Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)
The WRKY transcription factor is an important member of the stress-related transcription factors, which mediate diverse abiotic stresses in many plants. However, up until now, the number of WRKY members, and the regulatory mechanisms involved in abiotic stress responses in Pak-choi (Brassica campest...
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| Veröffentlicht in: | BMC plant biology 2013-11, Vol.13 (1), p.188-188, Article 188 |
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| creator | Tang, Jun Wang, Feng Wang, Zhen Huang, Zhinan Xiong, Aisheng Hou, Xilin |
| description | The WRKY transcription factor is an important member of the stress-related transcription factors, which mediate diverse abiotic stresses in many plants. However, up until now, the number of WRKY members, and the regulatory mechanisms involved in abiotic stress responses in Pak-choi (Brassica campestris ssp. chinensis), remained unknown.
We isolated and identified 56 full-length WRKY cDNAs from a Pak-choi stress-induced cDNA library. The 56 putative BcWRKY proteins were divided into three groups based on structural and phylogenetic analyses. A subcellular localization prediction indicated that the putative BcWRKY proteins were enriched in the nuclear region. Experiments involving BcWRKY25 and BcWRKY40 confirmed the prediction. A total of 22 BcWRKYs were differentially expressed in response to at least one stress condition (abscisic acid, cold, salinity, heat, or osmosis) tested on Pak-choi leaves, and a co-expression analysis indicated stress-inducible BcWRKYs co-regulated multiple abiotic stresses. BcWRKY33, BcWRKY40, BcWRKY53, and BcWRKY70 acted as key regulators and played dominant roles within co-regulatory networks of stress-inducible BcWRKYs.
We first isolated and characterized the 56 stress-inducible WRKY transcription factor family members. A total of 22 stress-inducible BcWRKYs found in leaves can co-regulate multiple environmental stresses by integrating the potential mutual interactions of WRKYs in Pak-choi. This information will be valuable when exploring the molecular mechanisms of WRKYs in response to abiotic stresses in plants. |
| doi_str_mv | 10.1186/1471-2229-13-188 |
| format | Article |
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We isolated and identified 56 full-length WRKY cDNAs from a Pak-choi stress-induced cDNA library. The 56 putative BcWRKY proteins were divided into three groups based on structural and phylogenetic analyses. A subcellular localization prediction indicated that the putative BcWRKY proteins were enriched in the nuclear region. Experiments involving BcWRKY25 and BcWRKY40 confirmed the prediction. A total of 22 BcWRKYs were differentially expressed in response to at least one stress condition (abscisic acid, cold, salinity, heat, or osmosis) tested on Pak-choi leaves, and a co-expression analysis indicated stress-inducible BcWRKYs co-regulated multiple abiotic stresses. BcWRKY33, BcWRKY40, BcWRKY53, and BcWRKY70 acted as key regulators and played dominant roles within co-regulatory networks of stress-inducible BcWRKYs.
We first isolated and characterized the 56 stress-inducible WRKY transcription factor family members. A total of 22 stress-inducible BcWRKYs found in leaves can co-regulate multiple environmental stresses by integrating the potential mutual interactions of WRKYs in Pak-choi. This information will be valuable when exploring the molecular mechanisms of WRKYs in response to abiotic stresses in plants.</description><identifier>ISSN: 1471-2229</identifier><identifier>EISSN: 1471-2229</identifier><identifier>DOI: 10.1186/1471-2229-13-188</identifier><identifier>PMID: 24267479</identifier><language>eng</language><publisher>England: BioMed Central Ltd</publisher><subject>Abiotic stress ; Abscisic acid ; Amino Acid Motifs ; Amino Acid Sequence ; Brassica - genetics ; Brassica - physiology ; Brassica rapa subsp. chinensis ; cDNA libraries ; Cloning ; Cloning, Molecular ; Cold ; complementary DNA ; DNA binding proteins ; Gene expression ; gene expression regulation ; Gene Expression Regulation, Plant ; Gene Regulatory Networks ; Genes, Plant ; Genetic aspects ; Genomic libraries ; heat ; leaves ; Microbiology ; Molecular Sequence Data ; Molecular weight ; osmosis ; Phylogenetics ; Phylogeny ; Plant Proteins - chemistry ; Plant Proteins - genetics ; Plant Proteins - metabolism ; prediction ; Protein Structure, Tertiary ; Protein Transport ; Proteins ; Salinity ; Sequence Alignment ; Sequence Homology, Amino Acid ; Stress (Physiology) ; stress response ; Stress, Physiological - genetics ; Studies ; Subcellular Fractions - metabolism ; Transcription factors ; Turnips</subject><ispartof>BMC plant biology, 2013-11, Vol.13 (1), p.188-188, Article 188</ispartof><rights>COPYRIGHT 2013 BioMed Central Ltd.</rights><rights>2013 Tang et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>Copyright © 2013 Tang et al.; licensee BioMed Central Ltd. 2013 Tang et al.; licensee BioMed Central Ltd.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b618t-434ced33556cc68f9d58e6f61e4188c18c330da08b8940829ff08b1685af2713</citedby><cites>FETCH-LOGICAL-b618t-434ced33556cc68f9d58e6f61e4188c18c330da08b8940829ff08b1685af2713</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222839/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222839/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24267479$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tang, Jun</creatorcontrib><creatorcontrib>Wang, Feng</creatorcontrib><creatorcontrib>Wang, Zhen</creatorcontrib><creatorcontrib>Huang, Zhinan</creatorcontrib><creatorcontrib>Xiong, Aisheng</creatorcontrib><creatorcontrib>Hou, Xilin</creatorcontrib><title>Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)</title><title>BMC plant biology</title><addtitle>BMC Plant Biol</addtitle><description>The WRKY transcription factor is an important member of the stress-related transcription factors, which mediate diverse abiotic stresses in many plants. However, up until now, the number of WRKY members, and the regulatory mechanisms involved in abiotic stress responses in Pak-choi (Brassica campestris ssp. chinensis), remained unknown.
