Cloning, expression, purification, crystallization and preliminary X-ray characterization of allantoinase from Bacillus licheniformis ATCC 14580

Allantoinase, a member of the amidohydrolase superfamily, exists in a wide variety of organisms, including bacteria, fungi, plants and a few animals, such as fishes and amphibians. Allantoinase catalyzes the reversible hydrolysis of allantoin into allantoate by hydrolytic cleavage of the N1—C2 amide...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Acta crystallographica. Section F, Structural biology communications Structural biology communications, 2014-11, Vol.70 (11), p.1513-1516
Hauptverfasser: Conejero-Muriel, Mayte, Martínez-Gómez, Ana Isabel, Martínez-Rodríguez, Sergio, Gavira, Jose A.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1516
container_issue 11
container_start_page 1513
container_title Acta crystallographica. Section F, Structural biology communications
container_volume 70
creator Conejero-Muriel, Mayte
Martínez-Gómez, Ana Isabel
Martínez-Rodríguez, Sergio
Gavira, Jose A.
description Allantoinase, a member of the amidohydrolase superfamily, exists in a wide variety of organisms, including bacteria, fungi, plants and a few animals, such as fishes and amphibians. Allantoinase catalyzes the reversible hydrolysis of allantoin into allantoate by hydrolytic cleavage of the N1—C2 amide bond of the five‐membered hydantoin ring. Allantoinase from Bacillus licheniformis (AllBali) presents an inverted enantioselectivity towards allantoin (R‐enantioselective), which is a distinguishable feature that is not observed for other allantoinases. In this work, B. licheniformis ATCC 14580 allantoinase (AllBali) containing a C‐terminal His6 tag was overproduced in Escherichia coli and purified to homogeneity. Crystals of AllBali were obtained by the vapour‐diffusion method using 0.1 M potassium thiocyanate, 20%(w/v) polyethylene glycol 3350 as a crystallization solution. X‐ray diffraction data were collected to a resolution of 3.5 Å with an Rmerge of 29.2% from a crystal belonging to space group P1211, with unit‐cell parameters a = 54.93, b = 164.74, c = 106.89 Å, β = 98.49°. There are four molecules in the asymmetric unit with a solvent content of 47% as estimated from the Matthews coefficient (VM = 2.34 Å3 Da−1).
doi_str_mv 10.1107/S2053230X14021608
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4231854</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3482886021</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4721-1b1bcbc833d121b261a423befe9e8fcdef25c95e6edf7898743bf86a3430ad603</originalsourceid><addsrcrecordid>eNqFkc1u1DAUhSMEolXpA7BBltiwaMA_-d0gTSNakEqrqkUzrCzHue64OPbUTqDDU_DIOJ12VGDByvb1d459dJLkJcFvCcHluwuKc0YZXpAMU1Lg6kmyO43Safb00X4n2Q_hGmM8yUhZP092aM5KWpF6N_nVGGe1vTpAcLvyEIJ29gCtRq-VlmK4O0m_DoMwRv-8GyBhOxRZo3tthV-jRerFGsml8EIO4B8wp1AUCTu4iAVAyrseHQqpjRkDMlouwWrlfK8Dml02DSJZXuEXyTMlTID9-3Uv-XL04bL5mJ6cHX9qZiepzEpKUtKSVrayYqwjlLS0ICKjrAUFNVRKdqBoLuscCuhUWdVVmbFWVYVgGcOiKzDbS95vfFdj20MnwQ5eGL7yuo-ZuBOa_3lj9ZJfue88PkOqPIsGb-4NvLsZIQw8BpEwJQY3Bk4KGiuoClZG9PVf6LUbvY3xJgpnNcaMRIpsKOldCB7U9jME86k7_k_lUfPqcYqt4qHgCNQb4Ic2sP6_I599PaKHZznJpg-lG60OA9xutcJ_40XJypzPT4_56fzz-cX5Ys4b9huU18lp</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1620490031</pqid></control><display><type>article</type><title>Cloning, expression, purification, crystallization and preliminary X-ray characterization of allantoinase from Bacillus licheniformis ATCC 14580</title><source>MEDLINE</source><source>Wiley Journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Conejero-Muriel, Mayte ; Martínez-Gómez, Ana Isabel ; Martínez-Rodríguez, Sergio ; Gavira, Jose A.