Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes
The elongating maize internode represents a useful system for following development of cell walls in vegetative cells in the Poaceae family. Elongating internodes can be divided into four developmental zones, namely the basal intercalary meristem, above which are found the elongation, transition and...
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creator | Zhang, Qisen Cheetamun, Roshan Dhugga, Kanwarpal S Rafalski, J Antoni Tingey, Scott V Shirley, Neil J Taylor, Jillian Hayes, Kevin Beatty, Mary Bacic, Antony Burton, Rachel A Fincher, Geoffrey B |
description | The elongating maize internode represents a useful system for following development of cell walls in vegetative cells in the Poaceae family. Elongating internodes can be divided into four developmental zones, namely the basal intercalary meristem, above which are found the elongation, transition and maturation zones. Cells in the basal meristem and elongation zones contain mainly primary walls, while secondary cell wall deposition accelerates in the transition zone and predominates in the maturation zone.
The major wall components cellulose, lignin and glucuronoarabinoxylan (GAX) increased without any abrupt changes across the elongation, transition and maturation zones, although GAX appeared to increase more between the elongation and transition zones. Microarray analyses show that transcript abundance of key glycosyl transferase genes known to be involved in wall synthesis or re-modelling did not match the increases in cellulose, GAX and lignin. Rather, transcript levels of many of these genes were low in the meristematic and elongation zones, quickly increased to maximal levels in the transition zone and lower sections of the maturation zone, and generally decreased in the upper maturation zone sections. Genes with transcript profiles showing this pattern included secondary cell wall CesA genes, GT43 genes, some β-expansins, UDP-Xylose synthase and UDP-Glucose pyrophosphorylase, some xyloglucan endotransglycosylases/hydrolases, genes involved in monolignol biosynthesis, and NAM and MYB transcription factor genes.
The data indicated that the enzymic products of genes involved in cell wall synthesis and modification remain active right along the maturation zone of elongating maize internodes, despite the fact that corresponding transcript levels peak earlier, near or in the transition zone. |
doi_str_mv | 10.1186/1471-2229-14-27 |
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The major wall components cellulose, lignin and glucuronoarabinoxylan (GAX) increased without any abrupt changes across the elongation, transition and maturation zones, although GAX appeared to increase more between the elongation and transition zones. Microarray analyses show that transcript abundance of key glycosyl transferase genes known to be involved in wall synthesis or re-modelling did not match the increases in cellulose, GAX and lignin. Rather, transcript levels of many of these genes were low in the meristematic and elongation zones, quickly increased to maximal levels in the transition zone and lower sections of the maturation zone, and generally decreased in the upper maturation zone sections. Genes with transcript profiles showing this pattern included secondary cell wall CesA genes, GT43 genes, some β-expansins, UDP-Xylose synthase and UDP-Glucose pyrophosphorylase, some xyloglucan endotransglycosylases/hydrolases, genes involved in monolignol biosynthesis, and NAM and MYB transcription factor genes.
The data indicated that the enzymic products of genes involved in cell wall synthesis and modification remain active right along the maturation zone of elongating maize internodes, despite the fact that corresponding transcript levels peak earlier, near or in the transition zone.</description><identifier>ISSN: 1471-2229</identifier><identifier>EISSN: 1471-2229</identifier><identifier>DOI: 10.1186/1471-2229-14-27</identifier><identifier>PMID: 24423166</identifier><language>eng</language><publisher>England: BioMed Central</publisher><subject>Biosynthesis ; Cell Wall - metabolism ; cell wall components ; cell walls ; Cellulose ; Cellulose - metabolism ; corn ; Councils ; Gene Expression Regulation, Plant ; Genes ; hydrolases ; internodes ; Lignin ; Lignin - metabolism ; meristems ; microarray technology ; Plant Proteins - metabolism ; Poaceae ; Proteins ; Regulation ; transcription (genetics) ; Transcription factors ; transcriptome ; vegetative cells ; Xylans - metabolism ; xyloglucans ; Zea mays - metabolism</subject><ispartof>BMC plant biology, 2014-01, Vol.14 (1), p.27-27, Article 27</ispartof><rights>2014 Zhang et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>Copyright © 2014 Zhang et al.; licensee BioMed Central Ltd. 2014 Zhang et al.; licensee BioMed Central Ltd.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c454t-5569e7ffd7acc6741e7d3308e20da7e6f1593342d2d79830131239e54340d3ce3</citedby><cites>FETCH-LOGICAL-c454t-5569e7ffd7acc6741e7d3308e20da7e6f1593342d2d79830131239e54340d3ce3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927872/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927872/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24423166$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Qisen</creatorcontrib><creatorcontrib>Cheetamun, Roshan</creatorcontrib><creatorcontrib>Dhugga, Kanwarpal S</creatorcontrib><creatorcontrib>Rafalski, J Antoni</creatorcontrib><creatorcontrib>Tingey, Scott V</creatorcontrib><creatorcontrib>Shirley, Neil J</creatorcontrib><creatorcontrib>Taylor, Jillian</creatorcontrib><creatorcontrib>Hayes, Kevin</creatorcontrib><creatorcontrib>Beatty, Mary</creatorcontrib><creatorcontrib>Bacic, Antony</creatorcontrib><creatorcontrib>Burton, Rachel A</creatorcontrib><creatorcontrib>Fincher, Geoffrey B</creatorcontrib><title>Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes</title><title>BMC plant biology</title><addtitle>BMC Plant Biol</addtitle><description>The elongating maize internode represents a useful system for following development of cell walls in vegetative cells in the Poaceae family. Elongating internodes can be divided into four developmental zones, namely the basal intercalary meristem, above which are found the elongation, transition and maturation zones. Cells in the basal meristem and elongation zones contain mainly primary walls, while secondary cell wall deposition accelerates in the transition zone and predominates in the maturation zone.
