In meso in situ serial X-ray crystallography of soluble and membrane proteins
The lipid cubic phase (LCP) continues to grow in popularity as a medium in which to generate crystals of membrane (and soluble) proteins for high‐resolution X‐ray crystallographic structure determination. To date, the PDB includes 227 records attributed to the LCP or in meso method. Among the listin...
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Veröffentlicht in: | Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 2015-06, Vol.71 (6), p.1238-1256 |
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description | The lipid cubic phase (LCP) continues to grow in popularity as a medium in which to generate crystals of membrane (and soluble) proteins for high‐resolution X‐ray crystallographic structure determination. To date, the PDB includes 227 records attributed to the LCP or in meso method. Among the listings are some of the highest profile membrane proteins, including the β2‐adrenoreceptor–Gs protein complex that figured in the award of the 2012 Nobel Prize in Chemistry to Lefkowitz and Kobilka. The most successful in meso protocol to date uses glass sandwich crystallization plates. Despite their many advantages, glass plates are challenging to harvest crystals from. However, performing in situ X‐ray diffraction measurements with these plates is not practical. Here, an alternative approach is described that provides many of the advantages of glass plates and is compatible with high‐throughput in situ measurements. The novel in meso in situ serial crystallography (IMISX) method introduced here has been demonstrated with AlgE and PepT (alginate and peptide transporters, respectively) as model integral membrane proteins and with lysozyme as a test soluble protein. Structures were solved by molecular replacement and by experimental phasing using bromine SAD and native sulfur SAD methods to resolutions ranging from 1.8 to 2.8 Å using single‐digit microgram quantities of protein. That sulfur SAD phasing worked is testament to the exceptional quality of the IMISX diffraction data. The IMISX method is compatible with readily available, inexpensive materials and equipment, is simple to implement and is compatible with high‐throughput in situ serial data collection at macromolecular crystallography synchrotron beamlines worldwide. Because of its simplicity and effectiveness, the IMISX approach is likely to supplant existing in meso crystallization protocols. It should prove particularly attractive in the area of ligand screening for drug discovery and development. |
doi_str_mv | 10.1107/S1399004715005210 |
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To date, the PDB includes 227 records attributed to the LCP or in meso method. Among the listings are some of the highest profile membrane proteins, including the β2‐adrenoreceptor–Gs protein complex that figured in the award of the 2012 Nobel Prize in Chemistry to Lefkowitz and Kobilka. The most successful in meso protocol to date uses glass sandwich crystallization plates. Despite their many advantages, glass plates are challenging to harvest crystals from. However, performing in situ X‐ray diffraction measurements with these plates is not practical. Here, an alternative approach is described that provides many of the advantages of glass plates and is compatible with high‐throughput in situ measurements. The novel in meso in situ serial crystallography (IMISX) method introduced here has been demonstrated with AlgE and PepT (alginate and peptide transporters, respectively) as model integral membrane proteins and with lysozyme as a test soluble protein. Structures were solved by molecular replacement and by experimental phasing using bromine SAD and native sulfur SAD methods to resolutions ranging from 1.8 to 2.8 Å using single‐digit microgram quantities of protein. That sulfur SAD phasing worked is testament to the exceptional quality of the IMISX diffraction data. The IMISX method is compatible with readily available, inexpensive materials and equipment, is simple to implement and is compatible with high‐throughput in situ serial data collection at macromolecular crystallography synchrotron beamlines worldwide. Because of its simplicity and effectiveness, the IMISX approach is likely to supplant existing in meso crystallization protocols. It should prove particularly attractive in the area of ligand screening for drug discovery and development.