</creator><creatorcontrib>Conejero-Muriel, Mayte ; Martínez-Gómez, Ana Isabel ; Martínez-Rodríguez, Sergio ; Gavira, Jose A.</creatorcontrib><description>Allantoinase, a member of the amidohydrolase superfamily, exists in a wide variety of organisms, including bacteria, fungi, plants and a few animals, such as fishes and amphibians. Allantoinase catalyzes the reversible hydrolysis of allantoin into allantoate by hydrolytic cleavage of the N1—C2 amide bond of the five‐membered hydantoin ring. Allantoinase from Bacillus licheniformis (AllBali) presents an inverted enantioselectivity towards allantoin (R‐enantioselective), which is a distinguishable feature that is not observed for other allantoinases. In this work, B. licheniformis ATCC 14580 allantoinase (AllBali) containing a C‐terminal His6 tag was overproduced in Escherichia coli and purified to homogeneity. Crystals of AllBali were obtained by the vapour‐diffusion method using 0.1 M potassium thiocyanate, 20%(w/v) polyethylene glycol 3350 as a crystallization solution. X‐ray diffraction data were collected to a resolution of 3.5 Å with an Rmerge of 29.2% from a crystal belonging to space group P1211, with unit‐cell parameters a = 54.93, b = 164.74, c = 106.89 Å, β = 98.49°. There are four molecules in the asymmetric unit with a solvent content of 47% as estimated from the Matthews coefficient (VM = 2.34 Å3 Da−1).</description><identifier>ISSN: 2053-230X</identifier><identifier>EISSN: 2053-230X</identifier><identifier>DOI: 10.1107/S2053230X14021608</identifier><identifier>PMID: 25372819</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>allantoin ; allantoinase ; amidohydrolase ; Amidohydrolases - biosynthesis ; Amidohydrolases - chemistry ; Amidohydrolases - isolation &amp; purification ; Bacillus - enzymology ; Bacillus licheniformis ; Cloning, Molecular - methods ; Crystallization Communications ; Gene Expression Regulation, Bacterial ; X-Ray Diffraction</subject><ispartof>Acta crystallographica. Section F, Structural biology communications, 2014-11, Vol.70 (11), p.1513-1516</ispartof><rights>International Union of Crystallography, 2014</rights><rights>International Union of Crystallography 2014 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4721-1b1bcbc833d121b261a423befe9e8fcdef25c95e6edf7898743bf86a3430ad603</citedby><cites>FETCH-LOGICAL-c4721-1b1bcbc833d121b261a423befe9e8fcdef25c95e6edf7898743bf86a3430ad603</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231854/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231854/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,1417,27924,27925,45574,45575,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25372819$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Conejero-Muriel, Mayte</creatorcontrib><creatorcontrib>Martínez-Gómez, Ana Isabel</creatorcontrib><creatorcontrib>Martínez-Rodríguez, Sergio</creatorcontrib><creatorcontrib>Gavira, Jose A.</creatorcontrib><title>Cloning, expression, purification, crystallization and preliminary X-ray characterization of allantoinase from Bacillus licheniformis ATCC 14580</title><title>Acta crystallographica. Section F, Structural biology communications</title><addtitle>Acta Crystallographica Section F</addtitle><description>Allantoinase, a member of the amidohydrolase superfamily, exists in a wide variety of organisms, including bacteria, fungi, plants and a few animals, such as fishes and amphibians. Allantoinase catalyzes the reversible hydrolysis of allantoin into allantoate by hydrolytic cleavage of the N1—C2 amide bond of the