Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma

Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-te...

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Veröffentlicht in:American journal of ophthalmology 2015-01, Vol.159 (1), p.124-130.e1
Hauptverfasser: Awadalla, Mona S, Fingert, John H, Roos, Benjamin E, Chen, Simon, Holmes, Richard, Graham, Stuart L, Chehade, Mark, Galanopolous, Anna, Ridge, Bronwyn, Souzeau, Emmanuelle, Zhou, Tiger, Siggs, Owen M, Hewitt, Alex W, Mackey, David A, Burdon, Kathryn P, Craig, Jamie E
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container_end_page 130.e1
container_issue 1
container_start_page 124
container_title American journal of ophthalmology
container_volume 159
creator Awadalla, Mona S
Fingert, John H
Roos, Benjamin E
Chen, Simon
Holmes, Richard
Graham, Stuart L
Chehade, Mark
Galanopolous, Anna
Ridge, Bronwyn
Souzeau, Emmanuelle
Zhou, Tiger
Siggs, Owen M
Hewitt, Alex W
Mackey, David A
Burdon, Kathryn P
Craig, Jamie E
description Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.
doi_str_mv 10.1016/j.ajo.2014.09.044
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Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.</description><identifier>ISSN: 0002-9394</identifier><identifier>EISSN: 1879-1891</identifier><identifier>DOI: 10.1016/j.ajo.2014.09.044</identifier><identifier>PMID: 25284765</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Adult ; Aged ; Australia ; Case-Control Studies ; Comparative Genomic Hybridization ; DNA Copy Number Variations - genetics ; Female ; Glaucoma, Open-Angle - genetics ; Humans ; Male ; Middle Aged ; Mutation ; Ophthalmology ; Pedigree ; Protein-Serine-Threonine Kinases - genetics ; Real-Time Polymerase Chain Reaction ; Retrospective Studies</subject><ispartof>American journal of ophthalmology, 2015-01, Vol.159 (1), p.124-130.e1</ispartof><rights>Elsevier Inc.</rights><rights>2015 Elsevier Inc.</rights><rights>Copyright © 2015 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c506t-87acd53dc494e3a9185eff479abba7efa157b3e97c27a5da2998e27ac7da57093</citedby><cites>FETCH-LOGICAL-c506t-87acd53dc494e3a9185eff479abba7efa157b3e97c27a5da2998e27ac7da57093</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ajo.2014.09.044$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25284765$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Awadalla, Mona S</creatorcontrib><creatorcontrib>Fingert, John H</creatorcontrib><creatorcontrib>Roos, Benjamin E</creatorcontrib><creatorcontrib>Chen, Simon</creatorcontrib><creatorcontrib>Holmes, Richard</creatorcontrib><creatorcontrib>Graham, Stuart L</creatorcontrib><creatorcontrib>Chehade, Mark</creatorcontrib><creatorcontrib>Galanopolous, Anna</creatorcontrib><creatorcontrib>Ridge, Bronwyn</creatorcontrib><creatorcontrib>Souzeau, Emmanuelle</creatorcontrib><creatorcontrib>Zhou, Tiger</creatorcontrib><creatorcontrib>Siggs, Owen M</creatorcontrib><creatorcontrib>Hewitt, Alex W</creatorcontrib><creatorcontrib>Mackey, David A</creatorcontrib><creatorcontrib>Burdon, Kathryn P</creatorcontrib><creatorcontrib>Craig, Jamie E</creatorcontrib><title>Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma</title><title>American journal of ophthalmology</title><addtitle>Am J Ophthalmol</addtitle><description>Purpose To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. Design A retrospective cohort study. Methods DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. Results Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). 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No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. Conclusion We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>25284765</pmid><doi>10.1016/j.ajo.2014.09.044</doi><oa>free_for_read</oa></addata></record>
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subjects Adult
Aged
Australia
Case-Control Studies
Comparative Genomic Hybridization
DNA Copy Number Variations - genetics
Female
Glaucoma, Open-Angle - genetics
Humans
Male
Middle Aged
Mutation
Ophthalmology
Pedigree
Protein-Serine-Threonine Kinases - genetics
Real-Time Polymerase Chain Reaction
Retrospective Studies
title Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma
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