Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China
The Yersinia pestis chromosome contains a large variety and number of insert sequences that have resulted in frequent chromosome rearrangement events. To identify the chromosomal rearrangement features of Y. pestis strains from five typical plague foci in China and study spontaneous DNA rearrangemen...
Gespeichert in:
| Veröffentlicht in: | The American journal of tropical medicine and hygiene 2014-10, Vol.91 (4), p.722-728 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 728 |
|---|---|
| container_issue | 4 |
| container_start_page | 722 |
| container_title | The American journal of tropical medicine and hygiene |
| container_volume | 91 |
| creator | Liang, Ying Xie, Fang Tang, Xinyuan Wang, Mei Zhang, Enmin Zhang, Zhikai Cai, Hong Wang, Yanhua Shen, Xiaona Zhao, Hongqun Yu, Dongzheng Xia, Lianxu Hai, Rong |
| description | The Yersinia pestis chromosome contains a large variety and number of insert sequences that have resulted in frequent chromosome rearrangement events. To identify the chromosomal rearrangement features of Y. pestis strains from five typical plague foci in China and study spontaneous DNA rearrangements potentially stabilized in certain lineages of Y. pestis genomes, we examined the linking mode of locally collinear blocks (LCBs) in 30 Y. pestis strains by a polymerase chain reaction-based method. Our results suggest most strains have relatively stable chromosomal arrangement patterns, and these rearrangement characteristics also have a very close relationship with the geographical origin. In addition, some LCB linking modes are only present in specific strains. We conclude Y. pestis chromosome rearrangement patterns may reflect the genetic features of specific geographical areas and can be applied to distinguish Y. pestis isolates; furthermore, most of the rearrangement events are stable in certain lineages of Y. pestis genomes. |
| doi_str_mv | 10.4269/ajtmh.13-0491 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4183394</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1753472530</sourcerecordid><originalsourceid>FETCH-LOGICAL-c420t-e043a4dee104fb8f6a1752f1240fe75b9cc07101473f27c06b946551ff438b193</originalsourceid><addsrcrecordid>eNqFkb1vFDEQxS0EIpdASYtc0myY8cfuukFCpwCRIqUJRSrLuxnfOdq1D3sXif8eXxIiqKimmN97ek-PsXcI50q05qO7X-b9OcoGlMEXbIOqaxtslX7JNgAgGtPK7oSdlnIPgL1AfM1OhEZUAP2G2e0-pzmVNLuJZ3I5u7ijmeLCPbllzVR48vyWcgkxOH6gsoTCy5JdiIX7KubxyFX5YXK7lbhPY-Ah8u0-RPeGvfJuKvT26Z6x718ubrbfmqvrr5fbz1fNqAQsDYGSTt0RISg_9L512GnhUSjw1OnBjCN0CLWc9KIboR2MarVG75XsBzTyjH169D2sw0x3Yy1QI9lDDrPLv2xywf77iWFvd-mnVdhLaVQ1-PBkkNOPtba0cygjTZOLlNZiax6pOqEl_B_VfQvGdPoYq3lEx5xKyeSfEyHY4372YT-L0h73q_z7v2s8038Gk78BNJSYmg</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1586099759</pqid></control><display><type>article</type><title>Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China</title><source>MEDLINE</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><creator>Liang, Ying ; Xie, Fang ; Tang, Xinyuan ; Wang, Mei ; Zhang, Enmin ; Zhang, Zhikai ; Cai, Hong ; Wang, Yanhua ; Shen, Xiaona ; Zhao, Hongqun ; Yu, Dongzheng ; Xia, Lianxu ; Hai, Rong</creator><creatorcontrib>Liang, Ying ; Xie, Fang ; Tang, Xinyuan ; Wang, Mei ; Zhang, Enmin ; Zhang, Zhikai ; Cai, Hong ; Wang, Yanhua ; Shen, Xiaona ; Zhao, Hongqun ; Yu, Dongzheng ; Xia, Lianxu ; Hai, Rong</creatorcontrib><description>The Yersinia pestis chromosome contains a large variety and number of insert sequences that have resulted in frequent chromosome rearrangement events. To identify the chromosomal rearrangement features of Y. pestis strains from five typical plague foci in China