Wnt signaling pathway pharmacogenetics in non-small cell lung cancer

Wingless-type protein (Wnt)/β-catenin pathway alterations in non-small cell lung cancer (NSCLC) are associated with poor prognosis and resistance. In 598 stage III–IV NSCLC patients receiving platinum-based chemotherapy at the MD Anderson Cancer Center (MDACC), we correlated survival with 441 host s...

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Veröffentlicht in:The pharmacogenomics journal 2014-12, Vol.14 (6), p.509-522
Hauptverfasser: Stewart, D J, Chang, D W, Ye, Y, Spitz, M, Lu, C, Shu, X, Wampfler, J A, Marks, R S, Garces, Y I, Yang, P, Wu, X
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container_end_page 522
container_issue 6
container_start_page 509
container_title The pharmacogenomics journal
container_volume 14
creator Stewart, D J
Chang, D W
Ye, Y
Spitz, M
Lu, C
Shu, X
Wampfler, J A
Marks, R S
Garces, Y I
Yang, P
Wu, X
description Wingless-type protein (Wnt)/β-catenin pathway alterations in non-small cell lung cancer (NSCLC) are associated with poor prognosis and resistance. In 598 stage III–IV NSCLC patients receiving platinum-based chemotherapy at the MD Anderson Cancer Center (MDACC), we correlated survival with 441 host single-nucleotide polymorphisms (SNPs) in 50 Wnt pathway genes. We then assessed the most significant SNPs in 240 Mayo Clinic patients receiving platinum-based chemotherapy for advanced NSCLC, 127 MDACC patients receiving platinum-based adjuvant chemotherapy and 340 early stage MDACC patients undergoing surgery alone (cohorts 2–4). In multivariate analysis, survival correlates with SNPs for AXIN2 (rs11868547 and rs4541111, of which rs11868547 was assessed in cohorts 2–4), Wnt-5B (rs12819505), CXXC4 (rs4413407) and WIF-1 (rs10878232). Median survival was 19.7, 15.6 and 10.7 months for patients with 1, 2 and 3–5 unfavorable genotypes, respectively ( P =3.8 × 10 −9 ). Survival tree analysis classified patients into two groups (median survival time 11.3 vs 17.3 months, P =4.7 × 10 −8 ). None of the SNPs achieved significance in cohorts 2–4; however, there was a trend in the same direction as cohort 1 for 3 of the SNPs. Using online databases, we found rs10878232 displayed expression quantitative trait loci correlation with the expression of LEMD3, a neighboring gene previously associated with NSCLC survival. In conclusion, results from cohort 1 provide further evidence for an important role for Wnt in NSCLC. Investigation of Wnt inhibitors in advanced NSCLC would be reasonable. Lack of an SNP association with outcome in cohorts 2–4 could be due to low statistical power, impact of patient heterogeneity or false-positive observations in cohort 1.
doi_str_mv 10.1038/tpj.2014.21
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subjects 45
45/43
692/499
Adult
Aged
Aged, 80 and over
Biomedical and Life Sciences
Biomedicine
Cancer
Carcinoma, Non-Small-Cell Lung - diagnosis
Carcinoma, Non-Small-Cell Lung - drug therapy
Carcinoma, Non-Small-Cell Lung - genetics
Carcinoma, Non-Small-Cell Lung - metabolism
Chemotherapy
Cohort Studies
Drug metabolism
Female
Gene Expression
Genetic aspects
Human Genetics
Humans
Identification and classification
Lung cancer
Lung cancer, Non-small cell
Lung Neoplasms - diagnosis
Lung Neoplasms - drug therapy
Lung Neoplasms - genetics
Lung Neoplasms - metabolism
Male
Medical prognosis
Middle Aged
Multivariate Analysis
Non-small cell lung carcinoma
Oncology
original-article
Patient outcomes
Patients
Pharmacogenetics
Pharmacotherapy
Platinum
Psychopharmacology
Quantitative trait loci
Signal transduction
Single nucleotide polymorphisms
Single-nucleotide polymorphism
Small cell lung carcinoma
Wnt protein
Wnt Proteins - antagonists & inhibitors
Wnt Proteins - metabolism
Wnt Signaling Pathway - drug effects
Wnt Signaling Pathway - genetics
β-Catenin
title Wnt signaling pathway pharmacogenetics in non-small cell lung cancer
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