Anisotropic energy flow and allosteric ligand binding in albumin
Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy...
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description | Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy flow through the structure of bovine serum albumin and allosteric interactions between remote ligand binding sites of the protein. Ultrafast infrared spectroscopy is used to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic and anisotropic energy flow through the protein structure following input of thermal energy into the flexible ligand binding sites, without local heating of the rigid helix bundles that connect these sites. This efficient energy transport mechanism enables the allosteric propagation of binding energy through the connecting helix structures.
Protein allosteric interactions involve a transfer of structural changes to a remote site. Here, the authors study the relationship between allosteric binding and energy flow, showing how the energy transport mechanism conveys binding energy to remote sites. |
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Protein allosteric interactions involve a transfer of structural changes to a remote site. Here, the authors study the relationship between allosteric binding and energy flow, showing how the energy transport mechanism conveys binding energy to remote sites.</description><identifier>ISSN: 2041-1723</identifier><identifier>EISSN: 2041-1723</identifier><identifier>DOI: 10.1038/ncomms4100</identifier><identifier>PMID: 24445265</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>140/125 ; 631/45/535 ; 631/57/2272 ; Allosteric Site ; Animals ; Anisotropy ; Binding sites ; Cattle ; Coloring Agents - chemistry ; Coloring Agents - metabolism ; Dyes ; Fatty acids ; Humanities and Social Sciences ; Ligands ; Metalloporphyrins - metabolism ; multidisciplinary ; Propagation ; Proteins ; Science ; Science (multidisciplinary) ; Serum Albumin, Bovine - metabolism ; Solvents ; Spectrophotometry, Ultraviolet ; Spectroscopy, Fourier Transform Infrared ; Thermal energy ; Thermodynamics</subject><ispartof>Nature communications, 2014-01, Vol.5 (1), p.3100-3100, Article 3100</ispartof><rights>Springer Nature Limited 2014</rights><rights>Copyright Nature Publishing Group Jan 2014</rights><rights>2014 Macmillan Publishers Limited. All rights reserved. 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c508t-101daa17ac357c561781ae7795982a908d290d419e09ba88f59ed932c3d4c1363</citedby><cites>FETCH-LOGICAL-c508t-101daa17ac357c561781ae7795982a908d290d419e09ba88f59ed932c3d4c1363</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949117/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949117/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><linktorsrc>$$Uhttps://doi.org/10.1038/ncomms4100$$EView_record_in_Springer_Nature$$FView_record_in_$$GSpringer_Nature</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24445265$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Guifeng</creatorcontrib><creatorcontrib>Magana, Donny</creatorcontrib><creatorcontrib>Dyer, R. Brian</creatorcontrib><title>Anisotropic energy flow and allosteric ligand binding in albumin</title><title>Nature communications</title><addtitle>Nat Commun</addtitle><addtitle>Nat Commun</addtitle><description>Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy flow through the structure of bovine serum albumin and allosteric interactions between remote ligand binding sites of the protein. Ultrafast infrared spectroscopy is used to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic and anisotropic energy flow through the protein structure following input of thermal energy into the flexible ligand binding sites, without local heating of the rigid helix bundles that connect these sites. This efficient energy transport mechanism enables the allosteric propagation of binding energy through the connecting helix structures.
Protein allosteric interactions involve a transfer of structural changes to a remote site. Here, the authors study the relationship between allosteric binding and energy flow, showing how the energy transport mechanism conveys binding energy to remote sites.</description><subject>140/125</subject><subject>631/45/535</subject><subject>631/57/2272</subject><subject>Allosteric Site</subject><subject>Animals</subject><subject>Anisotropy</subject><subject>Binding sites</subject><subject>Cattle</subject><subject>Coloring Agents - chemistry</subject><subject>Coloring Agents - metabolism</subject><subject>Dyes</subject><subject>Fatty acids</subject><subject>Humanities and Social Sciences</subject><subject>Ligands</subject><subject>Metalloporphyrins - metabolism</subject><subject>multidisciplinary</subject><subject>Propagation</subject><subject>Proteins</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Serum Albumin, Bovine - metabolism</subject><subject>Solvents</subject><subject>Spectrophotometry, Ultraviolet</subject><subject>Spectroscopy, Fourier Transform Infrared</subject><subject>Thermal energy</subject><subject>Thermodynamics</subject><issn>2041-1723</issn><issn>2041-1723</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNplkU1LxDAQhoMoKroXf4AUvIiymmmSbXIRZfELFrzoOaRpWiNtsiatsv_eLOvHqrlMmPfhnRlehA4AnwEm_Nxp33WRAsYbaDfHFMZQ5GRz7b-DRjG-4PSIAE7pNtrJKaUsn7BddHnlbPR98HOrM-NMaBZZ3fr3TLkqU23rY29CklrbLDuldZV1TWZdEsuhs24fbdWqjWb0WffQ08314_RuPHu4vZ9ezcaaYd6PAUOlFBRKE1ZoNoGCgzJFIZjguRKYV7nAFQVhsCgV5zUTphIk16SiGsiE7KGLle98KDtTaeP6oFo5D7ZTYSG9svK34uyzbPybJIIKgCIZHH8aBP86mNjLzkZt2lY544coIWGY8ZwvZx39QV_8EFw6b0nhScEo8ESdrCgdfIzB1N_LAJbLbORPNgk-XF__G_1KIgGnKyAmyTUmrM38b_cB9tmY6g</recordid><startdate>20140101</startdate><enddate>20140101</enddate><creator>Li, Guifeng</creator><creator>Magana, Donny</creator><creator>Dyer, R. 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Brian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Anisotropic energy flow and allosteric ligand binding in albumin</atitle><jtitle>Nature communications</jtitle><stitle>Nat Commun</stitle><addtitle>Nat Commun</addtitle><date>2014-01-01</date><risdate>2014</risdate><volume>5</volume><issue>1</issue><spage>3100</spage><epage>3100</epage><pages>3100-3100</pages><artnum>3100</artnum><issn>2041-1723</issn><eissn>2041-1723</eissn><abstract>Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy flow through the structure of bovine serum albumin and allosteric interactions between remote ligand binding sites of the protein. Ultrafast infrared spectroscopy is used to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic and anisotropic energy flow through the protein structure following input of thermal energy into the flexible ligand binding sites, without local heating of the rigid helix bundles that connect these sites. This efficient energy transport mechanism enables the allosteric propagation of binding energy through the connecting helix structures.
Protein allosteric interactions involve a transfer of structural changes to a remote site. Here, the authors study the relationship between allosteric binding and energy flow, showing how the energy transport mechanism conveys binding energy to remote sites.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>24445265</pmid><doi>10.1038/ncomms4100</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 140/125 631/45/535 631/57/2272 Allosteric Site Animals Anisotropy Binding sites Cattle Coloring Agents - chemistry Coloring Agents - metabolism Dyes Fatty acids Humanities and Social Sciences Ligands Metalloporphyrins - metabolism multidisciplinary Propagation Proteins Science Science (multidisciplinary) Serum Albumin, Bovine - metabolism Solvents Spectrophotometry, Ultraviolet Spectroscopy, Fourier Transform Infrared Thermal energy Thermodynamics |
title | Anisotropic energy flow and allosteric ligand binding in albumin |
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