A gamma variate model that includes stretched exponential is a better fit for gastric emptying data from mice
Noninvasive breath tests for gastric emptying are important techniques for understanding the changes in gastric motility that occur in disease or in response to drugs. Mice are often used as an animal model; however, the gamma variate model currently used for data analysis does not always fit the da...
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Veröffentlicht in: | American journal of physiology: Gastrointestinal and liver physiology 2015-08, Vol.309 (3), p.G162-G170 |
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creator | Bajzer, Željko Gibbons, Simon J Coleman, Heidi D Linden, David R Farrugia, Gianrico |
description | Noninvasive breath tests for gastric emptying are important techniques for understanding the changes in gastric motility that occur in disease or in response to drugs. Mice are often used as an animal model; however, the gamma variate model currently used for data analysis does not always fit the data appropriately. The aim of this study was to determine appropriate mathematical models to better fit mouse gastric emptying data including when two peaks are present in the gastric emptying curve. We fitted 175 gastric emptying data sets with two standard models (gamma variate and power exponential), with a gamma variate model that includes stretched exponential and with a proposed two-component model. The appropriateness of the fit was assessed by the Akaike Information Criterion. We found that extension of the gamma variate model to include a stretched exponential improves the fit, which allows for a better estimation of T1/2 and Tlag. When two distinct peaks in gastric emptying are present, a two-component model is required for the most appropriate fit. We conclude that use of a stretched exponential gamma variate model and when appropriate a two-component model will result in a better estimate of physiologically relevant parameters when analyzing mouse gastric emptying data. |
doi_str_mv | 10.1152/ajpgi.00280.2014 |
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Mice are often used as an animal model; however, the gamma variate model currently used for data analysis does not always fit the data appropriately. The aim of this study was to determine appropriate mathematical models to better fit mouse gastric emptying data including when two peaks are present in the gastric emptying curve. We fitted 175 gastric emptying data sets with two standard models (gamma variate and power exponential), with a gamma variate model that includes stretched exponential and with a proposed two-component model. The appropriateness of the fit was assessed by the Akaike Information Criterion. We found that extension of the gamma variate model to include a stretched exponential improves the fit, which allows for a better estimation of T1/2 and Tlag. When two distinct peaks in gastric emptying are present, a two-component model is required for the most appropriate fit. We conclude that use of a stretched exponential gamma variate model and when appropriate a two-component model will result in a better estimate of physiologically relevant parameters when analyzing mouse gastric emptying data.</description><identifier>ISSN: 0193-1857</identifier><identifier>EISSN: 1522-1547</identifier><identifier>DOI: 10.1152/ajpgi.00280.2014</identifier><identifier>PMID: 26045615</identifier><identifier>CODEN: APGPDF</identifier><language>eng</language><publisher>United States: American Physiological Society</publisher><subject>Animals ; Breath Tests - methods ; Computer Simulation ; Digestive system ; Female ; Gastric Emptying - physiology ; Mathematical models ; Mice ; Models, Animal ; Models, Theoretical ; Motility ; Neurogastroenterology and Motility ; Nonlinear Dynamics ; Rodents ; Stomach - physiology</subject><ispartof>American journal of physiology: Gastrointestinal and liver physiology, 2015-08, Vol.309 (3), p.G162-G170</ispartof><rights>Copyright © 2015 the American Physiological Society.</rights><rights>Copyright American Physiological Society Aug 1, 2015</rights><rights>Copyright © 2015 the American Physiological Society 2015 American Physiological Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c424t-476f1d5fe686b071b03c948b20e18756b8e0d13a5b23087ed041d1c525150ed3</citedby><cites>FETCH-LOGICAL-c424t-476f1d5fe686b071b03c948b20e18756b8e0d13a5b23087ed041d1c525150ed3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,3025,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26045615$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bajzer, Željko</creatorcontrib><creatorcontrib>Gibbons, Simon J</creatorcontrib><creatorcontrib>Coleman, Heidi D</creatorcontrib><creatorcontrib>Linden, David R</creatorcontrib><creatorcontrib>Farrugia, Gianrico</creatorcontrib><title>A gamma variate model that includes stretched exponential is a better fit for gastric emptying data from mice</title><title>American journal of physiology: Gastrointestinal and liver physiology</title><addtitle>Am J Physiol Gastrointest Liver Physiol</addtitle><description>Noninvasive breath tests for gastric emptying are important techniques for understanding the changes in gastric motility that occur in disease or in response to drugs. Mice are often used as an animal model; however, the gamma variate model currently used for data analysis does not always fit the data appropriately. The aim of this study was to determine appropriate mathematical models to better fit mouse gastric emptying data including when two peaks are present in the gastric emptying curve. We fitted 175 gastric emptying data sets with two standard models (gamma variate and power exponential), with a gamma variate model that includes stretched exponential and with a proposed two-component model. The appropriateness of the fit was assessed by the Akaike Information Criterion. We found that extension of the gamma variate model to include a stretched exponential improves the fit, which allows for a better estimation of T1/2 and Tlag. When two distinct peaks in gastric emptying are present, a two-component model is required for the most appropriate fit. We conclude that use of a stretched exponential gamma variate model and when appropriate a two-component model will result in a better estimate of physiologically relevant parameters when analyzing mouse gastric emptying data.