SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis
The SU（VAR）3-9-1ike histone methyltransferases usually catalyze repressive histone H3K9 methylation and are involved in transcriptional gene silencing in eukaryotic organisms. We identified a putative SU（VAR）3-9-1ike histone methyltransferase SUVR2 by a forward genetic screen and demonstrated that i...
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| Veröffentlicht in: | Cell research 2014-12, Vol.24 (12), p.1445-1465 |
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| creator | Han, Yong-Feng Dou, Kun Ma, Ze-Yang Zhang, Su-Wei Huang, Huan-Wei Li, Lin Cai, Tao Chen, She Zhu, Jian-Kang He, Xin-Jian |
| description | The SU（VAR）3-9-1ike histone methyltransferases usually catalyze repressive histone H3K9 methylation and are involved in transcriptional gene silencing in eukaryotic organisms. We identified a putative SU（VAR）3-9-1ike histone methyltransferase SUVR2 by a forward genetic screen and demonstrated that it is involved in transcriptional gene silencing at genomic loci targeted by RNA-directed DNA methylation （RdDM）. We found that SUVR2 has no histone methyltransferase activity and the conserved catalytic sites of SUVR2 are dispensable for the function of SUVR2 in transcriptional silencing. SUVR2 forms a complex with its close homolog SUVRI and associate with three previously uncharacterized SNF2-related chromatin-remodeling proteins CHR19, CHR27, and CHR28. SUVR2 was previously thought to be a component in the RdDM pathway. We demonstrated that SUVR2 contributes to transcriptional gene silencing not only at a subset of RdDM target loci but also at many RdDM-independent target loci. Our study sug- gests that the involvement of SUVR2 in transcriptional gene silencing is related to nueleosome positioning mediated by its associated chromatin-remodeling proteins. |
| doi_str_mv | 10.1038/cr.2014.156 |
| format | Article |
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We identified a putative SU（VAR）3-9-1ike histone methyltransferase SUVR2 by a forward genetic screen and demonstrated that it is involved in transcriptional gene silencing at genomic loci targeted by RNA-directed DNA methylation （RdDM）. We found that SUVR2 has no histone methyltransferase activity and the conserved catalytic sites of SUVR2 are dispensable for the function of SUVR2 in transcriptional silencing. SUVR2 forms a complex with its close homolog SUVRI and associate with three previously uncharacterized SNF2-related chromatin-remodeling proteins CHR19, CHR27, and CHR28. SUVR2 was previously thought to be a component in the RdDM pathway. We demonstrated that SUVR2 contributes to transcriptional gene silencing not only at a subset of RdDM target loci but also at many RdDM-independent target loci. Our study sug- gests that the involvement of SUVR2 in transcriptional gene silencing is related to nueleosome positioning mediated by its associated chromatin-remodeling proteins.</description><identifier>ISSN: 1001-0602</identifier><identifier>EISSN: 1748-7838</identifier><identifier>DOI: 10.1038/cr.2014.156</identifier><identifier>PMID: 25420628</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/337/176/1988 ; 631/337/176/2016 ; Arabidopsis ; Arabidopsis - genetics ; Arabidopsis - metabolism ; Arabidopsis Proteins - metabolism ; Biomedical and Life Sciences ; Cell Biology ; Deoxyribonucleic acid ; DNA ; DNA Methylation ; DNA甲基化 ; Gene Expression Regulation, Plant ; Gene Silencing ; Genetic Loci ; Histones - metabolism ; Life Sciences ; Original ; original-article ; Proteins ; Transcriptional Activation ; VAR ; 基因座 ; 拟南芥 ; 染色质重塑 ; 真核生物 ; 组蛋白 ; 转录后基因沉默</subject><ispartof>Cell research, 2014-12, Vol.24 (12), p.1445-1465</ispartof><rights>The Author(s) 