</description><identifier>ISSN: 1399-0047</identifier><identifier>ISSN: 0907-4449</identifier><identifier>EISSN: 1399-0047</identifier><identifier>DOI: 10.1107/S1399004715005210</identifier><identifier>PMID: 26057665</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>AlgE ; ALGINATES ; BROMINE ; bromine SAD ; COMPLEXES ; CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY ; CRYSTALLIZATION ; CRYSTALLOGRAPHY ; Crystallography, X-Ray - methods ; experimental phasing ; in meso ; in situ ; INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY ; LIGANDS ; lipid cubic phase ; LIQUID CRYSTALS ; LYSOZYME ; membrane protein ; MEMBRANE PROTEINS ; Membrane Proteins - chemistry ; MEMBRANES ; mesophase ; PepTSt ; PLATES ; Protein Conformation ; Research Papers ; SCREENING ; serial crystallography ; SULFUR ; sulfur SAD ; X-RAY DIFFRACTION</subject><ispartof>Acta crystallographica. Section D, Biological crystallography., 2015-06, Vol.71 (6), p.1238-1256</ispartof><rights>Huang et al. 2015</rights><rights>Huang et al. 2015</rights><rights>Huang et al. 2015 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6098-2767f9a70a23a66d8fdb35e31c3f118ec1ef7ff5a68732f87c6a48c9da61271b3</citedby><cites>FETCH-LOGICAL-c6098-2767f9a70a23a66d8fdb35e31c3f118ec1ef7ff5a68732f87c6a48c9da61271b3</cites><orcidid>0000-0002-0533-7222 ; 0000-0003-3388-997X ; 0000-0002-2931-4551 ; 0000-0001-5360-0905 ; 0000-0002-5340-3036</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1107%2FS1399004715005210$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1107%2FS1399004715005210$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26057665$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/22389068$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Huang, Chia-Ying</creatorcontrib><creatorcontrib>Olieric, Vincent</creatorcontrib><creatorcontrib>Ma, Pikyee</creatorcontrib><creatorcontrib>Panepucci, Ezequiel</creatorcontrib><creatorcontrib>Diederichs, Kay</creatorcontrib><creatorcontrib>Wang, Meitian</creatorcontrib><creatorcontrib>Caffrey, Martin</creatorcontrib><title>In meso in situ serial X-ray crystallography of soluble and membrane proteins</title><title>Acta crystallographica. Section D, Biological crystallography.</title><addtitle>Acta Crystallographica D</addtitle><description>The lipid cubic phase (LCP) continues to grow in popularity as a medium in which to generate crystals of membrane (and soluble) proteins for high‐resolution X‐ray crystallographic structure determination. To date, the PDB includes 227 records attributed to the LCP or in meso method. Among the listings are some of the highest profile membrane proteins, including the β2‐adrenoreceptor–Gs protein complex that figured in the award of the 2012 Nobel Prize in Chemistry to Lefkowitz and Kobilka. The most successful in meso protocol to date uses glass sandwich crystallization plates. Despite their many advantages, glass plates are challenging to harvest crystals from. However, performing in situ X‐ray diffraction measurements with these plates is not practical. Here, an alternative approach is described that provides many of the advantages of glass plates and is compatible with high‐throughput in situ measurements. The novel in meso in situ serial crystallography (IMISX) method introduced here has been demonstrated with AlgE and PepT (alginate and peptide transporters, respectively) as model integral membrane proteins and with lysozyme as a test soluble protein. Structures were solved by molecular replacement and by experimental phasing using bromine SAD and native sulfur SAD methods to resolutions ranging from 1.8 to 2.8 Å using single‐digit microgram quantities of protein. That sulfur SAD phasing worked is testament to the exceptional quality of the IMISX diffraction data. The IMISX method is compatible with readily available, inexpensive materials and equipment, is simple to implement and is compatible with high‐throughput in situ serial data collection at macromolecular crystallography synchrotron beamlines worldwide. Because of its simplicity and effectiveness, the IMISX approach is likely to supplant existing in meso crystallization protocols. It should prove particularly attractive in the area of ligand screening for drug discovery and development.