We isolated and identified 56 full-length WRKY cDNAs from a Pak-choi stress-induced cDNA library. The 56 putative BcWRKY proteins were divided into three groups based on structural and phylogenetic analyses. A subcellular localization prediction indicated that the putative BcWRKY proteins were enriched in the nuclear region. Experiments involving BcWRKY25 and BcWRKY40 confirmed the prediction. A total of 22 BcWRKYs were differentially expressed in response to at least one stress condition (abscisic acid, cold, salinity, heat, or osmosis) tested on Pak-choi leaves, and a co-expression analysis indicated stress-inducible BcWRKYs co-regulated multiple abiotic stresses. BcWRKY33, BcWRKY40, BcWRKY53, and BcWRKY70 acted as key regulators and played dominant roles within co-regulatory networks of stress-inducible BcWRKYs.
We first isolated and characterized the 56 stress-inducible WRKY transcription factor family members. A total of 22 stress-inducible BcWRKYs found in leaves can co-regulate multiple environmental stresses by integrating the potential mutual interactions of WRKYs in Pak-choi. This information will be valuable when exploring the molecular mechanisms of WRKYs in response to abiotic stresses in plants.</description><subject>Abiotic stress</subject><subject>Abscisic acid</subject><subject>Amino Acid Motifs</subject><subject>Amino Acid Sequence</subject><subject>Brassica - genetics</subject><subject>Brassica - physiology</subject><subject>Brassica rapa subsp. chinensis</subject><subject>cDNA libraries</subject><subject>Cloning</subject><subject>Cloning, Molecular</subject><subject>Cold</subject><subject>complementary DNA</subject><subject>DNA binding proteins</subject><subject>Gene expression</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Plant</subject><subject>Gene Regulatory Networks</subject><subject>Genes, Plant</subject><subject>Genetic aspects</subject><subject>Genomic libraries</subject><subject>heat</subject><subject>leaves</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Molecular weight</subject><subject>osmosis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Proteins - chemistry</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>prediction</subject><subject>Protein Structure, Tertiary</subject><subject>Protein Transport</subject><subject>Proteins</subject><subject>Salinity</subject><subject>Sequence Alignment</subject><subject>Sequence Homology, Amino Acid</subject><subject>Stress (Physiology)</subject><subject>stress response</subject><subject>Stress, Physiological - genetics</subject><subject>Studies</subject><subject>Subcellular Fractions - metabolism</subject><subject>Transcription factors</subject><subject>Turnips</subject><issn>1471-2229</issn><issn>1471-2229</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFUk1v1DAQjRCIloU7J2SJS3vIYseO41yQyoqPikqgUglxsryOs-uS2MF2Vi3_hn_KhC1LFxUhHzwav3lvPG-y7CnBc0IEf0FYRfKiKOqc0JwIcS873KXu34oPskcxXmJMKsHqh9lBwQpesao-zH4s1ioonUyw31Wy3iHlGqR9bq6GYGLcZlR3HW1EvkWfz99_QT6kte_8KiLrNr7bmAYCBPDBu2giSh71Y5fs0BmkltYnq1FME52ZStBH9TXXa2_R0augQEMrpFU_GMCASozDHOm1dcaB6PHj7EGrumie3Nyz7OLN64vFu_zsw9vTxclZvuREpJxRpk1DaVlyrblo66YUhrecGAaD0URoSnGjsFiKmmFR1G0LMeGiVG1RETrLXm5ph3HZm0Ybl4Lq5BBsr8K19MrK_Rdn13LlN5LBgAWtgWCxJYAP_4Ng_0X7Xk4OyckhSaiEPoHl6KaN4L-NMBHZ26hN1yln_BhlgcHFgpWU_RdKGK8wL2syfe75X9BLPwaw9ReKU85rXPxBrVRnpHWthz71RCpPQLCE5QHhWTa_AwWnMb3V3pnWQn6v4HivADDJXKWVGmOUp5_O97F4i9XBxxhMu5sfwXJa-bsm9uy2cbuC3ztOfwK5fvzV</recordid><startdate>20131125</startdate><enddate>20131125</enddate><creator>Tang, Jun</creator><creator>Wang, Feng</creator><creator>Wang, Zhen</creator><creator>Huang, Zhinan</creator><creator>Xiong, Aisheng</creator><creator>Hou, Xilin</creator><general>BioMed Central Ltd</general><general>BioMed Central</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope></search><sort><creationdate>20131125</creationdate><title>Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)</title><author>Tang, Jun ; Wang, Feng ; Wang, Zhen ; Huang, Zhinan ; Xiong, Aisheng ; Hou, Xilin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b618t-434ced33556cc68f9d58e6f61e4188c18c330da08b8940829ff08b1685af2713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Abiotic stress</topic><topic>Abscisic acid</topic><topic>Amino Acid Motifs</topic><topic>Amino Acid Sequence</topic><topic>Brassica - genetics</topic><topic>Brassica - physiology</topic><topic>Brassica rapa subsp. chinensis</topic><topic>cDNA libraries</topic><topic>Cloning</topic><topic>Cloning, Molecular</topic><topic>Cold</topic><topic>complementary