Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes
Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morph...
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| Veröffentlicht in: | Scientific reports 2014-06, Vol.4 (1), p.5113-5113, Article 5113 |
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| creator | Hughey, Jeffery R. Gabrielson, Paul W. Rohmer, Laurence Tortolani, Jacquie Silva, Mayra Miller, Kathy Ann Young, Joel D. Martell, Craig Ruediger, Erik |
| description | Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morpho-anatomical characters, but recently systematists are using DNA sequence data. These studies are flawed if the DNA is isolated from misidentified modern specimens. We propose a genome-based solution. Using 4 × 4 mm
2
of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae
Pyropia perforata
,
Py. fucicola
and
Py. kanakaensis
. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19
th
and early 20
th
century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method. |
| doi_str_mv | 10.1038/srep05113 |
| format | Article |
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2
of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae
Pyropia perforata
,
Py. fucicola
and
Py. kanakaensis
. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19
th
and early 20
th
century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/srep05113</identifier><identifier>PMID: 24894641</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>45 ; 631/1647/2217 ; 631/449/2491/1870 ; Algae ; Base Sequence ; Chromosome Mapping - methods ; Deoxyribonucleic acid ; DNA ; Fungi ; Genome, Mitochondrial - genetics ; Genome, Plant - genetics ; Genome, Plastid - genetics ; Genomes ; Humanities and Social Sciences ; Mitochondria ; Molecular Sequence Data ; multidisciplinary ; Nucleotide sequence ; Plant species ; Rhodophyta - genetics ; Science ; Specimen Handling - methods</subject><ispartof>Scientific reports, 2014-06, Vol.4 (1), p.5113-5113, Article 5113</ispartof><rights>The Author(s) 2014</rights><rights>Copyright Nature Publishing Group Jun 2014</rights><rights>Copyright © 2014, Macmillan Publishers Limited. All rights reserved 2014 Macmillan Publishers Limited. All rights reserved</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c504t-29ad96501a477db8bcb4811ef74a091ca19b4fb1b69199b743384ec8c49037143</citedby><cites>FETCH-LOGICAL-c504t-29ad96501a477db8bcb4811ef74a091ca19b4fb1b69199b743384ec8c49037143</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044621/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044621/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,41120,42189,51576,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24894641$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hughey, Jeffery R.</creatorcontrib><creatorcontrib>Gabrielson, Paul W.</creatorcontrib><creatorcontrib>Rohmer, Laurence</creatorcontrib><creatorcontrib>Tortolani, Jacquie</creatorcontrib><creatorcontrib>Silva, Mayra</creatorcontrib><creatorcontrib>Miller, Kathy Ann</creatorcontrib><creatorcontrib>Young, Joel D.</creatorcontrib><creatorcontrib>Martell, Craig</creatorcontrib><creatorcontrib>Ruediger, Erik</creatorcontrib><title>Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morpho-anatomical characters, but recently systematists are using DNA sequence data. These studies are flawed if the DNA is isolated from misidentified modern specimens. We propose a genome-based solution. Using 4 × 4 mm
2
of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae
Pyropia perforata
,
Py. fucicola
and
Py. kanakaensis
. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19
th
and early 20
th
century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method.</description><subject>45</subject><subject>631/1647/2217</subject><subject>631/449/2491/1870</subject><subject>Algae</subject><subject>Base Sequence</subject><subject>Chromosome Mapping - methods</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Fungi</subject><subject>Genome, Mitochondrial - genetics</subject><subject>Genome, Plant - genetics</subject><subject>Genome, Plastid - genetics</subject><subject>Genomes</subject><subject>Humanities and Social Sciences</subject><subject>Mitochondria</subject><subject>Molecular Sequence Data</subject><subject>multidisciplinary</subject><subject>Nucleotide sequence</subject><subject>Plant species</subject><subject>Rhodophyta - genetics</subject><subject>Science</subject><subject>Specimen Handling - methods</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNplkcFu1DAQhiMEolXpgRdAlri0FVs8iZPYFySoSotUBEJwthxnknWV2KntrJQn4LXxastqob7Ymvn8-_f8WfYa6CXQgr8PHidaAhTPsuOcsnKVF3n-_OB8lJ2GcE_TKnPBQLzMjnLGBasYHGe_vxprRjUMC2kxRD_raDZIghqnwdieuI7EZUqFCbUZ0YZt5fvi3WQUOfukbG_UgOEd-bF2rZvWS1TnxKN2G_SBaJdkMCKZBhWiaYmyLRlNdHrtbOvTVdKjdSOGV9mLTg0BTx_3k-zX5-ufV7eru283X64-3q10SVlc5UK1oiopKFbXbcMb3TAOgF3NFBWgFYiGdQ00lQAhmpoVBWeouWaCFjWw4iT7sNOd5mbEVqONXg1y8mkIfpFOGflvx5q17N1GMspYlUMSOHsU8O5hTiOTowkah0FZdHOQUBZpyimYKqFv_0Pv3ext-p4ELjilXBRbR-c7SnsXUpjd3gxQuU1Y7hNO7JtD93vyb54JuNgBIbVsj_7gySdqfwBt07JX</recordid><startdate>20140604</startdate><enddate>20140604</enddate><creator>Hughey, Jeffery R.</creator><creator>Gabrielson, Paul W.</creator><creator>Rohmer, Laurence</creator><creator>Tortolani, Jacquie</creator><creator>Silva, Mayra</creator><creator>Miller, Kathy Ann</creator><creator>Young, Joel D.</creator><creator>Martell, Craig</creator><creator>Ruediger, Erik</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20140604</creationdate><title>Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes</title><author>Hughey, Jeffery R. ; 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Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morpho-anatomical characters, but recently systematists are using DNA sequence data. These studies are flawed if the DNA is isolated from misidentified modern specimens. We propose a genome-based solution. Using 4 × 4 mm
2
of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae
Pyropia perforata
,
Py. fucicola
and
Py. kanakaensis
. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19
th
and early 20
th
century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>24894641</pmid><doi>10.1038/srep05113</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | 45 631/1647/2217 631/449/2491/1870 Algae Base Sequence Chromosome Mapping - methods Deoxyribonucleic acid DNA Fungi Genome, Mitochondrial - genetics Genome, Plant - genetics Genome, Plastid - genetics Genomes Humanities and Social Sciences Mitochondria Molecular Sequence Data multidisciplinary Nucleotide sequence Plant species Rhodophyta - genetics Science Specimen Handling - methods |
| title | Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes |
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