Convenient microtiter plate-based, oxygen-independent activity assays for flavin-dependent oxidoreductases based on different redox dyes
Flavin‐dependent oxidoreductases are increasingly recognized as important biocatalysts for various industrial applications. In order to identify novel activities and to improve these enzymes in engineering approaches, suitable screening methods are necessary. We developed novel microtiter‐plate‐base...
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description | Flavin‐dependent oxidoreductases are increasingly recognized as important biocatalysts for various industrial applications. In order to identify novel activities and to improve these enzymes in engineering approaches, suitable screening methods are necessary. We developed novel microtiter‐plate‐based assays for flavin‐dependent oxidases and dehydrogenases using redox dyes as electron acceptors for these enzymes. 2,6‐dichlorophenol‐indophenol, methylene green, and thionine show absorption changes between their oxidized and reduced forms in the visible range, making it easy to judge visually changes in activity. A sample set of enzymes containing both flavoprotein oxidases and dehydrogenases – pyranose 2‐oxidase, pyranose dehydrogenase, cellobiose dehydrogenase, D‐amino acid oxidase, and L‐lactate oxidase – was selected. Assays for these enzymes are based on a direct enzymatic reduction of the redox dyes and not on the coupled detection of a reaction product as in the frequently used assays based on hydrogen peroxide formation. The different flavoproteins show low Michaelis constants with these electron acceptor substrates, and therefore these dyes need to be added in only low concentrations to assure substrate saturation. In conclusion, these electron acceptors are useful in selective, reliable and cheap MTP‐based screening assays for a range of flavin‐dependent oxidoreductases, and offer a robust method for library screening, which could find applications in enzyme engineering programs.
Flavin‐dependent enzymes are of interest for a number of biotechnological applications, including their use in biocatalysis and biosensors. Identification of useful novel flavin‐dependent enzymes as well as tailoring their properties by protein engineering approaches is often hampered by the availability of suitable screening methods. Various redox dyes can be used in simple, rapid and robust screening assays for a range of flavin‐dependent oxidoreductases, which can facilitate the application of engineering approaches for this class of enzymes. |
doi_str_mv | 10.1002/biot.201300336 |
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Flavin‐dependent enzymes are of interest for a number of biotechnological applications, including their use in biocatalysis and biosensors. Identification of useful novel flavin‐dependent enzymes as well as tailoring their properties by protein engineering approaches is often hampered by the availability of suitable screening methods. Various redox dyes can be used in simple, rapid and robust screening assays for a range of flavin‐dependent oxidoreductases, which can facilitate the application of engineering approaches for this class of enzymes.</description><identifier>ISSN: 1860-6768</identifier><identifier>EISSN: 1860-7314</identifier><identifier>DOI: 10.1002/biot.201300336</identifier><identifier>PMID: 24376171</identifier><language>eng</language><publisher>Weinheim: WILEY-VCH Verlag</publisher><subject>2,6-Dichloroindophenol - analysis ; 2,6-Dichloroindophenol - chemistry ; 2,6-Dichloroindophenol - metabolism ; 2,6‐dichlorophenol‐indophenol ; 6-dichlorophenol-indophenol ; Coloring Agents - analysis ; Coloring Agents - chemistry ; Coloring Agents - metabolism ; Enzyme Assays - methods ; flavin-dependent oxidoreductases ; high-throughput screening ; High-Throughput Screening Assays ; Methylene Blue - analogs & derivatives ; Methylene Blue - analysis ; Methylene Blue - chemistry ; Methylene Blue - metabolism ; methylene green ; Oxidation-Reduction ; Oxidoreductases - metabolism ; Phenothiazines - analysis ; Phenothiazines - chemistry ; Phenothiazines - metabolism ; thionine</subject><ispartof>Biotechnology journal, 2014-04, Vol.9 (4), p.474-482</ispartof><rights>2014 The Authors. published by Wiley‐VCH Verlag GmbH & Co. KGaA, Weinheim. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.