Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma
Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-te...
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creator | Awadalla, Mona S Fingert, John H Roos, Benjamin E Chen, Simon Holmes, Richard Graham, Stuart L Chehade, Mark Galanopolous, Anna Ridge, Bronwyn Souzeau, Emmanuelle Zhou, Tiger Siggs, Owen M Hewitt, Alex W Mackey, David A Burdon, Kathryn P Craig, Jamie E |
description | Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma. |
doi_str_mv | 10.1016/j.ajo.2014.09.044 |
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Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.</description><identifier>ISSN: 0002-9394</identifier><identifier>EISSN: 1879-1891</identifier><identifier>DOI: 10.1016/j.ajo.2014.09.044</identifier><identifier>PMID: 25284765</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Adult ; Aged ; Australia ; Case-Control Studies ; Comparative Genomic Hybridization ; DNA Copy Number Variations - genetics ; Female ; Glaucoma, Open-Angle - genetics ; Humans ; Male ; Middle Aged ; Mutation ; Ophthalmology ; Pedigree ; Protein-Serine-Threonine Kinases - genetics ; Real-Time Polymerase Chain Reaction ; Retrospective Studies</subject><ispartof>American journal of ophthalmology, 2015-01, Vol.159 (1), p.124-130.e1</ispartof><rights>Elsevier Inc.</rights><rights>2015 Elsevier Inc.</rights><rights>Copyright © 2015 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c506t-87acd53dc494e3a9185eff479abba7efa157b3e97c27a5da2998e27ac7da57093</citedby><cites>FETCH-LOGICAL-c506t-87acd53dc494e3a9185eff479abba7efa157b3e97c27a5da2998e27ac7da57093</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ajo.2014.09.044$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25284765$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Awadalla, Mona S</creatorcontrib><creatorcontrib>Fingert, John H</creatorcontrib><creatorcontrib>Roos, Benjamin E</creatorcontrib><creatorcontrib>Chen, Simon</creatorcontrib><creatorcontrib>Holmes, Richard</creatorcontrib><creatorcontrib>Graham, Stuart L</creatorcontrib><creatorcontrib>Chehade, Mark</creatorcontrib><creatorcontrib>Galanopolous, Anna</creatorcontrib><creatorcontrib>Ridge, Bronwyn</creatorcontrib><creatorcontrib>Souzeau, Emmanuelle</creatorcontrib><creatorcontrib>Zhou, Tiger</creatorcontrib><creatorcontrib>Siggs, Owen M</creatorcontrib><creatorcontrib>Hewitt, Alex W</creatorcontrib><creatorcontrib>Mackey, David A</creatorcontrib><creatorcontrib>Burdon, Kathryn P</creatorcontrib><creatorcontrib>Craig, Jamie E</creatorcontrib><title>Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma</title><title>American journal of ophthalmology</title><addtitle>Am J Ophthalmol</addtitle><description>Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.</description><subject>Adult</subject><subject>Aged</subject><subject>Australia</subject><subject>Case-Control Studies</subject><subject>Comparative Genomic Hybridization</subject><subject>DNA Copy Number Variations - genetics</subject><subject>Female</subject><subject>Glaucoma, Open-Angle - genetics</subject><subject>Humans</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Mutation</subject><subject>Ophthalmology</subject><subject>Pedigree</subject><subject>Protein-Serine-Threonine Kinases - genetics</subject><subject>Real-Time Polymerase Chain Reaction</subject><subject>Retrospective Studies</subject><issn>0002-9394</issn><issn>1879-1891</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UsFu1DAQjRCIbgsfwAX5yCXBTuw4FlKlZQUFUdFKlHK0Js6kdcjai51U2r-voy0VcOBkW_PmzfN7k2WvGC0YZfXboYDBFyVlvKCqoJw_yVaskSpnjWJPsxWltMxVpfhRdhzjkJ615PJ5dlSKsuGyFqvseuN3e_J13rYYyDUEC5P1LhLfk6v3XxixjqznOAUYLThymaropkh-2OmWXAa7hbAnFzt0-drdjEjORpiN38KL7FkPY8SXD-dJ9v3jh6vNp_z84uzzZn2eG0HrKW8kmE5UneGKYwWKNQL7nksFbQsSe2BCthUqaUoJooNSqQbT1cgOhKSqOslOD7y7ud1iZ5K4JFXvDsq0B6v_rjh7q2_8neaVEJzSRPDmgSD4XzPGSW9tNDiO4NDPUbO6EpQ2lC2z2AFqgo8xYP84hlG95KEHnfLQSx6aKp3ySD2v_9T32PE7gAR4dwBgcunOYtDRJIsNdjagmXTn7X_pT__pNqN11sD4E_cYBz8Hl-zXTMdSU_1tWYhlH1j6el1xUd0DHtyxNw</recordid><startdate>20150101</startdate><enddate>20150101</enddate><creator>Awadalla, Mona