A general protocol for the crystallization of membrane proteins for X-ray structural investigation
Protein crystallography is used to generate atomic resolution structures of protein molecules. These structures provide information about biological function, mechanism and interaction of a protein with substrates or effectors including DNA, RNA, cofactors or other small molecules, ions and other pr...
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Veröffentlicht in: | Nature protocols 2009-01, Vol.4 (5), p.619-637 |
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description | Protein crystallography is used to generate atomic resolution structures of protein molecules. These structures provide information about biological function, mechanism and interaction of a protein with substrates or effectors including DNA, RNA, cofactors or other small molecules, ions and other proteins. This technique can be applied to membrane proteins resident in the membranes of cells. To accomplish this, membrane proteins first need to be either heterologously expressed or purified from a native source. The protein has to be extracted from the lipid membrane with a mild detergent and purified to a stable, homogeneous population that may then be crystallized. Protein crystals are then used for X-ray diffraction to yield atomic resolution structures of the desired membrane protein target. Below, we present a general protocol for the growth of diffraction quality membrane protein crystals. The process of protein crystallization is highly variable, and obtaining diffraction quality crystals can require weeks to months or even years in some cases. |
doi_str_mv | 10.1038/nprot.2009.27 |
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These structures provide information about biological function, mechanism and interaction of a protein with substrates or effectors including DNA, RNA, cofactors or other small molecules, ions and other proteins. This technique can be applied to membrane proteins resident in the membranes of cells. To accomplish this, membrane proteins first need to be either heterologously expressed or purified from a native source. The protein has to be extracted from the lipid membrane with a mild detergent and purified to a stable, homogeneous population that may then be crystallized. Protein crystals are then used for X-ray diffraction to yield atomic resolution structures of the desired membrane protein target. Below, we present a general protocol for the growth of diffraction quality membrane protein crystals. The process of protein crystallization is highly variable, and obtaining diffraction quality crystals can require weeks to months or even years in some cases.</description><identifier>ISSN: 1754-2189</identifier><identifier>EISSN: 1750-2799</identifier><identifier>DOI: 10.1038/nprot.2009.27</identifier><identifier>PMID: 19360018</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>Analytical Chemistry ; Biological Techniques ; Biomedical and Life Sciences ; Chromatography, Affinity ; Chromatography, Gel ; Cloning, Molecular ; Computational Biology/Bioinformatics ; Crystallization ; Crystallization - methods ; Crystallography ; Crystallography, X-Ray ; Crystals ; Deoxyribonucleic acid ; Detergents ; DNA ; Escherichia coli - genetics ; Ions ; Life Sciences ; Membrane proteins ; Membrane Proteins - chemistry ; Membrane Proteins - genetics ; Membrane Proteins - isolation & purification ; Membranes ; Methods ; Microarrays ; Organic Chemistry ; Protein research ; Protein Structure, Tertiary ; Proteins ; Protocol ; Solubility ; Structure ; X-ray crystallography ; X-ray diffraction ; Yeast</subject><ispartof>Nature protocols, 2009-01, Vol.4 (5), p.619-637</ispartof><rights>Springer Nature Limited 2009</rights><rights>COPYRIGHT 2009 Nature Publishing Group</rights><rights>Copyright Nature Publishing Group May 2009</rights><rights>2009 Nature Publishing Group 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c820t-469695691cbf7bd4a1a99ced5de35876092dff51ebe6702b58c8f076033cef0d3</citedby><cites>FETCH-LOGICAL-c820t-469695691cbf7bd4a1a99ced5de35876092dff51ebe6702b58c8f076033cef0d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,2727,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19360018$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Stroud, Robert M</creatorcontrib><creatorcontrib>Newby, Zachary E R</creatorcontrib><creatorcontrib>O'Connell, Joseph D</creatorcontrib><creatorcontrib>Gruswitz, Franz</creatorcontrib><creatorcontrib>Hays, Franklin A</creatorcontrib><creatorcontrib>Harries, William E