five‐membered hydantoin ring. Allantoinase from Bacillus licheniformis (AllBali) presents an inverted enantioselectivity towards allantoin (R‐enantioselective), which is a distinguishable feature that is not observed for other allantoinases. In this work, B. licheniformis ATCC 14580 allantoinase (AllBali) containing a C‐terminal His6 tag was overproduced in Escherichia coli and purified to homogeneity. Crystals of AllBali were obtained by the vapour‐diffusion method using 0.1 M potassium thiocyanate, 20%(w/v) polyethylene glycol 3350 as a crystallization solution. X‐ray diffraction data were collected to a resolution of 3.5 Å with an Rmerge of 29.2% from a crystal belonging to space group P1211, with unit‐cell parameters a = 54.93, b = 164.74, c = 106.89 Å, β = 98.49°. There are four molecules in the asymmetric unit with a solvent content of 47% as estimated from the Matthews coefficient (VM = 2.34 Å3 Da−1).</description><subject>allantoin</subject><subject>allantoinase</subject><subject>amidohydrolase</subject><subject>Amidohydrolases - biosynthesis</subject><subject>Amidohydrolases - chemistry</subject><subject>Amidohydrolases - isolation &amp; purification</subject><subject>Bacillus - enzymology</subject><subject>Bacillus licheniformis</subject><subject>Cloning, Molecular - methods</subject><subject>Crystallization Communications</subject><subject>Gene Expression Regulation, Bacterial</subject><subject>X-Ray Diffraction</subject><issn>2053-230X</issn><issn>2053-230X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1u1DAUhSMEolXpA7BBltiwaMA_-d0gTSNakEqrqkUzrCzHue64OPbUTqDDU_DIOJ12VGDByvb1d459dJLkJcFvCcHluwuKc0YZXpAMU1Lg6kmyO43Safb00X4n2Q_hGmM8yUhZP092aM5KWpF6N_nVGGe1vTpAcLvyEIJ29gCtRq-VlmK4O0m_DoMwRv-8GyBhOxRZo3tthV-jRerFGsml8EIO4B8wp1AUCTu4iAVAyrseHQqpjRkDMlouwWrlfK8Dml02DSJZXuEXyTMlTID9-3Uv-XL04bL5mJ6cHX9qZiepzEpKUtKSVrayYqwjlLS0ICKjrAUFNVRKdqBoLuscCuhUWdVVmbFWVYVgGcOiKzDbS95vfFdj20MnwQ5eGL7yuo-ZuBOa_3lj9ZJfue88PkOqPIsGb-4NvLsZIQw8BpEwJQY3Bk4KGiuoClZG9PVf6LUbvY3xJgpnNcaMRIpsKOldCB7U9jME86k7_k_lUfPqcYqt4qHgCNQb4Ic2sP6_I599PaKHZznJpg-lG60OA9xutcJ_40XJypzPT4_56fzz-cX5Ys4b9huU18lp</recordid><startdate>201411</startdate><enddate>201411</enddate><creator>Conejero-Muriel, Mayte</creator><creator>Martínez-Gómez, Ana Isabel</creator><creator>Martínez-Rodríguez, Sergio</creator><creator>Gavira, Jose A.</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201411</creationdate><title>Cloning, expression, purification, crystallization and preliminary X-ray characterization of allantoinase from Bacillus licheniformis ATCC 14580</title><author>Conejero-Muriel, Mayte ; Martínez-Gómez, Ana Isabel ; Martínez-Rodríguez, Sergio ; Gavira, Jose A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4721-1b1bcbc833d121b261a423befe9e8fcdef25c95e6edf7898743bf86a3430ad603</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>allantoin</topic><topic>allantoinase</topic><topic>amidohydrolase</topic><topic>Amidohydrolases - biosynthesis</topic><topic>Amidohydrolases - chemistry</topic><topic>Amidohydrolases - isolation &amp; purification</topic><topic>Bacillus - enzymology</topic><topic>Bacillus licheniformis</topic><topic>Cloning, Molecular - methods</topic><topic>Crystallization Communications</topic><topic>Gene Expression Regulation, Bacterial</topic><topic>X-Ray Diffraction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Conejero-Muriel, Mayte</creatorcontrib><creatorcontrib>Martínez-Gómez, Ana Isabel</creatorcontrib><creatorcontrib>Martínez-Rodríguez, Sergio</creatorcontrib><creatorcontrib>Gavira, Jose A.