S</creator><creator>Fingert, John H</creator><creator>Roos, Benjamin E</creator><creator>Chen, Simon</creator><creator>Holmes, Richard</creator><creator>Graham, Stuart L</creator><creator>Chehade, Mark</creator><creator>Galanopolous, Anna</creator><creator>Ridge, Bronwyn</creator><creator>Souzeau, Emmanuelle</creator><creator>Zhou, Tiger</creator><creator>Siggs, Owen M</creator><creator>Hewitt, Alex W</creator><creator>Mackey, David A</creator><creator>Burdon, Kathryn P</creator><creator>Craig, Jamie E</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20150101</creationdate><title>Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma</title><author>Awadalla, Mona S ; Fingert, John H ; Roos, Benjamin E ; Chen, Simon ; Holmes, Richard ; Graham, Stuart L ; Chehade, Mark ; Galanopolous, Anna ; Ridge, Bronwyn ; Souzeau, Emmanuelle ; Zhou, Tiger ; Siggs, Owen M ; Hewitt, Alex W ; Mackey, David A ; Burdon, Kathryn P ; Craig, Jamie E</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c506t-87acd53dc494e3a9185eff479abba7efa157b3e97c27a5da2998e27ac7da57093</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Australia</topic><topic>Case-Control Studies</topic><topic>Comparative Genomic Hybridization</topic><topic>DNA Copy Number Variations - genetics</topic><topic>Female</topic><topic>Glaucoma, Open-Angle - genetics</topic><topic>Humans</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Mutation</topic><topic>Ophthalmology</topic><topic>Pedigree</topic><topic>Protein-Serine-Threonine Kinases - genetics</topic><topic>Real-Time Polymerase Chain Reaction</topic><topic>Retrospective Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Awadalla, Mona S</creatorcontrib><creatorcontrib>Fingert, John H</creatorcontrib><creatorcontrib>Roos, Benjamin E</creatorcontrib><creatorcontrib>Chen, Simon</creatorcontrib><creatorcontrib>Holmes, Richard</creatorcontrib><creatorcontrib>Graham, Stuart L</creatorcontrib><creatorcontrib>Chehade, Mark</creatorcontrib><creatorcontrib>Galanopolous, Anna</creatorcontrib><creatorcontrib>Ridge, Bronwyn</creatorcontrib><creatorcontrib>Souzeau, Emmanuelle</creatorcontrib><creatorcontrib>Zhou, Tiger</creatorcontrib><creatorcontrib>Siggs, Owen M</creatorcontrib><creatorcontrib>Hewitt, Alex W</creatorcontrib><creatorcontrib>Mackey, David A</creatorcontrib><creatorcontrib>Burdon, Kathryn P</creatorcontrib><creatorcontrib>Craig, Jamie E</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>American journal of ophthalmology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Awadalla, Mona S</au><au>Fingert, John H</au><au>Roos, Benjamin E</au><au>Chen, Simon</au><au>Holmes, Richard</au><au>Graham, Stuart L</au><au>Chehade, Mark</au><au>Galanopolous, Anna</au><au>Ridge, Bronwyn</au><au>Souzeau, Emmanuelle</au><au>Zhou, Tiger</au><au>Siggs, Owen M</au><au>Hewitt, Alex W</au><au>Mackey, David A</au><au>Burdon, Kathryn P</au><au>Craig, Jamie E</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma</atitle><jtitle>American journal of ophthalmology</jtitle><addtitle>Am J Ophthalmol</addtitle><date>2015-01-01</date><risdate>2015</risdate><volume>159</volume><issue>1</issue><spage>124</spage><epage>130.e1</epage><pages>124-130.e1</pages><issn>0002-9394</issn><eissn>1879-1891</eissn><abstract>Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>25284765</pmid><doi>10.1016/j.ajo.2014.09.044</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adult Aged Australia Case-Control Studies Comparative Genomic Hybridization DNA Copy Number Variations - genetics Female Glaucoma, Open-Angle - genetics Humans Male Middle Aged Mutation Ophthalmology Pedigree Protein-Serine-Threonine Kinases - genetics Real-Time Polymerase Chain Reaction Retrospective Studies |
title | Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma |
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