Analysing Branching Pattern in Plantations of Young Red Oak Trees (Quercus rubra L., Fagaceae)
Branching patterns of the growth units of monocyclic or bicyclic annual shoots on the main axis of 5‐year‐old red oaks were studied in a plantation in south‐western France. For each growth unit, the production of axillary structures associated with each node was described in the form of a sequence....
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| Veröffentlicht in: | Annals of botany 2003-03, Vol.91 (4), p.479-492 |
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| creator | HEURET, PATRICK GUÉDON, YANN GUÉRARD, NATACHA BARTHÉLÉMY, DANIEL |
| description | Branching patterns of the growth units of monocyclic or bicyclic annual shoots on the main axis of 5‐year‐old red oaks were studied in a plantation in south‐western France. For each growth unit, the production of axillary structures associated with each node was described in the form of a sequence. For a given category of growth units, homogeneous zones (i.e. zones in which composition in terms of type of axillary production does not change substantially) were identified on such sequences using a dedicated statistical model called a hidden semi‐Markov chain. For instance, on the first growth unit of bicyclic annual shoots, a zone with 1‐year‐delayed branches was found systematically below a zone with buds and one‐cycle‐delayed branches. Branching patterns shown by the growth unit of monocyclic annual shoots and on the second growth unit of bicyclic annual shoots were very similar. Branches with a 1‐year delay in development tended to be polycyclic at the top of the growth unit and monocyclic lower down. The number of nodes shown by the branched zone of the growth unit of monocyclic annual shoots was stable, irrespective of the total number of nodes of the growth unit. In contrast, the second growth unit of bicyclic annual shoots exhibited a correlation between the number of nodes in the branching zone and the total number of nodes. The contribution made by this method to understanding plant functioning is discussed. |
| doi_str_mv | 10.1093/aob/mcg046 |
| format | Article |
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For each growth unit, the production of axillary structures associated with each node was described in the form of a sequence. For a given category of growth units, homogeneous zones (i.e. zones in which composition in terms of type of axillary production does not change substantially) were identified on such sequences using a dedicated statistical model called a hidden semi‐Markov chain. For instance, on the first growth unit of bicyclic annual shoots, a zone with 1‐year‐delayed branches was found systematically below a zone with buds and one‐cycle‐delayed branches. Branching patterns shown by the growth unit of monocyclic annual shoots and on the second growth unit of bicyclic annual shoots were very similar. Branches with a 1‐year delay in development tended to be polycyclic at the top of the growth unit and monocyclic lower down. The number of nodes shown by the branched zone of the growth unit of monocyclic annual shoots was stable, irrespective of the total number of nodes of the growth unit. In contrast, the second growth unit of bicyclic annual shoots exhibited a correlation between the number of nodes in the branching zone and the total number of nodes. The contribution made by this method to understanding plant functioning is discussed.</description><identifier>ISSN: 0305-7364</identifier><identifier>EISSN: 1095-8290</identifier><identifier>DOI: 10.1093/aob/mcg046</identifier><identifier>PMID: 12588728</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Algorithms ; Architecture ; Branches ; Branching ; Computer Science ; hidden semi‐Markov chain ; Internodes ; Key words: Branching sequences ; Leaves ; Markov Chains ; Modeling and Simulation ; Models, Biological ; morphology ; Original ; Parametric models ; Plant growth ; Plant Shoots - growth & development ; polycyclism ; Quercus - growth & development ; Quercus rubra ; Scars ; Tree growth</subject><ispartof>Annals of botany, 2003-03, Vol.91 (4), p.479-492</ispartof><rights>2003 Annals of Botany Company</rights><rights>Copyright Oxford University Press(England) Mar 2003</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><rights>2003</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c495t-fcb16d363087b23f01b53d1815a6ef6f3141c0b37e7089bbab5072c59ca1692e3</citedby><orcidid>0000-0003-3187-2517 ; 0000-0002-7956-0451</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/42795619$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/42795619$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,727,780,784,803,885,27924,27925,53791,53793,58017,58250</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12588728$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://inria.hal.science/hal-00826990$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>HEURET, PATRICK</creatorcontrib><creatorcontrib>GUÉDON, YANN</creatorcontrib><creatorcontrib>GUÉRARD, NATACHA</creatorcontrib><creatorcontrib>BARTHÉLÉMY, DANIEL</creatorcontrib><title>Analysing Branching Pattern in Plantations of Young Red Oak Trees (Quercus rubra L., Fagaceae)</title><title>Annals of botany</title><addtitle>Ann Bot</addtitle><description>Branching patterns of the growth units of monocyclic or bicyclic annual shoots on the main axis of 5‐year‐old red oaks were studied in a plantation in south‐western France. For each growth unit, the production of axillary structures associated with each node was described in the form of a