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. Section F, Structural biology communications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Conejero-Muriel, Mayte</au><au>Martínez-Gómez, Ana Isabel</au><au>Martínez-Rodríguez, Sergio</au><au>Gavira, Jose A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Cloning, expression, purification, crystallization and preliminary X-ray characterization of allantoinase from Bacillus licheniformis ATCC 14580</atitle><jtitle>Acta crystallographica. Section F, Structural biology communications</jtitle><addtitle>Acta Crystallographica Section F</addtitle><date>2014-11</date><risdate>2014</risdate><volume>70</volume><issue>11</issue><spage>1513</spage><epage>1516</epage><pages>1513-1516</pages><issn>2053-230X</issn><eissn>2053-230X</eissn><abstract>Allantoinase, a member of the amidohydrolase superfamily, exists in a wide variety of organisms, including bacteria, fungi, plants and a few animals, such as fishes and amphibians. Allantoinase catalyzes the reversible hydrolysis of allantoin into allantoate by hydrolytic cleavage of the N1—C2 amide bond of the five‐membered hydantoin ring. Allantoinase from Bacillus licheniformis (AllBali) presents an inverted enantioselectivity towards allantoin (R‐enantioselective), which is a distinguishable feature that is not observed for other allantoinases. In this work, B. licheniformis ATCC 14580 allantoinase (AllBali) containing a C‐terminal His6 tag was overproduced in Escherichia coli and purified to homogeneity. Crystals of AllBali were obtained by the vapour‐diffusion method using 0.1 M potassium thiocyanate, 20%(w/v) polyethylene glycol 3350 as a crystallization solution. X‐ray diffraction data were collected to a resolution of 3.5 Å with an Rmerge of 29.2% from a crystal belonging to space group P1211, with unit‐cell parameters a = 54.93, b = 164.74, c = 106.89 Å, β = 98.49°. There are four molecules in the asymmetric unit with a solvent content of 47% as estimated from the Matthews coefficient (VM = 2.34 Å3 Da−1).</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>25372819</pmid><doi>10.1107/S2053230X14021608</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2053-230X
ispartof Acta crystallographica. Section F, Structural biology communications, 2014-11, Vol.70 (11), p.1513-1516
issn 2053-230X
2053-230X
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4231854
source MEDLINE; Wiley Journals; PubMed Central; Free Full-Text Journals in Chemistry
subjects allantoin
allantoinase
amidohydrolase
Amidohydrolases - biosynthesis
Amidohydrolases - chemistry
Amidohydrolases - isolation & purification
Bacillus - enzymology
Bacillus licheniformis
Cloning, Molecular - methods
Crystallization Communications
Gene Expression Regulation, Bacterial
X-Ray Diffraction
title Cloning, expression, purification, crystallization and preliminary X-ray characterization of allantoinase from Bacillus licheniformis ATCC 14580
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T07%3A38%3A22IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Cloning,%20expression,%20purification,%20crystallization%20and%20preliminary%20X-ray%20characterization%20of%20allantoinase%20from%20Bacillus%20licheniformis%20ATCC%2014580&rft.jtitle=Acta%20crystallographica.%20Section%20F,%20Structural%20biology%20communications&rft.au=Conejero-Muriel,%20Mayte&rft.date=2014-11&rft.volume=70&rft.issue=11&rft.spage=1513&rft.epage=1516&rft.pages=1513-1516&rft.issn=2053-230X&rft.eissn=2053-230X&rft_id=info:doi/10.1107/S2053230X14021608&rft_dat=%3Cproquest_pubme%3E3482886021%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1620490031&rft_id=info:pmid/25372819&rfr_iscdi=true