C</creatorcontrib><creatorcontrib>Harwood, Ian M</creatorcontrib><creatorcontrib>Ho, Joseph D</creatorcontrib><creatorcontrib>Lee, John K</creatorcontrib><creatorcontrib>Savage, David F</creatorcontrib><creatorcontrib>Miercke, Larry J W</creatorcontrib><title>A general protocol for the crystallization of membrane proteins for X-ray structural investigation</title><title>Nature protocols</title><addtitle>Nat Protoc</addtitle><addtitle>Nat Protoc</addtitle><description>Protein crystallography is used to generate atomic resolution structures of protein molecules. These structures provide information about biological function, mechanism and interaction of a protein with substrates or effectors including DNA, RNA, cofactors or other small molecules, ions and other proteins. This technique can be applied to membrane proteins resident in the membranes of cells. To accomplish this, membrane proteins first need to be either heterologously expressed or purified from a native source. The protein has to be extracted from the lipid membrane with a mild detergent and purified to a stable, homogeneous population that may then be crystallized. Protein crystals are then used for X-ray diffraction to yield atomic resolution structures of the desired membrane protein target. Below, we present a general protocol for the growth of diffraction quality membrane protein crystals. The process of protein crystallization is highly variable, and obtaining diffraction quality crystals can require weeks to months or even years in some cases.</description><subject>Analytical Chemistry</subject><subject>Biological Techniques</subject><subject>Biomedical and Life Sciences</subject><subject>Chromatography, Affinity</subject><subject>Chromatography, Gel</subject><subject>Cloning, Molecular</subject><subject>Computational Biology/Bioinformatics</subject><subject>Crystallization</subject><subject>Crystallization - methods</subject><subject>Crystallography</subject><subject>Crystallography, X-Ray</subject><subject>Crystals</subject><subject>Deoxyribonucleic acid</subject><subject>Detergents</subject><subject>DNA</subject><subject>Escherichia coli - genetics</subject><subject>Ions</subject><subject>Life Sciences</subject><subject>Membrane proteins</subject><subject>Membrane Proteins - chemistry</subject><subject>Membrane Proteins - genetics</subject><subject>Membrane Proteins - isolation & purification</subject><subject>Membranes</subject><subject>Methods</subject><subject>Microarrays</subject><subject>Organic Chemistry</subject><subject>Protein research</subject><subject>Protein Structure, Tertiary</subject><subject>Proteins</subject><subject>Protocol</subject><subject>Solubility</subject><subject>Structure</subject><subject>X-ray crystallography</subject><subject>X-ray diffraction</subject><subject>Yeast</subject><issn>1754-2189</issn><issn>1750-2799</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNk91r1TAYh4so7kMvvZWCIIj0mDRt0twIh4Mfg6GgE70Lafq2y2iTY9IOz_560-6wtTKd9KIled4neftLougZRiuMSPHGbJ3tVylCfJWyB9EhZjlKUsb5w-k7S1Jc8IPoyPsLhDJGKHscHWBOKEK4OIzKddyAASfbeBRZZdu4ti7uzyFWbud72bb6SvbamtjWcQdd6aSBCQZt_AT_SJzcxb53g-qHUaXNJfheN1Pdk-hRLVsPT_fv4-jb-3dnm4_J6ecPJ5v1aaKKFPVJRjnlOeVYlTUrq0xiybmCKq-A5AWjiKdVXecYSqAMpWVeqKJGYZwQBTWqyHH09tq7HcoOKgWmD3sRW6c76XbCSi2WM0afi8ZeigyxnDESBC_3Amd_DqEB0WmvoG1Dw3bwgjKMc5SyAL74A7ywgzOhOREySSnBLJtRjWxBaFPbsKoalWKdIsw5pfjfFOYFyTNSjNTqDio8FXRaWQO1DuML7X8VzFd4tSgITA-_-kYO3ouTr1-W8vvYuff139n12ffNp6X5fnruTq5p5az3DuqbsDEakyjEdDvEeDvElNvz-Qm5pffX4fav-TBlGnDzYO827tMzMpx8uDEuqd9fMiOl</recordid><startdate>20090101</startdate><enddate>20090101</enddate><creator>Stroud, Robert M</creator><creator>Newby, Zachary E R</creator><creator>O'Connell, Joseph D</creator><creator>Gruswitz, Franz</creator><creator>Hays, Franklin A</creator><creator>Harries, William E C</creator><creator>Harwood, Ian M</creator><creator>Ho, Joseph D</creator><creator>Lee, John K</creator><creator>Savage, David F</creator><creator>Miercke, Larry J W</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ATWCN</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20090101</creationdate><title>A general protocol for the crystallization of membrane proteins for X-ray structural investigation</title><author>Stroud, Robert M ; Newby, Zachary E R ; O'Connell, Joseph D ; Gruswitz, Franz ; Hays, Franklin A ; Harries, William E C ; Harwood, Ian M ; Ho, Joseph D ; Lee, John K ; Savage, David F ; Miercke, Larry J W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c820t-469695691cbf7bd4a1a99ced5de35876092dff51ebe6702b58c8f076033cef0d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Analytical