The major wall components cellulose, lignin and glucuronoarabinoxylan (GAX) increased without any abrupt changes across the elongation, transition and maturation zones, although GAX appeared to increase more between the elongation and transition zones. Microarray analyses show that transcript abundance of key glycosyl transferase genes known to be involved in wall synthesis or re-modelling did not match the increases in cellulose, GAX and lignin. Rather, transcript levels of many of these genes were low in the meristematic and elongation zones, quickly increased to maximal levels in the transition zone and lower sections of the maturation zone, and generally decreased in the upper maturation zone sections. Genes with transcript profiles showing this pattern included secondary cell wall CesA genes, GT43 genes, some β-expansins, UDP-Xylose synthase and UDP-Glucose pyrophosphorylase, some xyloglucan endotransglycosylases/hydrolases, genes involved in monolignol biosynthesis, and NAM and MYB transcription factor genes.
The data indicated that the enzymic products of genes involved in cell wall synthesis and modification remain active right along the maturation zone of elongating maize internodes, despite the fact that corresponding transcript levels peak earlier, near or in the transition zone.</description><subject>Biosynthesis</subject><subject>Cell Wall - metabolism</subject><subject>cell wall components</subject><subject>cell walls</subject><subject>Cellulose</subject><subject>Cellulose - metabolism</subject><subject>corn</subject><subject>Councils</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>hydrolases</subject><subject>internodes</subject><subject>Lignin</subject><subject>Lignin - metabolism</subject><subject>meristems</subject><subject>microarray technology</subject><subject>Plant Proteins - metabolism</subject><subject>Poaceae</subject><subject>Proteins</subject><subject>Regulation</subject><subject>transcription (genetics)</subject><subject>Transcription factors</subject><subject>transcriptome</subject><subject>vegetative cells</subject><subject>Xylans - metabolism</subject><subject>xyloglucans</subject><subject>Zea mays - metabolism</subject><issn>1471-2229</issn><issn>1471-2229</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFUU1P3DAUtBCoS5eee6siceES8GccX5AQAloJiUPL2XLtl8WrxA52toj-ehwtXUEvXJ6fnsfjNzMIfSX4lJC2OSNckppSqmrCayr30OFusv-mX6DPOa8xJrLl6hNaUM4pI01ziPzP0Uze9NUqGechTLnyobLQ99WTKcXGYYzZTz6GygRXTcmEbJMf50l5NqbY-R5yZfoYVhXMtRCWdjD-LxSyCVKIDvIROuhMn-HL67lE99dXvy6_17d3Nz8uL25rywWfaiEaBbLrnDTWNpITkI4x3ALFzkhoOiIUY5w66qRqGSaMUKZAcMaxYxbYEp1vecfN7wGcLZqS6fWY_GDSs47G6_c3wT_oVfyjmaKylbQQnLwSpPi4gTzpwefZERMgbrKmuBhZvlPyQygRGDetYkoU6PF_0HXcpGLhFsWEUEXXEp1tUTbFnBN0u70J1nPies5Uz5mWTtN5hW9v5e7w_yJmL9fHp3Y</recordid><startdate>20140114</startdate><enddate>20140114</enddate><creator>Zhang, Qisen</creator><creator>Cheetamun, Roshan</creator><creator>Dhugga, Kanwarpal S</creator><creator>Rafalski, J Antoni</creator><creator>Tingey, Scott V</creator><creator>Shirley, Neil J</creator><creator>Taylor, Jillian</creator><creator>Hayes, Kevin</creator><creator>Beatty, Mary</creator><creator>Bacic, Antony</creator><creator>Burton, Rachel A</creator><creator>Fincher, Geoffrey B</creator><general>BioMed Central</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope></search><sort><creationdate>20140114</creationdate><title>Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes</title><author>Zhang, Qisen ; Cheetamun, Roshan ; Dhugga, Kanwarpal S ; Rafalski, J Antoni ; Tingey, Scott V ; Shirley, Neil J ; Taylor, Jillian ; Hayes, Kevin ; Beatty, Mary ; Bacic, Antony ; Burton, Rachel A ; Fincher, Geoffrey B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c454t-5569e7ffd7acc6741e7d3308e20da7e6f1593342d2d79830131239e54340d3ce3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Biosynthesis</topic><topic>Cell