sequence. For a given category of growth units, homogeneous zones (i.e. zones in which composition in terms of type of axillary production does not change substantially) were identified on such sequences using a dedicated statistical model called a hidden semi‐Markov chain. For instance, on the first growth unit of bicyclic annual shoots, a zone with 1‐year‐delayed branches was found systematically below a zone with buds and one‐cycle‐delayed branches. Branching patterns shown by the growth unit of monocyclic annual shoots and on the second growth unit of bicyclic annual shoots were very similar. Branches with a 1‐year delay in development tended to be polycyclic at the top of the growth unit and monocyclic lower down. The number of nodes shown by the branched zone of the growth unit of monocyclic annual shoots was stable, irrespective of the total number of nodes of the growth unit. In contrast, the second growth unit of bicyclic annual shoots exhibited a correlation between the number of nodes in the branching zone and the total number of nodes. The contribution made by this method to understanding plant functioning is discussed.</description><subject>Algorithms</subject><subject>Architecture</subject><subject>Branches</subject><subject>Branching</subject><subject>Computer Science</subject><subject>hidden semi‐Markov chain</subject><subject>Internodes</subject><subject>Key words: Branching sequences</subject><subject>Leaves</subject><subject>Markov Chains</subject><subject>Modeling and Simulation</subject><subject>Models, Biological</subject><subject>morphology</subject><subject>Original</subject><subject>Parametric models</subject><subject>Plant growth</subject><subject>Plant Shoots - growth & development</subject><subject>polycyclism</subject><subject>Quercus - growth & development</subject><subject>Quercus rubra</subject><subject>Scars</subject><subject>Tree growth</subject><issn>0305-7364</issn><issn>1095-8290</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkcFv0zAUxiMEYmVw4Q6yOCCGyPZsx459QeoGpaCibWhIsAOW7TptujTe7GRi_z2uUhXYydb7fn7v-fuy7DmGQwySHmlvjtZ2AQV_kI1SheWCSHiYjYACy0vKi73sSYwrACBc4sfZHiZMiJKIUfZr3OrmLtbtAh0H3drl5namu86FFtUtOmt02-mu9m1EvkI_fZ_0b26OTvUVugjORfTmvHfB9hGF3gSNZofv0EQvtHXaHTzNHlW6ie7Z9tzPvk8-XpxM89npp88n41luC8m6vLIG8znlFERpCK0AG0bnWGCmuat4RXGBLRhauhKENEYbBiWxTFqNuSSO7mfvh77XvVm7uXVtF3SjrkO91uFOeV2r_5W2XqqFv1UFKTBwkRocDA2W955NxzO1qQGIZJ6EW5zY19thwd_0LnZqXUfrmmSV831UJQUiBS8T-OoeuPJ9SIZHhSWDggqABL0dIBt8jMFVu_EY1CZflfJVQ74JfvnvP_-i20AT8GIAVrHzYacXpJSMY5n0fNDr2LnfO12HK5UWLpma_rhU8GX2YXJ5_lVh-gcTYLjC</recordid><startdate>20030301</startdate><enddate>20030301</enddate><creator>HEURET, PATRICK</creator><creator>GUÉDON, YANN</creator><creator>GUÉRARD, NATACHA</creator><creator>BARTHÉLÉMY, DANIEL</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><general>Oxford University Press (OUP)</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>7T7</scope><scope>7TM</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-3187-2517</orcidid><orcidid>https://orcid.org/0000-0002-7956-0451</orcidid></search><sort><creationdate>20030301</creationdate><title>Analysing Branching Pattern in Plantations of Young Red Oak Trees (Quercus rubra L., Fagaceae)</title><author>HEURET, PATRICK ; 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For each growth unit, the production of axillary structures associated with each node was described in the form of a sequence. For a given category of growth units, homogeneous zones (i.e. zones in which composition in terms of type of axillary production does not change substantially) were identified on such sequences using a dedicated statistical model called a hidden semi‐Markov chain. For instance, on the first growth unit of bicyclic annual shoots, a zone with 1‐year‐delayed branches was found systematically below a zone with buds and one‐cycle‐delayed branches. Branching patterns shown by the growth unit of monocyclic annual shoots and on the second growth unit of bicyclic annual shoots were very similar. Branches with a 1‐year delay in development tended to be polycyclic at the top of the growth unit and monocyclic lower down. The number of nodes shown by the branched zone of the growth unit of monocyclic annual shoots was stable, irrespective of the total number of nodes of the growth unit. In contrast, the second growth unit of bicyclic annual shoots exhibited a correlation between the number of nodes in the branching zone and the total number of nodes. The contribution made by this method to understanding plant functioning is discussed.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>12588728</pmid><doi>10.1093/aob/mcg046</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0003-3187-2517</orcidid><orcidid>https://orcid.org/0000-0002-7956-0451</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Annals of botany, 2003-03, Vol.91 (4), p.479-492 |
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| source | MEDLINE; JSTOR Archive Collection A-Z Listing; Oxford University Press Journals All Titles (1996-Current); EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Algorithms Architecture Branches Branching Computer Science hidden semi‐Markov chain Internodes Key words: Branching sequences Leaves Markov Chains Modeling and Simulation Models, Biological morphology Original Parametric models Plant growth Plant Shoots - growth & development polycyclism Quercus - growth & development Quercus rubra Scars Tree growth |
| title | Analysing Branching Pattern in Plantations of Young Red Oak Trees (Quercus rubra L., Fagaceae) |
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