GSDS 2.0: an upgraded gene feature visualization server
: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 wi...
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| Veröffentlicht in: | Bioinformatics 2015-04, Vol.31 (8), p.1296-1297 |
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| container_title | Bioinformatics |
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| creator | Hu, Bo Jin, Jinpu Guo, An-Yuan Zhang, He Luo, Jingchu Gao, Ge |
| description | : Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.
Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.
gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn
Supplementary data are available at Bioinformatics online. |
| doi_str_mv | 10.1093/bioinformatics/btu817 |
| format | Article |
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Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.
gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn
Supplementary data are available at Bioinformatics online.</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1367-4811</identifier><identifier>EISSN: 1460-2059</identifier><identifier>DOI: 10.1093/bioinformatics/btu817</identifier><identifier>PMID: 25504850</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Applications Notes ; Bioinformatics ; Biologists ; Editing ; Evolutionary ; Format ; Genes ; Genes - genetics ; Genomics - methods ; Humans ; Internet ; Molecular Sequence Annotation - methods ; Phylogeny ; Servers ; Software ; Source code ; User-Computer Interface</subject><ispartof>Bioinformatics, 2015-04, Vol.31 (8), p.1296-1297</ispartof><rights>The Author 2014. Published by Oxford University Press.</rights><rights>The Author 2014. Published by Oxford University Press. 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c543t-69786ec5c3dcf95f05f3092351262c19c6779b75798ace646331d11bbe35842f3</citedby><cites>FETCH-LOGICAL-c543t-69786ec5c3dcf95f05f3092351262c19c6779b75798ace646331d11bbe35842f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393523/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393523/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25504850$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hu, Bo</creatorcontrib><creatorcontrib>Jin, Jinpu</creatorcontrib><creatorcontrib>Guo, An-Yuan</creatorcontrib><creatorcontrib>Zhang, He</creatorcontrib><creatorcontrib>Luo, Jingchu</creatorcontrib><creatorcontrib>Gao, Ge</creatorcontrib><title>GSDS 2.0: an upgraded gene feature visualization server</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.
Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.
gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn
Supplementary data are available at Bioinformatics online.</description><subject>Applications Notes</subject><subject>Bioinformatics</subject><subject>Biologists</subject><subject>Editing</subject><subject>Evolutionary</subject><subject>Format</subject><subject>Genes</subject><subject>Genes - genetics</subject><subject>Genomics - methods</subject><subject>Humans</subject><subject>Internet</subject><subject>Molecular Sequence Annotation - methods</subject><subject>Phylogeny</subject><subject>Servers</subject><subject>Software</subject><subject>Source code</subject><subject>User-Computer Interface</subject><issn>1367-4803</issn><issn>1367-4811</issn><issn>1460-2059</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1Lw0AQhhdRrFZ_gpKjl7T7kf3yIEjVKhQ8VM_LZjOpK2lSd5OC_npbWos96VxmYN55ZoYXoQuCBwRrNsx94-uyCXPbeheHedspIg_QCWFCppki5HBXY9ZDpzG-Y4w55uIY9SjnOFMcnyA5nt5NEzrA14mtk24xC7aAIplBDUkJtu0CJEsfO1v5r9Wmpk4ihCWEM3RU2irC-Tb30evD_cvoMZ08j59Gt5PU8Yy1qdBSCXDcscKVmpeYlwxryjihgjqinZBS55JLrawDkQnGSEFIngPjKqMl66ObDXfR5XMoHNRtsJVZBD-34dM01pv9Tu3fzKxZmoxpxilbAa62gNB8dBBbM_fRQVXZGpouGiKxloJTJf8jJZnkStK_pUKuievoI76RutDEGKDcHU-wWVtp9q00GytXc5e_P99N_XjHvgEZ7p4g</recordid><startdate>20150415</startdate><enddate>20150415</enddate><creator>Hu, Bo</creator><creator>Jin, Jinpu</creator><creator>Guo, An-Yuan</creator><creator>Zhang, He</creator><creator>Luo, Jingchu</creator><creator>Gao, Ge</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QO</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7SC</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>5PM</scope></search><sort><creationdate>20150415</creationdate><title>GSDS 2.0: an upgraded gene feature visualization server</title><author>Hu, Bo ; Jin, Jinpu ; Guo, An-Yuan ; Zhang, He ; Luo, Jingchu ; Gao, Ge</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c543t-69786ec5c3dcf95f05f3092351262c19c6779b75798ace646331d11bbe35842f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Applications Notes</topic><topic>Bioinformatics</topic><topic>Biologists</topic><topic>Editing</topic><topic>Evolutionary</topic><topic>Format</topic><topic>Genes</topic><topic>Genes - genetics</topic><topic>Genomics - methods</topic><topic>Humans</topic><topic>Internet</topic><topic>Molecular Sequence Annotation - methods</topic><topic>Phylogeny</topic><topic>Servers</topic><topic>Software</topic><topic>Source code</topic><topic>User-Computer Interface</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hu, Bo</creatorcontrib><creatorcontrib>Jin, Jinpu</creatorcontrib><creatorcontrib>Guo, An-Yuan</creatorcontrib><creatorcontrib>Zhang, He</creatorcontrib><creatorcontrib>Luo, Jingchu</creatorcontrib><creatorcontrib>Gao, Ge</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hu, Bo</au><au>Jin, Jinpu</au><au>Guo, An-Yuan</au><au>Zhang, He</au><au>Luo, Jingchu</au><au>Gao, Ge</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>GSDS 2.0: an upgraded gene feature visualization server</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2015-04-15</date><risdate>2015</risdate><volume>31</volume><issue>8</issue><spage>1296</spage><epage>1297</epage><pages>1296-1297</pages><issn>1367-4803</issn><eissn>1367-4811</eissn><eissn>1460-2059</eissn><abstract>: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display Server (GSDS) has been widely used by more than 60 000 users since its first publication in 2007. Here, we reported the upgraded GSDS 2.0 with a newly designed interface, supports for more types of annotation features and formats, as well as an integrated visual editor for editing the generated figure. Moreover, a user-specified phylogenetic tree can be added to facilitate further evolutionary analysis. The full source code is also available for downloading.
Web server and source code are freely available at http://gsds.cbi.pku.edu.cn.
gaog@mail.cbi.pku.edu.cn or gsds@mail.cbi.pku.edu.cn
Supplementary data are available at Bioinformatics online.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>25504850</pmid><doi>10.1093/bioinformatics/btu817</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 1367-4803 |
| ispartof | Bioinformatics, 2015-04, Vol.31 (8), p.1296-1297 |
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| source | Oxford Journals Open Access Collection; MEDLINE; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Applications Notes Bioinformatics Biologists Editing Evolutionary Format Genes Genes - genetics Genomics - methods Humans Internet Molecular Sequence Annotation - methods Phylogeny Servers Software Source code User-Computer Interface |
| title | GSDS 2.0: an upgraded gene feature visualization server |
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