Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum
Unlike many other photosynthetic dinoflagellates, whose plastids contain a characteristic carotenoid peridinin, members of the genus Lepidodinium are the only known dinoflagellate species possessing green alga-derived plastids. However, the precise origin of Lepidodinium plastids has hitherto remain...
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| Veröffentlicht in: | Genome biology and evolution 2015-04, Vol.7 (4), p.1133-1140 |
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| creator | Kamikawa, Ryoma Tanifuji, Goro Kawachi, Masanobu Miyashita, Hideaki Hashimoto, Tetsuo Inagaki, Yuji |
| description | Unlike many other photosynthetic dinoflagellates, whose plastids contain a characteristic carotenoid peridinin, members of the genus Lepidodinium are the only known dinoflagellate species possessing green alga-derived plastids. However, the precise origin of Lepidodinium plastids has hitherto remained uncertain. In this study, we completely sequenced the plastid genome of Lepidodinium chlorophorum NIES-1868. Our phylogenetic analyses of 52 plastid-encoded proteins unite L. chlorophorum exclusively with a pedinophyte, Pedinomonas minor, indicating that the green-colored plastids in Lepidodinium spp. were derived from an endosymbiotic pedinophyte or a green alga closely related to pedinophytes. Our genome comparison incorporating the origin of the Lepidodinium plastids strongly suggests that the endosymbiont plastid genome acquired by the ancestral Lepidodinium species has lost genes encoding proteins involved in metabolism and biosynthesis, protein/metabolite transport, and plastid division during the endosymbiosis. We further discuss the commonalities and idiosyncrasies in genome evolution between the L. chlorophorum plastid and other plastids acquired through endosymbiosis of eukaryotic photoautotrophs. |
| doi_str_mv | 10.1093/gbe/evv060 |
| format | Article |
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We further discuss the commonalities and idiosyncrasies in genome evolution between the L. chlorophorum plastid and other plastids acquired through endosymbiosis of eukaryotic photoautotrophs.</description><identifier>ISSN: 1759-6653</identifier><identifier>EISSN: 1759-6653</identifier><identifier>DOI: 10.1093/gbe/evv060</identifier><identifier>PMID: 25840416</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Chlorophyll ; Dinoflagellida - classification ; Dinoflagellida - genetics ; Evolution, Molecular ; Genes ; Genome, Plastid ; Genomes ; Microorganisms ; Molecular Sequence Data ; Phylogeny ; Plastids ; Plastids - genetics</subject><ispartof>Genome biology and evolution, 2015-04, Vol.7 (4), p.1133-1140</ispartof><rights>The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.</rights><rights>The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>The Author(s) 2015. 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We further discuss the commonalities and idiosyncrasies in genome evolution between the L. chlorophorum plastid and other plastids acquired through endosymbiosis of eukaryotic photoautotrophs.</description><subject>Chlorophyll</subject><subject>Dinoflagellida - classification</subject><subject>Dinoflagellida - genetics</subject><subject>Evolution, Molecular</subject><subject>Genes</subject><subject>Genome, Plastid</subject><subject>Genomes</subject><subject>Microorganisms</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Plastids</subject><subject>Plastids - genetics</subject><issn>1759-6653</issn><issn>1759-6653</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkU9r3DAQxUVIadK0l3yAYsglFNxIlixbl0AI_QcL7aE9C1se2Qq2xpXshT3mm1fb3YakJ2ne_OYxwyPkktGPjCp-07dwA9stlfSEnLOqVLmUJT999j8jb2J8oFRKIflrclaUtaCCyXPy-GNs4uK6rAePE-RtE6HL5mE3YlJ22ez8jM4vSVwGyDC43vkM7d-qDwA-Nzhi2A8dnVJ_3-ycRzs2PYxjs0C2gdl1mES3TpkZ0gjOA4Z1ekte2WaM8O74XpBfnz_9vP-ab75_-XZ_t8lNKdSSS0OlKYxoeV2k1U3HJBW1sqlmVtWSA6cmXVcbA4rZsrPAoVVFySwTraD8gtwefOe1naAz4JfQjHoObmrCTmPj9MuOd4PucauFYKqmMhlcHw0C_l4hLnpy0ezP84Br1ExWQtaKVUVCr_5DH3ANPp2XqLqSZSHKKlEfDpQJGGMA-7QMo3qfrE7J6kOyCX7_fP0n9F-U_A9HXqND</recordid><startdate>20150401</startdate><enddate>20150401</enddate><creator>Kamikawa, Ryoma</creator><creator>Tanifuji, Goro</creator><creator>Kawachi, Masanobu</creator><creator>Miyashita, Hideaki</creator><creator>Hashimoto, Tetsuo</creator><creator>Inagaki, Yuji</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20150401</creationdate><title>Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum</title><author>Kamikawa, Ryoma ; Tanifuji, Goro ; Kawachi, Masanobu ; Miyashita, Hideaki ; Hashimoto, Tetsuo ; Inagaki, Yuji</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c549t-6c06c2c4b382041cd160489fb381f9863e30c4638cce91f5dfe3eb9251f14b403</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Chlorophyll</topic><topic>Dinoflagellida - classification</topic><topic>Dinoflagellida - genetics</topic><topic>Evolution, Molecular</topic><topic>Genes</topic><topic>Genome, Plastid</topic><topic>Genomes</topic><topic>Microorganisms</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Plastids</topic><topic>Plastids - genetics</topic><toplevel>online_resources</toplevel><creatorcontrib>Kamikawa, Ryoma</creatorcontrib><creatorcontrib>Tanifuji, Goro</creatorcontrib><creatorcontrib>Kawachi, Masanobu</creatorcontrib><creatorcontrib>Miyashita, Hideaki</creatorcontrib><creatorcontrib>Hashimoto, Tetsuo</creatorcontrib><creatorcontrib>Inagaki, Yuji</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genome biology and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kamikawa, Ryoma</au><au>Tanifuji, Goro</au><au>Kawachi, Masanobu</au><au>Miyashita, Hideaki</au><au>Hashimoto, Tetsuo</au><au>Inagaki, Yuji</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum</atitle><jtitle>Genome biology and evolution</jtitle><addtitle>Genome Biol Evol</addtitle><date>2015-04-01</date><risdate>2015</risdate><volume>7</volume><issue>4</issue><spage>1133</spage><epage>1140</epage><pages>1133-1140</pages><issn>1759-6653</issn><eissn>1759-6653</eissn><abstract>Unlike many other photosynthetic dinoflagellates, whose plastids contain a characteristic carotenoid peridinin, members of the genus Lepidodinium are the only known dinoflagellate species possessing green alga-derived plastids. 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| subjects | Chlorophyll Dinoflagellida - classification Dinoflagellida - genetics Evolution, Molecular Genes Genome, Plastid Genomes Microorganisms Molecular Sequence Data Phylogeny Plastids Plastids - genetics |
| title | Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum |
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