUs41lgGwLlFfoxWDHAq_39wJ9u7z4uvm0vP7y8Wpzdr20kou6tNYK1-m16jUQgHZ6NfRMglS9s2vlgNtOO0kkUYOnvVOcac5A64540Tm-QB92ufezm6D30Ca3o7nPYbL5wSQbzNNKDFtzm34aITuphGwB73YBqdRgig8V_NanGMFXQxkThLImer_vktOPGUo1Uyge2kYipLkY2lGuheKNxQKxndTnVEqG4TALJeYRpfmL0uxRNtPbf39xsPxh1wSrnaCZzV2ac2xL_V_iL79zr8k</recordid><startdate>20150918</startdate><enddate>20150918</enddate><creator>Wang, Fengbin</creator><creator>Singh, Shanteri</creator><creator>Xu, Weijun</creator><creator>Helmich, Kate E</creator><creator>Miller, Mitchell D</creator><creator>Cao, Hongnan</creator><creator>Bingman, Craig A</creator><creator>Thorson, Jon S</creator><creator>Phillips, George N</creator><general>American Chemical Society</general><general>American Chemical Society (ACS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OIOZB</scope><scope>OTOTI</scope><scope>5PM</scope></search><sort><creationdate>20150918</creationdate><title>Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases</title><author>Wang, Fengbin ; Singh, Shanteri ; Xu, Weijun ; Helmich, Kate E ; Miller, Mitchell D ; Cao, Hongnan ; Bingman, Craig A ; Thorson, Jon S ; Phillips, George N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a534t-aaa4b7986d9e0eed9ec6fd25e56dba86be3a79b50506fc1db632932e9970c47b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Amines</topic><topic>Amines - chemistry</topic><topic>Amines - metabolism</topic><topic>Amino Acids - chemistry</topic><topic>Amino Acids - metabolism</topic><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Binding Sites</topic><topic>Carbohydrates</topic><topic>Catalytic Domain</topic><topic>Chemical structure</topic><topic>Crystallography, X-Ray</topic><topic>Escherichia coli - chemistry</topic><topic>Escherichia coli - enzymology</topic><topic>Escherichia coli - metabolism</topic><topic>Escherichia coli Proteins - chemistry</topic><topic>Escherichia coli Proteins - metabolism</topic><topic>INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY</topic><topic>Micromonospora - chemistry</topic><topic>Micromonospora - enzymology</topic><topic>Micromonospora - metabolism</topic><topic>Models, Molecular</topic><topic>Monomers</topic><topic>Nucleotides - chemistry</topic><topic>Nucleotides - metabolism</topic><topic>Peptides and proteins</topic><topic>Protein Conformation</topic><topic>Pyridoxal Phosphate - metabolism</topic><topic>Substrate Specificity</topic><topic>Transaminases - chemistry</topic><topic>Transaminases - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Fengbin</creatorcontrib><creatorcontrib>Singh, Shanteri</creatorcontrib><creatorcontrib>Xu, Weijun</creatorcontrib><creatorcontrib>Helmich, Kate E</creatorcontrib><creatorcontrib>Miller, Mitchell D</creatorcontrib><creatorcontrib>Cao, Hongnan</creatorcontrib><creatorcontrib>Bingman, Craig A</creatorcontrib><creatorcontrib>Thorson, Jon S</creatorcontrib><creatorcontrib>Phillips, George N</creatorcontrib><creatorcontrib>Argonne National Laboratory (ANL), Argonne, IL (United States)</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV - Hybrid</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>ACS chemical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Fengbin</au><au>Singh, Shanteri</au><au>Xu, Weijun</au><au>Helmich, Kate E</au><au>Miller, Mitchell D</au><au>Cao, Hongnan</au><au>Bingman, Craig A</au><au>Thorson, Jon S</au><au>Phillips, George N</au><aucorp>Argonne National Laboratory (ANL), Argonne, IL (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases</atitle><jtitle>ACS chemical biology</jtitle><addtitle>ACS Chem. Biol</addtitle><date>2015-09-18</date><risdate>2015</risdate><volume>10</volume><issue>9</issue><spage>2048</spage><epage>2056</epage><pages>2048-2056</pages><issn>1554-8929</issn><eissn>1554-8937</eissn><abstract>Sugar aminotransferases (SATs) are an important class of tailoring enzymes that catalyze the 5′-pyridoxal phosphate (PLP)-dependent stereo- and regiospecific installation of an amino group from an amino acid donor (typically l-Glu or l-Gln) to a corresponding ketosugar nucleotide acceptor. Herein we report the strategic structural study of two homologous C4 SATs (Micromonospora echinospora CalS13 and Escherichia coli WecE) that utilize identical substrates but differ in their stereochemistry of aminotransfer. This study reveals for the first time a new mode of SAT sugar nucleotide binding and, in conjunction with previously reported SAT structural studies, provides the basis from which to propose a universal model for SAT stereo- and regiochemical control of amine installation. Specifically, the universal model put forth highlights catalytic divergence to derive solely from distinctions within nucleotide sugar orientation upon binding within a relatively fixed SAT active site where the available ligand bound structures of the three out of four representative C3 and C4 SAT examples provide a basis for the overall model. Importantly, this study presents a new predictive model to support SAT functional annotation, biochemical study and rational engineering.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>26023720</pmid><doi>10.1021/acschembio.5b00244</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amines Amines - chemistry Amines - metabolism Amino Acids - chemistry Amino Acids - metabolism BASIC BIOLOGICAL SCIENCES Binding Sites Carbohydrates Catalytic Domain Chemical structure Crystallography, X-Ray Escherichia coli - chemistry Escherichia coli - enzymology Escherichia coli - metabolism Escherichia coli Proteins - chemistry Escherichia coli Proteins - metabolism INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY Micromonospora - chemistry Micromonospora - enzymology Micromonospora - metabolism Models, Molecular Monomers Nucleotides - chemistry Nucleotides - metabolism Peptides and proteins Protein Conformation Pyridoxal Phosphate - metabolism Substrate Specificity Transaminases - chemistry Transaminases - metabolism |
title | Structural Basis for the Stereochemical Control of Amine Installation in Nucleotide Sugar Aminotransferases |
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