</description><subject>AlgE</subject><subject>ALGINATES</subject><subject>BROMINE</subject><subject>bromine SAD</subject><subject>COMPLEXES</subject><subject>CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY</subject><subject>CRYSTALLIZATION</subject><subject>CRYSTALLOGRAPHY</subject><subject>Crystallography, X-Ray - methods</subject><subject>experimental phasing</subject><subject>in meso</subject><subject>in situ</subject><subject>INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY</subject><subject>LIGANDS</subject><subject>lipid cubic phase</subject><subject>LIQUID CRYSTALS</subject><subject>LYSOZYME</subject><subject>membrane protein</subject><subject>MEMBRANE PROTEINS</subject><subject>Membrane Proteins - chemistry</subject><subject>MEMBRANES</subject><subject>mesophase</subject><subject>PepTSt</subject><subject>PLATES</subject><subject>Protein Conformation</subject><subject>Research Papers</subject><subject>SCREENING</subject><subject>serial crystallography</subject><subject>SULFUR</subject><subject>sulfur SAD</subject><subject>X-RAY DIFFRACTION</subject><issn>1399-0047</issn><issn>0907-4449</issn><issn>1399-0047</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>EIF</sourceid><recordid>eNqFkUtv1DAUhSMEoqXwA9ggS2zYBPyIH9kgVQOUSmWQShFlZTmO3XFx7KmdAPn3eJQyFLFgZev6O8f33lNVTxF8iRDkrz4h0rYQNhxRCClG8F51uCvVu9r9O_eD6lHO1xBCjAl_WB1gBilnjB5WH04DGEyOwAWQ3TiBbJJTHlzWSc1ApzmPyvt4ldR2M4NoQY5-6rwBKvRFOHRJBQO2KY7Ghfy4emCVz-bJ7XlUfX739mL1vj77eHK6Oj6rNYOtqDFn3LaKQ4WJYqwXtu8INQRpYhESRiNjubVUMcEJtoJrphqh214xhDnqyFH1evHdTt1gem3CmJSX2-QGlWYZlZN_vwS3kVfxu2ya4gCbYvB8MYh5dDJrNxq90TEEo0dZliRayEShXtx-k-LNZPIoB5e18b7MHKcsUemPUcSo-GO4R6_jlEJZwo5ibUswIYVCC6VTzDkZu28ZQbmLVP4TadE8uzvrXvE7wwK0C_DDeTP_31Eef32Dz89pSaJo60Xr8mh-7rUqfZOME07ll_WJZKs1Fpd8LS_ILx0auqE</recordid><startdate>201506</startdate><enddate>201506</enddate><creator>Huang, Chia-Ying</creator><creator>Olieric, Vincent</creator><creator>Ma, Pikyee</creator><creator>Panepucci, Ezequiel</creator><creator>Diederichs, Kay</creator><creator>Wang, Meitian</creator><creator>Caffrey, Martin</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>24P</scope><scope>WIN</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7SP</scope><scope>7SR</scope><scope>7TK</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>H8D</scope><scope>JG9</scope><scope>L7M</scope><scope>7X8</scope><scope>OTOTI</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-0533-7222</orcidid><orcidid>https://orcid.org/0000-0003-3388-997X</orcidid><orcidid>https://orcid.org/0000-0002-2931-4551</orcidid><orcidid>https://orcid.org/0000-0001-5360-0905</orcidid><orcidid>https://orcid.org/0000-0002-5340-3036</orcidid></search><sort><creationdate>201506</creationdate><title>In meso in situ serial X-ray crystallography of soluble and membrane proteins</title><author>Huang, Chia-Ying ; Olieric, Vincent ; Ma, Pikyee ; Panepucci, Ezequiel ; Diederichs, Kay ; Wang, Meitian ; Caffrey, Martin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6098-2767f9a70a23a66d8fdb35e31c3f118ec1ef7ff5a68732f87c6a48c9da61271b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>AlgE</topic><topic>ALGINATES</topic><topic>BROMINE</topic><topic>bromine SAD</topic><topic>COMPLEXES</topic><topic>CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY</topic><topic>CRYSTALLIZATION</topic><topic>CRYSTALLOGRAPHY</topic><topic>Crystallography, X-Ray - methods</topic><topic>experimental phasing</topic><topic>in meso</topic><topic>in situ</topic><topic>INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY</topic><topic>LIGANDS</topic><topic>lipid cubic phase</topic><topic>LIQUID CRYSTALS</topic><topic>LYSOZYME</topic><topic>membrane protein</topic><topic>MEMBRANE PROTEINS</topic><topic>Membrane Proteins - chemistry</topic><topic>MEMBRANES</topic><topic>mesophase</topic><topic>PepTSt</topic><topic>PLATES</topic><topic>Protein Conformation</topic><topic>Research Papers</topic><topic>SCREENING</topic><topic>serial crystallography</topic><topic>SULFUR</topic><topic>sulfur SAD</topic><topic>X-RAY DIFFRACTION</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huang, Chia-Ying</creatorcontrib><creatorcontrib>Olieric, Vincent</creatorcontrib><creatorcontrib>Ma, Pikyee</creatorcontrib><creatorcontrib>Panepucci, Ezequiel</creatorcontrib><creatorcontrib>Diederichs, Kay</creatorcontrib><creatorcontrib>Wang, Meitian</creatorcontrib><creatorcontrib>Caffrey, Martin</creatorcontrib><collection>Istex</collection><collection>Wiley-Blackwell Open Access Titles</collection><collection>Wiley Free Content</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. Section D, Biological crystallography.