Chemistry</topic><topic>Biological Techniques</topic><topic>Biomedical and Life Sciences</topic><topic>Chromatography, Affinity</topic><topic>Chromatography, Gel</topic><topic>Cloning, Molecular</topic><topic>Computational Biology/Bioinformatics</topic><topic>Crystallization</topic><topic>Crystallization - methods</topic><topic>Crystallography</topic><topic>Crystallography, X-Ray</topic><topic>Crystals</topic><topic>Deoxyribonucleic acid</topic><topic>Detergents</topic><topic>DNA</topic><topic>Escherichia coli - genetics</topic><topic>Ions</topic><topic>Life Sciences</topic><topic>Membrane proteins</topic><topic>Membrane Proteins - chemistry</topic><topic>Membrane Proteins - genetics</topic><topic>Membrane Proteins - isolation & purification</topic><topic>Membranes</topic><topic>Methods</topic><topic>Microarrays</topic><topic>Organic Chemistry</topic><topic>Protein research</topic><topic>Protein Structure, Tertiary</topic><topic>Proteins</topic><topic>Protocol</topic><topic>Solubility</topic><topic>Structure</topic><topic>X-ray crystallography</topic><topic>X-ray diffraction</topic><topic>Yeast</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Stroud, Robert M</creatorcontrib><creatorcontrib>Newby, Zachary E R</creatorcontrib><creatorcontrib>O'Connell, Joseph D</creatorcontrib><creatorcontrib>Gruswitz, Franz</creatorcontrib><creatorcontrib>Hays, Franklin A</creatorcontrib><creatorcontrib>Harries, William E C</creatorcontrib><creatorcontrib>Harwood, Ian M</creatorcontrib><creatorcontrib>Ho, Joseph D</creatorcontrib><creatorcontrib>Lee, John K</creatorcontrib><creatorcontrib>Savage, David F</creatorcontrib><creatorcontrib>Miercke, Larry J W</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Middle School</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nature protocols</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Stroud, Robert M</au><au>Newby, Zachary E R</au><au>O'Connell, Joseph D</au><au>Gruswitz, Franz</au><au>Hays, Franklin A</au><au>Harries, William E C</au><au>Harwood, Ian M</au><au>Ho, Joseph D</au><au>Lee, John K</au><au>Savage, David F</au><au>Miercke, Larry J W</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A general protocol for the crystallization of membrane proteins for X-ray structural investigation</atitle><jtitle>Nature protocols</jtitle><stitle>Nat Protoc</stitle><addtitle>Nat Protoc</addtitle><date>2009-01-01</date><risdate>2009</risdate><volume>4</volume><issue>5</issue><spage>619</spage><epage>637</epage><pages>619-637</pages><issn>1754-2189</issn><eissn>1750-2799</eissn><abstract>Protein crystallography is used to generate atomic resolution structures of protein molecules. These structures provide information about biological function, mechanism and interaction of a protein with substrates or effectors including DNA, RNA, cofactors or other small molecules, ions and other proteins. This technique can be applied to membrane proteins resident in the membranes of cells. To accomplish this, membrane proteins first need to be either heterologously expressed or purified from a native source. The protein has to be extracted from the lipid membrane with a mild detergent and purified to a stable, homogeneous population that may then be crystallized. Protein crystals are then used for X-ray diffraction to yield atomic resolution structures of the desired membrane protein target. Below, we present a general protocol for the growth of diffraction quality membrane protein crystals. The process of protein crystallization is highly variable, and obtaining diffraction quality crystals can require weeks to months or even years in some cases.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>19360018</pmid><doi>10.1038/nprot.2009.27</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Analytical Chemistry Biological Techniques Biomedical and Life Sciences Chromatography, Affinity Chromatography, Gel Cloning, Molecular Computational Biology/Bioinformatics Crystallization Crystallization - methods Crystallography Crystallography, X-Ray Crystals Deoxyribonucleic acid Detergents DNA Escherichia coli - genetics Ions Life Sciences Membrane proteins Membrane Proteins - chemistry Membrane Proteins - genetics Membrane Proteins - isolation & purification Membranes Methods Microarrays Organic Chemistry Protein research Protein Structure, Tertiary Proteins Protocol Solubility Structure X-ray crystallography X-ray diffraction Yeast |
title | A general protocol for the crystallization of membrane proteins for X-ray structural investigation |
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