</rights><rights>2014 The Authors. Biotechnology Journal published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.</rights><rights>2014 The Authors. published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim. 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5776-d5ff2b81f5ad82ffd8fc7e257cd4f0fd01692fb25f0adbbd62c9f620dea7e8583</citedby><cites>FETCH-LOGICAL-c5776-d5ff2b81f5ad82ffd8fc7e257cd4f0fd01692fb25f0adbbd62c9f620dea7e8583</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fbiot.201300336$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fbiot.201300336$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24376171$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Brugger, Dagmar</creatorcontrib><creatorcontrib>Krondorfer, Iris</creatorcontrib><creatorcontrib>Zahma, Kawah</creatorcontrib><creatorcontrib>Stoisser, Thomas</creatorcontrib><creatorcontrib>Bolivar, Juan M.</creatorcontrib><creatorcontrib>Nidetzky, Bernd</creatorcontrib><creatorcontrib>Peterbauer, Clemens K.</creatorcontrib><creatorcontrib>Haltrich, Dietmar</creatorcontrib><title>Convenient microtiter plate-based, oxygen-independent activity assays for flavin-dependent oxidoreductases based on different redox dyes</title><title>Biotechnology journal</title><addtitle>Biotechnology Journal</addtitle><description>Flavin‐dependent oxidoreductases are increasingly recognized as important biocatalysts for various industrial applications. In order to identify novel activities and to improve these enzymes in engineering approaches, suitable screening methods are necessary. We developed novel microtiter‐plate‐based assays for flavin‐dependent oxidases and dehydrogenases using redox dyes as electron acceptors for these enzymes. 2,6‐dichlorophenol‐indophenol, methylene green, and thionine show absorption changes between their oxidized and reduced forms in the visible range, making it easy to judge visually changes in activity. A sample set of enzymes containing both flavoprotein oxidases and dehydrogenases – pyranose 2‐oxidase, pyranose dehydrogenase, cellobiose dehydrogenase, D‐amino acid oxidase, and L‐lactate oxidase – was selected. Assays for these enzymes are based on a direct enzymatic reduction of the redox dyes and not on the coupled detection of a reaction product as in the frequently used assays based on hydrogen peroxide formation. The different flavoproteins show low Michaelis constants with these electron acceptor substrates, and therefore these dyes need to be added in only low concentrations to assure substrate saturation. In conclusion, these electron acceptors are useful in selective, reliable and cheap MTP‐based screening assays for a range of flavin‐dependent oxidoreductases, and offer a robust method for library screening, which could find applications in enzyme engineering programs.
Flavin‐dependent enzymes are of interest for a number of biotechnological applications, including their use in biocatalysis and biosensors. Identification of useful novel flavin‐dependent enzymes as well as tailoring their properties by protein engineering approaches is often hampered by the availability of suitable screening methods. Various redox dyes can be used in simple, rapid and robust screening assays for a range of flavin‐dependent oxidoreductases, which can facilitate the application of engineering approaches for this class of enzymes.</description><subject>2,6-Dichloroindophenol - analysis</subject><subject>2,6-Dichloroindophenol - chemistry</subject><subject>2,6-Dichloroindophenol - metabolism</subject><subject>2,6‐dichlorophenol‐indophenol</subject><subject>6-dichlorophenol-indophenol</subject><subject>Coloring Agents - analysis</subject><subject>Coloring Agents - chemistry</subject><subject>Coloring Agents - metabolism</subject><subject>Enzyme Assays - methods</subject><subject>flavin-dependent oxidoreductases</subject><subject>high-throughput screening</subject><subject>High-Throughput Screening Assays</subject><subject>Methylene Blue - analogs & derivatives</subject><subject>Methylene Blue - analysis</subject><subject>Methylene Blue - chemistry</subject><subject>Methylene Blue - metabolism</subject><subject>methylene green</subject><subject>Oxidation-Reduction</subject><subject>Oxidoreductases - metabolism</subject><subject>Phenothiazines - analysis</subject><subject>Phenothiazines - chemistry</subject><subject>Phenothiazines - metabolism</subject><subject>thionine</subject><issn>1860-6768</issn><issn>1860-7314</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>EIF</sourceid><recordid>eNqNkU1vEzEQhlcIRL-4ckQ-cmCDP9b27gWJRlAqlRZVBSoulnc9LobNOthOmv0H_GwckoZygovH0jzzaEZvUTwleEIwpi9b59OEYsIwZkw8KPZJLXApGakebv9CinqvOIjxG8YVZ7h6XOzRiklBJNkvfk79sITBwZDQzHXBJ5cgoHmvE5StjmBeIL8ab2Ao3WBgDvnJqO6SW7o0Ih2jHiOyPiDb66Ubyj-QXznjA5hFl7Ioot865AdknLUQ1kju-hUyI8Sj4pHVfYQn23pYfHz75mr6rjy7ODmdvj4rOy6lKA23lrY1sVybmlprattJoFx2prLYGkxEQ21LucXatK0RtGusoNiAllDzmh0Wrzbe-aKdgenyFkH3ah7cTIdRee3U353BfVU3fqkqImjT4Cx4vhUE_2MBMamZix30vR7AL6IinGImORfkP1BCOeeS0YxONmiOIMYAdrcRwWqdtFonrXZJ54Fn9-_Y4XfRZqDZALeuh_EfOnV8enF1X15uZl1MsNrN6vBdCZmPU5_PT9R7Qj98-nJ5ra7ZL1Chyto</recordid><startdate>201404</startdate><enddate>201404</enddate><creator>Brugger, Dagmar</creator><creator>Krondorfer, Iris</creator><creator>Zahma, Kawah</creator><creator>Stoisser, Thomas</creator><creator>Bolivar, Juan M.</creator><creator>Nidetzky, Bernd</creator><creator>Peterbauer, Clemens K.</creator><creator>Haltrich, Dietmar</creator><general>WILEY-VCH Verlag</general><general>WILEY‐VCH Verlag</general><scope>BSCLL</scope><scope>24P</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>5PM</scope></search><sort><creationdate>201404</creationdate><title>Convenient microtiter plate-based, oxygen-independent activity assays for flavin-dependent oxidoreductases based on different redox dyes</title><author>Brugger, Dagmar ; 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In order to identify novel activities and to improve these enzymes in engineering approaches, suitable screening methods are necessary. We developed novel microtiter‐plate‐based assays for flavin‐dependent oxidases and dehydrogenases using redox dyes as electron acceptors for these enzymes. 2,6‐dichlorophenol‐indophenol, methylene green, and thionine show absorption changes between their oxidized and reduced forms in the visible range, making it easy to judge visually changes in activity. A sample set of enzymes containing both flavoprotein oxidases and dehydrogenases – pyranose 2‐oxidase, pyranose dehydrogenase, cellobiose dehydrogenase, D‐amino acid oxidase, and L‐lactate oxidase – was selected. Assays for these enzymes are based on a direct enzymatic reduction of the redox dyes and not on the coupled detection of a reaction product as in the frequently used assays based on hydrogen peroxide formation. The different flavoproteins show low Michaelis constants with these electron acceptor substrates, and therefore these dyes need to be added in only low concentrations to assure substrate saturation. In conclusion, these electron acceptors are useful in selective, reliable and cheap MTP‐based screening assays for a range of flavin‐dependent oxidoreductases, and offer a robust method for library screening, which could find applications in enzyme engineering programs.
Flavin‐dependent enzymes are of interest for a number of biotechnological applications, including their use in biocatalysis and biosensors. Identification of useful novel flavin‐dependent enzymes as well as tailoring their properties by protein engineering approaches is often hampered by the availability of suitable screening methods. Various redox dyes can be used in simple, rapid and robust screening assays for a range of flavin‐dependent oxidoreductases, which can facilitate the application of engineering approaches for this class of enzymes.</abstract><cop>Weinheim</cop><pub>WILEY-VCH Verlag</pub><pmid>24376171</pmid><doi>10.1002/biot.201300336</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 2,6-Dichloroindophenol - analysis 2,6-Dichloroindophenol - chemistry 2,6-Dichloroindophenol - metabolism 2,6‐dichlorophenol‐indophenol 6-dichlorophenol-indophenol Coloring Agents - analysis Coloring Agents - chemistry Coloring Agents - metabolism Enzyme Assays - methods flavin-dependent oxidoreductases high-throughput screening High-Throughput Screening Assays Methylene Blue - analogs & derivatives Methylene Blue - analysis Methylene Blue - chemistry Methylene Blue - metabolism methylene green Oxidation-Reduction Oxidoreductases - metabolism Phenothiazines - analysis Phenothiazines - chemistry Phenothiazines - metabolism thionine |
title | Convenient microtiter plate-based, oxygen-independent activity assays for flavin-dependent oxidoreductases based on different redox dyes |
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