2014</rights><rights>Copyright Nature Publishing Group Dec 2014</rights><rights>Copyright © 2014 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences 2014 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c576t-410f2f33eb6e1bc5693c4fca42b62e3ec6194fcc20a98b1013e3467714873deb3</citedby><cites>FETCH-LOGICAL-c576t-410f2f33eb6e1bc5693c4fca42b62e3ec6194fcc20a98b1013e3467714873deb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/85240X/85240X.jpg</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260354/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260354/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,41464,42533,51294,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25420628$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Han, Yong-Feng</creatorcontrib><creatorcontrib>Dou, Kun</creatorcontrib><creatorcontrib>Ma, Ze-Yang</creatorcontrib><creatorcontrib>Zhang, Su-Wei</creatorcontrib><creatorcontrib>Huang, Huan-Wei</creatorcontrib><creatorcontrib>Li, Lin</creatorcontrib><creatorcontrib>Cai, Tao</creatorcontrib><creatorcontrib>Chen, She</creatorcontrib><creatorcontrib>Zhu, Jian-Kang</creatorcontrib><creatorcontrib>He, Xin-Jian</creatorcontrib><title>SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis</title><title>Cell research</title><addtitle>Cell Res</addtitle><addtitle>Cell Research</addtitle><description>The SU（VAR）3-9-1ike histone methyltransferases usually catalyze repressive histone H3K9 methylation and are involved in transcriptional gene silencing in eukaryotic organisms. We identified a putative SU（VAR）3-9-1ike histone methyltransferase SUVR2 by a forward genetic screen and demonstrated that it is involved in transcriptional gene silencing at genomic loci targeted by RNA-directed DNA methylation （RdDM）. We found that SUVR2 has no histone methyltransferase activity and the conserved catalytic sites of SUVR2 are dispensable for the function of SUVR2 in transcriptional silencing. SUVR2 forms a complex with its close homolog SUVRI and associate with three previously uncharacterized SNF2-related chromatin-remodeling proteins CHR19, CHR27, and CHR28. SUVR2 was previously thought to be a component in the RdDM pathway. We demonstrated that SUVR2 contributes to transcriptional gene silencing not only at a subset of RdDM target loci but also at many RdDM-independent target loci. Our study sug- gests that the involvement of SUVR2 in transcriptional gene silencing is related to nueleosome positioning mediated by its associated chromatin-remodeling proteins.</description><subject>631/337/176/1988</subject><subject>631/337/176/2016</subject><subject>Arabidopsis</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>Arabidopsis Proteins - metabolism</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Methylation</subject><subject>DNA甲基化</subject><subject>Gene Expression Regulation, Plant</subject><subject>Gene Silencing</subject><subject>Genetic Loci</subject><subject>Histones - metabolism</subject><subject>Life Sciences</subject><subject>Original</subject><subject>original-article</subject><subject>Proteins</subject><subject>Transcriptional Activation</subject><subject>VAR</subject><subject>基因座</subject><subject>拟南芥</subject><subject>染色质重塑</subject><subject>真核生物</subject><subject>组蛋白</subject><subject>转录后基因沉默</subject><issn>1001-0602</issn><issn>1748-7838</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkk1v1DAQhiMEoqVw4o4suCBBFn_Fdi5IVUUBqQKJUq6W40yyrhI7tbOLeuSf47DLqiAkTjP2PH5fjz1F8ZTgFcFMvbFxRTHhK1KJe8UxkVyVUjF1P-cYkxILTI-KRyldY0wrXpGHxVGOFAuqjosfl1ffvlDkEnJ-G4YttDlBczQ-2eim2QVvBtSDB5TcAN4636PmFpmUgnVmXpbf3bxGl5_OaRlhMHOWsOsYxqWYd8bQwrBgUwwzOL84odNoGteGKbn0uHjQmSHBk308Ka7O3309-1BefH7_8ez0orSVFHPJCe5oxxg0AkhjK1EzyztrOG0EBQZWkDqvLcWmVg3BhAHjQkrClWQtNOykeLvTnTbNCK0Fn7sc9BTdaOKtDsbpPyverXUftppTgVnFs8DLvUAMNxtIsx5dsjAMxkPYJE1EJgmusvX_UVpXqmKCZvTFX-h12MT86L8opaSs8eL9akfZGFKK0B3uTbBepkDbqJcp0HkKMv3sbqsH9ve3Z-D1Dki55HuId0z_qfd8774Ovr_JJw6SQjDKeC05-wlsFsjM</recordid><startdate>20141201</startdate><enddate>20141201</enddate><creator>Han, Yong-Feng</creator><creator>Dou, Kun</creator><creator>Ma, Ze-Yang</creator><creator>Zhang, Su-Wei</creator><creator>Huang, Huan-Wei</creator><creator>Li, Lin</creator><creator>Cai, Tao</creator><creator>Chen, She</creator><creator>Zhu, Jian-Kang</creator><creator>He, Xin-Jian</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>WU4</scope><scope>~WA</scope><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20141201</creationdate><title>SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis</title><author>Han, Yong-Feng ; Dou, Kun ; Ma, Ze-Yang ; Zhang, Su-Wei ; Huang, Huan-Wei ; Li, Lin ; Cai, Tao ; Chen, She ; Zhu, Jian-Kang ; He, Xin-Jian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c576t-410f2f33eb6e1bc5693c4fca42b62e3ec6194fcc20a98b1013e3467714873deb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>631/337/176/1988</topic><topic>631/337/176/2016</topic><topic>Arabidopsis</topic><topic>Arabidopsis - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Cell research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Han, Yong-Feng</au><au>Dou, Kun</au><au>Ma, Ze-Yang</au><au>Zhang, Su-Wei</au><au>Huang, Huan-Wei</au><au>Li, Lin</au><au>Cai, Tao</au><au>Chen, She</au><au>Zhu, Jian-Kang</au><au>He, Xin-Jian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis</atitle><jtitle>Cell research</jtitle><stitle>Cell Res</stitle><addtitle>Cell Research</addtitle><date>2014-12-01</date><risdate>2014</risdate><volume>24</volume><issue>12</issue><spage>1445</spage><epage>1465</epage><pages>1445-1465</pages><issn>1001-0602</issn><eissn>1748-7838</eissn><abstract>The SU（VAR）3-9-1ike histone methyltransferases usually catalyze repressive histone H3K9 methylation and are involved in transcriptional gene silencing in eukaryotic organisms. We identified a putative SU（VAR）3-9-1ike histone methyltransferase SUVR2 by a forward genetic screen and demonstrated that it is involved in transcriptional gene silencing at genomic loci targeted by RNA-directed DNA methylation （RdDM）. We found that SUVR2 has no histone methyltransferase activity and the conserved catalytic sites of SUVR2 are dispensable for the function of SUVR2 in transcriptional silencing. SUVR2 forms a complex with its close homolog SUVRI and associate with three previously uncharacterized SNF2-related chromatin-remodeling proteins CHR19, CHR27, and CHR28. SUVR2 was previously thought to be a component in the RdDM pathway. We demonstrated that SUVR2 contributes to transcriptional gene silencing not only at a subset of RdDM target loci but also at many RdDM-independent target loci. Our study sug- gests that the involvement of SUVR2 in transcriptional gene silencing is related to nueleosome positioning mediated by its associated chromatin-remodeling proteins.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>25420628</pmid><doi>10.1038/cr.2014.156</doi><tpages>21</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | 631/337/176/1988 631/337/176/2016 Arabidopsis Arabidopsis - genetics Arabidopsis - metabolism Arabidopsis Proteins - metabolism Biomedical and Life Sciences Cell Biology Deoxyribonucleic acid DNA DNA Methylation DNA甲基化 Gene Expression Regulation, Plant Gene Silencing Genetic Loci Histones - metabolism Life Sciences Original original-article Proteins Transcriptional Activation VAR 基因座 拟南芥 染色质重塑 真核生物 组蛋白 转录后基因沉默 |
| title | SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis |
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