PATRIC, the bacterial bioinformatics database and analysis resource

The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) (http://www.patricbrc.org). A joint effort by two of the original National Institute of Allergy and Infectious Diseases-funded BRCs, PATRIC provides researchers with an online resource tha...

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Veröffentlicht in:Nucleic acids research 2014-01, Vol.42 (Database issue), p.D581-D591
Hauptverfasser: Wattam, Alice R, Abraham, David, Dalay, Oral, Disz, Terry L, Driscoll, Timothy, Gabbard, Joseph L, Gillespie, Joseph J, Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olson, Robert, Overbeek, Ross, Pusch, Gordon D, Shukla, Maulik, Schulman, Julie, Stevens, Rick L, Sullivan, Daniel E, Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J C, Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W
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container_end_page D591
container_issue Database issue
container_start_page D581
container_title Nucleic acids research
container_volume 42
creator Wattam, Alice R
Abraham, David
Dalay, Oral
Disz, Terry L
Driscoll, Timothy
Gabbard, Joseph L
Gillespie, Joseph J
Gough, Roger
Hix, Deborah
Kenyon, Ronald
Machi, Dustin
Mao, Chunhong
Nordberg, Eric K
Olson, Robert
Overbeek, Ross
Pusch, Gordon D
Shukla, Maulik
Schulman, Julie
Stevens, Rick L
Sullivan, Daniel E
Vonstein, Veronika
Warren, Andrew
Will, Rebecca
Wilson, Meredith J C
Yoo, Hyun Seung
Zhang, Chengdong
Zhang, Yan
Sobral, Bruno W
description The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) (http://www.patricbrc.org). A joint effort by two of the original National Institute of Allergy and Infectious Diseases-funded BRCs, PATRIC provides researchers with an online resource that stores and integrates a variety of data types [e.g. genomics, transcriptomics, protein-protein interactions (PPIs), three-dimensional protein structures and sequence typing data] and associated metadata. Datatypes are summarized for individual genomes and across taxonomic levels. All genomes in PATRIC, currently more than 10,000, are consistently annotated using RAST, the Rapid Annotations using Subsystems Technology. Summaries of different data types are also provided for individual genes, where comparisons of different annotations are available, and also include available transcriptomic data. PATRIC provides a variety of ways for researchers to find data of interest and a private workspace where they can store both genomic and gene associations, and their own private data. Both private and public data can be analyzed together using a suite of tools to perform comparative genomic or transcriptomic analysis. PATRIC also includes integrated information related to disease and PPIs. All the data and integrated analysis and visualization tools are freely available. This manuscript describes updates to the PATRIC since its initial report in the 2007 NAR Database Issue.
doi_str_mv 10.1093/nar/gkt1099
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subjects Bacteria - classification
Bacteria - genetics
Bacterial Infections - microbiology
Bacterial Proteins - chemistry
Bacterial Proteins - metabolism
Bacterial Typing Techniques
Databases, Genetic
Gene Expression Profiling
Genome, Bacterial
Genomics
Humans
Internet
IV. Viruses, bacteria, protozoa and fungi
Protein Conformation
Protein Interaction Mapping
title PATRIC, the bacterial bioinformatics database and analysis resource
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