</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Huang, Chia-Ying</au><au>Olieric, Vincent</au><au>Ma, Pikyee</au><au>Panepucci, Ezequiel</au><au>Diederichs, Kay</au><au>Wang, Meitian</au><au>Caffrey, Martin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>In meso in situ serial X-ray crystallography of soluble and membrane proteins</atitle><jtitle>Acta crystallographica. Section D, Biological crystallography.</jtitle><addtitle>Acta Crystallographica D</addtitle><date>2015-06</date><risdate>2015</risdate><volume>71</volume><issue>6</issue><spage>1238</spage><epage>1256</epage><pages>1238-1256</pages><issn>1399-0047</issn><issn>0907-4449</issn><eissn>1399-0047</eissn><abstract>The lipid cubic phase (LCP) continues to grow in popularity as a medium in which to generate crystals of membrane (and soluble) proteins for high‐resolution X‐ray crystallographic structure determination. To date, the PDB includes 227 records attributed to the LCP or in meso method. Among the listings are some of the highest profile membrane proteins, including the β2‐adrenoreceptor–Gs protein complex that figured in the award of the 2012 Nobel Prize in Chemistry to Lefkowitz and Kobilka. The most successful in meso protocol to date uses glass sandwich crystallization plates. Despite their many advantages, glass plates are challenging to harvest crystals from. However, performing in situ X‐ray diffraction measurements with these plates is not practical. Here, an alternative approach is described that provides many of the advantages of glass plates and is compatible with high‐throughput in situ measurements. The novel in meso in situ serial crystallography (IMISX) method introduced here has been demonstrated with AlgE and PepT (alginate and peptide transporters, respectively) as model integral membrane proteins and with lysozyme as a test soluble protein. Structures were solved by molecular replacement and by experimental phasing using bromine SAD and native sulfur SAD methods to resolutions ranging from 1.8 to 2.8 Å using single‐digit microgram quantities of protein. That sulfur SAD phasing worked is testament to the exceptional quality of the IMISX diffraction data. The IMISX method is compatible with readily available, inexpensive materials and equipment, is simple to implement and is compatible with high‐throughput in situ serial data collection at macromolecular crystallography synchrotron beamlines worldwide. Because of its simplicity and effectiveness, the IMISX approach is likely to supplant existing in meso crystallization protocols. It should prove particularly attractive in the area of ligand screening for drug discovery and development.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>26057665</pmid><doi>10.1107/S1399004715005210</doi><tpages>19</tpages><orcidid>https://orcid.org/0000-0002-0533-7222</orcidid><orcidid>https://orcid.org/0000-0003-3388-997X</orcidid><orcidid>https://orcid.org/0000-0002-2931-4551</orcidid><orcidid>https://orcid.org/0000-0001-5360-0905</orcidid><orcidid>https://orcid.org/0000-0002-5340-3036</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | AlgE ALGINATES BROMINE bromine SAD COMPLEXES CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY CRYSTALLIZATION CRYSTALLOGRAPHY Crystallography, X-Ray - methods experimental phasing in meso in situ INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY LIGANDS lipid cubic phase LIQUID CRYSTALS LYSOZYME membrane protein MEMBRANE PROTEINS Membrane Proteins - chemistry MEMBRANES mesophase PepTSt PLATES Protein Conformation Research Papers SCREENING serial crystallography SULFUR sulfur SAD X-RAY DIFFRACTION |
title | In meso in situ serial X-ray crystallography of soluble and membrane proteins |
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