</description><subject>Animals</subject><subject>Breath Tests - methods</subject><subject>Computer Simulation</subject><subject>Digestive system</subject><subject>Female</subject><subject>Gastric Emptying - physiology</subject><subject>Mathematical models</subject><subject>Mice</subject><subject>Models, Animal</subject><subject>Models, Theoretical</subject><subject>Motility</subject><subject>Neurogastroenterology and Motility</subject><subject>Nonlinear Dynamics</subject><subject>Rodents</subject><subject>Stomach - physiology</subject><issn>0193-1857</issn><issn>1522-1547</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkc-L1TAQx4so7nP17kkCXrz0OZMm_XERlkVXYcHL3kOaTN_Lo2lqki7uf2-7v1BPAzOf-TDDtyjeI-wRJf-sT_PB7QF4C3sOKF4Uu7XNS5SieVnsALuqxFY2Z8WblE4AIDni6-KM1yBkjXJX-At20N5rdquj05mYD5ZGlo86MzeZcbGUWMqRsjmSZfR7DhNN2emRucQ06ylnimxwmQ0hrq6VdYaRn_Odmw7M6qzZEINn3hl6W7wa9Jjo3WM9L26-fb25_F5e_7z6cXlxXRrBRS5FUw9o5UB1W_fQYA-V6UTbcyBsG1n3LYHFSsueV9A2ZEGgRSO5RAlkq_Piy4N2XnpP1qwHRz2qOTqv450K2ql_J5M7qkO4VWJTQLMKPj0KYvi1UMrKu2RoHPVEYUkKG0DeVY3Y0I__oaewxGn9bqM4Qgddu1LwQJkYUoo0PB-DoLYo1X2U6j5KtUW5rnz4-4nnhafsqj9R85uD</recordid><startdate>20150801</startdate><enddate>20150801</enddate><creator>Bajzer, Željko</creator><creator>Gibbons, Simon J</creator><creator>Coleman, Heidi D</creator><creator>Linden, David R</creator><creator>Farrugia, Gianrico</creator><general>American Physiological Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20150801</creationdate><title>A gamma variate model that includes stretched exponential is a better fit for gastric emptying data from mice</title><author>Bajzer, Željko ; Gibbons, Simon J ; Coleman, Heidi D ; Linden, David R ; Farrugia, Gianrico</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c424t-476f1d5fe686b071b03c948b20e18756b8e0d13a5b23087ed041d1c525150ed3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animals</topic><topic>Breath Tests - methods</topic><topic>Computer Simulation</topic><topic>Digestive system</topic><topic>Female</topic><topic>Gastric Emptying - physiology</topic><topic>Mathematical models</topic><topic>Mice</topic><topic>Models, Animal</topic><topic>Models, Theoretical</topic><topic>Motility</topic><topic>Neurogastroenterology and Motility</topic><topic>Nonlinear Dynamics</topic><topic>Rodents</topic><topic>Stomach - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bajzer, Željko</creatorcontrib><creatorcontrib>Gibbons, Simon J</creatorcontrib><creatorcontrib>Coleman, Heidi D</creatorcontrib><creatorcontrib>Linden, David R</creatorcontrib><creatorcontrib>Farrugia, Gianrico</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>American journal of physiology: Gastrointestinal and liver physiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bajzer, Željko</au><au>Gibbons, Simon J</au><au>Coleman, Heidi D</au><au>Linden, David R</au><au>Farrugia, Gianrico</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A gamma variate model that includes stretched exponential is a better fit for gastric emptying data from mice</atitle><jtitle>American journal of physiology: Gastrointestinal and liver physiology</jtitle><addtitle>Am J Physiol Gastrointest Liver Physiol</addtitle><date>2015-08-01</date><risdate>2015</risdate><volume>309</volume><issue>3</issue><spage>G162</spage><epage>G170</epage><pages>G162-G170</pages><issn>0193-1857</issn><eissn>1522-1547</eissn><coden>APGPDF</coden><abstract>Noninvasive breath tests for gastric emptying are important techniques for understanding the changes in gastric motility that occur in disease or in response to drugs. Mice are often used as an animal model; however, the gamma variate model currently used for data analysis does not always fit the data appropriately. The aim of this study was to determine appropriate mathematical models to better fit mouse gastric emptying data including when two peaks are present in the gastric emptying curve. We fitted 175 gastric emptying data sets with two standard models (gamma variate and power exponential), with a gamma variate model that includes stretched exponential and with a proposed two-component model. The appropriateness of the fit was assessed by the Akaike Information Criterion. We found that extension of the gamma variate model to include a stretched exponential improves the fit, which allows for a better estimation of T1/2 and Tlag. When two distinct peaks in gastric emptying are present, a two-component model is required for the most appropriate fit. We conclude that use of a stretched exponential gamma variate model and when appropriate a two-component model will result in a better estimate of physiologically relevant parameters when analyzing mouse gastric emptying data.</abstract><cop>United States</cop><pub>American Physiological Society</pub><pmid>26045615</pmid><doi>10.1152/ajpgi.00280.2014</doi><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; American Physiological Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
subjects | Animals Breath Tests - methods Computer Simulation Digestive system Female Gastric Emptying - physiology Mathematical models Mice Models, Animal Models, Theoretical Motility Neurogastroenterology and Motility Nonlinear Dynamics Rodents Stomach - physiology |
title | A gamma variate model that includes stretched exponential is a better fit for gastric emptying data from mice |
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