DNA</topic><topic>DNA binding proteins</topic><topic>Gene expression</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Plant</topic><topic>Gene Regulatory Networks</topic><topic>Genes, Plant</topic><topic>Genetic aspects</topic><topic>Genomic libraries</topic><topic>heat</topic><topic>leaves</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Molecular weight</topic><topic>osmosis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Proteins - chemistry</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>prediction</topic><topic>Protein Structure, Tertiary</topic><topic>Protein Transport</topic><topic>Proteins</topic><topic>Salinity</topic><topic>Sequence Alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>Stress (Physiology)</topic><topic>stress response</topic><topic>Stress, Physiological - genetics</topic><topic>Studies</topic><topic>Subcellular Fractions - metabolism</topic><topic>Transcription factors</topic><topic>Turnips</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tang, Jun</creatorcontrib><creatorcontrib>Wang, Feng</creatorcontrib><creatorcontrib>Wang, Zhen</creatorcontrib><creatorcontrib>Huang, Zhinan</creatorcontrib><creatorcontrib>Xiong, Aisheng</creatorcontrib><creatorcontrib>Hou, Xilin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>BMC plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tang, Jun</au><au>Wang, Feng</au><au>Wang, Zhen</au><au>Huang, Zhinan</au><au>Xiong, Aisheng</au><au>Hou, Xilin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)</atitle><jtitle>BMC plant biology</jtitle><addtitle>BMC Plant Biol</addtitle><date>2013-11-25</date><risdate>2013</risdate><volume>13</volume><issue>1</issue><spage>188</spage><epage>188</epage><pages>188-188</pages><artnum>188</artnum><issn>1471-2229</issn><eissn>1471-2229</eissn><abstract>The WRKY transcription factor is an important member of the stress-related transcription factors, which mediate diverse abiotic stresses in many plants. However, up until now, the number of WRKY members, and the regulatory mechanisms involved in abiotic stress responses in Pak-choi (Brassica campestris ssp. chinensis), remained unknown.
We isolated and identified 56 full-length WRKY cDNAs from a Pak-choi stress-induced cDNA library. The 56 putative BcWRKY proteins were divided into three groups based on structural and phylogenetic analyses. A subcellular localization prediction indicated that the putative BcWRKY proteins were enriched in the nuclear region. Experiments involving BcWRKY25 and BcWRKY40 confirmed the prediction. A total of 22 BcWRKYs were differentially expressed in response to at least one stress condition (abscisic acid, cold, salinity, heat, or osmosis) tested on Pak-choi leaves, and a co-expression analysis indicated stress-inducible BcWRKYs co-regulated multiple abiotic stresses. BcWRKY33, BcWRKY40, BcWRKY53, and BcWRKY70 acted as key regulators and played dominant roles within co-regulatory networks of stress-inducible BcWRKYs.
We first isolated and characterized the 56 stress-inducible WRKY transcription factor family members. A total of 22 stress-inducible BcWRKYs found in leaves can co-regulate multiple environmental stresses by integrating the potential mutual interactions of WRKYs in Pak-choi. This information will be valuable when exploring the molecular mechanisms of WRKYs in response to abiotic stresses in plants.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>24267479</pmid><doi>10.1186/1471-2229-13-188</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Abiotic stress Abscisic acid Amino Acid Motifs Amino Acid Sequence Brassica - genetics Brassica - physiology Brassica rapa subsp. chinensis cDNA libraries Cloning Cloning, Molecular Cold complementary DNA DNA binding proteins Gene expression gene expression regulation Gene Expression Regulation, Plant Gene Regulatory Networks Genes, Plant Genetic aspects Genomic libraries heat leaves Microbiology Molecular Sequence Data Molecular weight osmosis Phylogenetics Phylogeny Plant Proteins - chemistry Plant Proteins - genetics Plant Proteins - metabolism prediction Protein Structure, Tertiary Protein Transport Proteins Salinity Sequence Alignment Sequence Homology, Amino Acid Stress (Physiology) stress response Stress, Physiological - genetics Studies Subcellular Fractions - metabolism Transcription factors Turnips |
| title | Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis) |
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