and study spontaneous DNA rearrangements potentially stabilized in certain lineages of Y. pestis genomes, we examined the linking mode of locally collinear blocks (LCBs) in 30 Y. pestis strains by a polymerase chain reaction-based method. Our results suggest most strains have relatively stable chromosomal arrangement patterns, and these rearrangement characteristics also have a very close relationship with the geographical origin. In addition, some LCB linking modes are only present in specific strains. We conclude Y. pestis chromosome rearrangement patterns may reflect the genetic features of specific geographical areas and can be applied to distinguish Y. pestis isolates; furthermore, most of the rearrangement events are stable in certain lineages of Y. pestis genomes.</description><identifier>ISSN: 0002-9637</identifier><identifier>EISSN: 1476-1645</identifier><identifier>DOI: 10.4269/ajtmh.13-0491</identifier><identifier>PMID: 25114008</identifier><language>eng</language><publisher>United States: The American Society of Tropical Medicine and Hygiene</publisher><subject>Animals ; Arvicolinae ; Base Sequence ; China ; Chromosomes, Bacterial - genetics ; Disease Reservoirs ; DNA Primers - genetics ; Gene Rearrangement ; Genome, Bacterial - genetics ; Genotype ; Geography ; Humans ; Murinae ; Phylogeny ; Plague - microbiology ; Polymerase Chain Reaction - methods ; Rats ; Sequence Analysis, DNA ; Yersinia pestis ; Yersinia pestis - classification ; Yersinia pestis - genetics ; Yersinia pestis - isolation & purification</subject><ispartof>The American journal of tropical medicine and hygiene, 2014-10, Vol.91 (4), p.722-728</ispartof><rights>The American Society of Tropical Medicine and Hygiene.</rights><rights>The American Society of Tropical Medicine and Hygiene 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c420t-e043a4dee104fb8f6a1752f1240fe75b9cc07101473f27c06b946551ff438b193</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183394/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183394/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25114008$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liang, Ying</creatorcontrib><creatorcontrib>Xie, Fang</creatorcontrib><creatorcontrib>Tang, Xinyuan</creatorcontrib><creatorcontrib>Wang, Mei</creatorcontrib><creatorcontrib>Zhang, Enmin</creatorcontrib><creatorcontrib>Zhang, Zhikai</creatorcontrib><creatorcontrib>Cai, Hong</creatorcontrib><creatorcontrib>Wang, Yanhua</creatorcontrib><creatorcontrib>Shen, Xiaona</creatorcontrib><creatorcontrib>Zhao, Hongqun</creatorcontrib><creatorcontrib>Yu, Dongzheng</creatorcontrib><creatorcontrib>Xia, Lianxu</creatorcontrib><creatorcontrib>Hai, Rong</creatorcontrib><title>Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China</title><title>The American journal of tropical medicine and hygiene</title><addtitle>Am J Trop Med Hyg</addtitle><description>The Yersinia pestis chromosome contains a large variety and number of insert sequences that have resulted in frequent chromosome rearrangement events. To identify the chromosomal rearrangement features of Y. pestis strains from five typical plague foci in China and study spontaneous DNA rearrangements potentially stabilized in certain lineages of Y. pestis genomes, we examined the linking mode of locally collinear blocks (LCBs) in 30 Y. pestis strains by a polymerase chain reaction-based method. Our results suggest most strains have relatively stable chromosomal arrangement patterns, and these rearrangement characteristics also have a very close relationship with the geographical origin. In addition, some LCB linking modes are only present in specific strains. We conclude Y. pestis chromosome rearrangement patterns may reflect the genetic features of specific geographical areas and can be applied to distinguish Y. pestis isolates; furthermore, most of the rearrangement events are stable in certain lineages of Y. pestis genomes.</description><subject>Animals</subject><subject>Arvicolinae</subject><subject>Base Sequence</subject><subject>China</subject><subject>Chromosomes, Bacterial - genetics</subject><subject>Disease Reservoirs</subject><subject>DNA Primers - genetics</subject><subject>Gene Rearrangement</subject><subject>Genome, Bacterial - genetics</subject><subject>Genotype</subject><subject>Geography</subject><subject>Humans</subject><subject>Murinae</subject><subject>Phylogeny</subject><subject>Plague - microbiology</subject><subject>Polymerase Chain Reaction - methods</subject><subject>Rats</subject><subject>Sequence Analysis, DNA</subject><subject>Yersinia pestis</subject><subject>Yersinia pestis - classification</subject><subject>Yersinia pestis - genetics</subject><subject>Yersinia pestis - isolation & purification</subject><issn>0002-9637</issn><issn>1476-1645</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkb1vFDEQxS0EIpdASYtc0myY8cfuukFCpwCRIqUJRSrLuxnfOdq1D3sXif8eXxIiqKimmN97ek-PsXcI50q05qO7X-b9OcoGlMEXbIOqaxtslX7JNgAgGtPK7oSdlnIPgL1AfM1OhEZUAP2G2e0-pzmVNLuJZ3I5u7ijmeLCPbllzVR48vyWcgkxOH6gsoTCy5JdiIX7KubxyFX5YXK7lbhPY-Ah8u0-RPeGvfJuKvT26Z6x718ubrbfmqvrr5fbz1fNqAQsDYGSTt0RISg_9L512GnhUSjw1OnBjCN0CLWc9KIboR2MarVG75XsBzTyjH169D2sw0x3Yy1QI9lDDrPLv2xywf77iWFvd-mnVdhLaVQ1-PBkkNOPtba0cygjTZOLlNZiax6pOqEl_B_VfQvGdPoYq3lEx5xKyeSfEyHY4372YT-L0h73q_z7v2s8038Gk78BNJSYmg</recordid><startdate>201410</startdate><enddate>201410</enddate><creator>Liang, Ying</creator><creator>Xie, Fang</creator><creator>Tang, Xinyuan</creator><creator>Wang, Mei</creator><creator>Zhang, Enmin</creator><creator>Zhang, Zhikai</creator><creator>Cai, Hong</creator><creator>Wang, Yanhua</creator><creator>Shen, Xiaona</creator><creator>Zhao, Hongqun</creator><creator>Yu, Dongzheng</creator><creator>Xia, Lianxu</creator><creator>Hai, Rong</creator><general>The American Society of Tropical Medicine and Hygiene</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>201410</creationdate><title>Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China</title><author>Liang, Ying ; Xie, Fang ; Tang, Xinyuan ; Wang, Mei ; Zhang, Enmin ; Zhang, Zhikai ; Cai, Hong ; Wang, Yanhua ; Shen, Xiaona ; Zhao, Hongqun ; Yu, Dongzheng ; Xia, Lianxu ; Hai, Rong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-e043a4dee104fb8f6a1752f1240fe75b9cc07101473f27c06b946551ff438b193</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Animals</topic><topic>Arvicolinae</topic><topic>Base Sequence</topic><topic>China</topic><topic>Chromosomes, Bacterial - genetics</topic><topic>Disease Reservoirs</topic><topic>DNA Primers - genetics</topic><topic>Gene Rearrangement</topic><topic>Genome, Bacterial - genetics</topic><topic>Genotype</topic><topic>Geography</topic><topic>Humans</topic><topic>Murinae</topic><topic>Phylogeny</topic><topic>Plague - microbiology</topic><topic>Polymerase Chain Reaction - methods</topic><topic>Rats</topic><topic>Sequence Analysis, DNA</topic><topic>Yersinia pestis</topic><topic>Yersinia pestis - classification</topic><topic>Yersinia pestis - genetics</topic><topic>Yersinia pestis - isolation & purification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liang, Ying</creatorcontrib><creatorcontrib>Xie, Fang</creatorcontrib><creatorcontrib>Tang, Xinyuan</creatorcontrib><creatorcontrib>Wang, Mei</creatorcontrib><creatorcontrib>Zhang, Enmin</creatorcontrib><creatorcontrib>Zhang, Zhikai</creatorcontrib><creatorcontrib>Cai, Hong</creatorcontrib><creatorcontrib>Wang, Yanhua</creatorcontrib><creatorcontrib>Shen, Xiaona</creatorcontrib><creatorcontrib>Zhao, Hongqun</creatorcontrib><creatorcontrib>Yu, Dongzheng</creatorcontrib><creatorcontrib>Xia, Lianxu</creatorcontrib><creatorcontrib>Hai, Rong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The American journal of tropical medicine and hygiene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liang, Ying</au><au>Xie, Fang</au><au>Tang, Xinyuan</au><au>Wang, Mei</au><au>Zhang, Enmin</au><au>Zhang, Zhikai</au><au>Cai, Hong</au><au>Wang, Yanhua</au><au>Shen, Xiaona</au><au>Zhao, Hongqun</au><au>Yu, Dongzheng</au><au>Xia, Lianxu</au><au>Hai, Rong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China</atitle><jtitle>The American journal of tropical medicine and hygiene</jtitle><addtitle>Am J Trop Med Hyg</addtitle><date>2014-10</date><risdate>2014</risdate><volume>91</volume><issue>4</issue><spage>722</spage><epage>728</epage><pages>722-728</pages><issn>0002-9637</issn><eissn>1476-1645</eissn><abstract>The Yersinia pestis chromosome contains a large variety and number of insert sequences that have resulted in frequent chromosome rearrangement events. To identify the chromosomal rearrangement features of Y. pestis strains from five typical plague foci in China and study spontaneous DNA rearrangements potentially stabilized in certain lineages of Y. pestis genomes, we examined the linking mode of locally collinear blocks (LCBs) in 30 Y. pestis strains by a polymerase chain reaction-based method. Our results suggest most strains have relatively stable chromosomal arrangement patterns, and these rearrangement characteristics also have a very close relationship with the geographical origin. In addition, some LCB linking modes are only present in specific strains. We conclude Y. pestis chromosome rearrangement patterns may reflect the genetic features of specific geographical areas and can be applied to distinguish Y. pestis isolates; furthermore, most of the rearrangement events are stable in certain lineages of Y. pestis genomes.</abstract><cop>United States</cop><pub>The American Society of Tropical Medicine and Hygiene</pub><pmid>25114008</pmid><doi>10.4269/ajtmh.13-0491</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0002-9637 |
| ispartof | The American journal of tropical medicine and hygiene, 2014-10, Vol.91 (4), p.722-728 |
| issn | 0002-9637 1476-1645 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4183394 |
| source | MEDLINE; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Animals Arvicolinae Base Sequence China Chromosomes, Bacterial - genetics Disease Reservoirs DNA Primers - genetics Gene Rearrangement Genome, Bacterial - genetics Genotype Geography Humans Murinae Phylogeny Plague - microbiology Polymerase Chain Reaction - methods Rats Sequence Analysis, DNA Yersinia pestis Yersinia pestis - classification Yersinia pestis - genetics Yersinia pestis - isolation & purification |
| title | Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-26T11%3A48%3A24IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Chromosomal%20rearrangement%20features%20of%20Yersinia%20pestis%20strains%20from%20natural%20plague%20foci%20in%20China&rft.jtitle=The%20American%20journal%20of%20tropical%20medicine%20and%20hygiene&rft.au=Liang,%20Ying&rft.date=2014-10&rft.volume=91&rft.issue=4&rft.spage=722&rft.epage=728&rft.pages=722-728&rft.issn=0002-9637&rft.eissn=1476-1645&rft_id=info:doi/10.4269/ajtmh.13-0491&rft_dat=%3Cproquest_pubme%3E1753472530%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1586099759&rft_id=info:pmid/25114008&rfr_iscdi=true |