Wall - metabolism</topic><topic>cell wall components</topic><topic>cell walls</topic><topic>Cellulose</topic><topic>Cellulose - metabolism</topic><topic>corn</topic><topic>Councils</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>hydrolases</topic><topic>internodes</topic><topic>Lignin</topic><topic>Lignin - metabolism</topic><topic>meristems</topic><topic>microarray technology</topic><topic>Plant Proteins - metabolism</topic><topic>Poaceae</topic><topic>Proteins</topic><topic>Regulation</topic><topic>transcription (genetics)</topic><topic>Transcription factors</topic><topic>transcriptome</topic><topic>vegetative cells</topic><topic>Xylans - metabolism</topic><topic>xyloglucans</topic><topic>Zea mays - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Qisen</creatorcontrib><creatorcontrib>Cheetamun, Roshan</creatorcontrib><creatorcontrib>Dhugga, Kanwarpal S</creatorcontrib><creatorcontrib>Rafalski, J Antoni</creatorcontrib><creatorcontrib>Tingey, Scott V</creatorcontrib><creatorcontrib>Shirley, Neil J</creatorcontrib><creatorcontrib>Taylor, Jillian</creatorcontrib><creatorcontrib>Hayes, Kevin</creatorcontrib><creatorcontrib>Beatty, Mary</creatorcontrib><creatorcontrib>Bacic, Antony</creatorcontrib><creatorcontrib>Burton, Rachel A</creatorcontrib><creatorcontrib>Fincher, Geoffrey B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>BMC plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Qisen</au><au>Cheetamun, Roshan</au><au>Dhugga, Kanwarpal S</au><au>Rafalski, J Antoni</au><au>Tingey, Scott V</au><au>Shirley, Neil J</au><au>Taylor, Jillian</au><au>Hayes, Kevin</au><au>Beatty, Mary</au><au>Bacic, Antony</au><au>Burton, Rachel A</au><au>Fincher, Geoffrey B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes</atitle><jtitle>BMC plant biology</jtitle><addtitle>BMC Plant Biol</addtitle><date>2014-01-14</date><risdate>2014</risdate><volume>14</volume><issue>1</issue><spage>27</spage><epage>27</epage><pages>27-27</pages><artnum>27</artnum><issn>1471-2229</issn><eissn>1471-2229</eissn><abstract>The elongating maize internode represents a useful system for following development of cell walls in vegetative cells in the Poaceae family. Elongating internodes can be divided into four developmental zones, namely the basal intercalary meristem, above which are found the elongation, transition and maturation zones. Cells in the basal meristem and elongation zones contain mainly primary walls, while secondary cell wall deposition accelerates in the transition zone and predominates in the maturation zone.
The major wall components cellulose, lignin and glucuronoarabinoxylan (GAX) increased without any abrupt changes across the elongation, transition and maturation zones, although GAX appeared to increase more between the elongation and transition zones. Microarray analyses show that transcript abundance of key glycosyl transferase genes known to be involved in wall synthesis or re-modelling did not match the increases in cellulose, GAX and lignin. Rather, transcript levels of many of these genes were low in the meristematic and elongation zones, quickly increased to maximal levels in the transition zone and lower sections of the maturation zone, and generally decreased in the upper maturation zone sections. Genes with transcript profiles showing this pattern included secondary cell wall CesA genes, GT43 genes, some β-expansins, UDP-Xylose synthase and UDP-Glucose pyrophosphorylase, some xyloglucan endotransglycosylases/hydrolases, genes involved in monolignol biosynthesis, and NAM and MYB transcription factor genes.
The data indicated that the enzymic products of genes involved in cell wall synthesis and modification remain active right along the maturation zone of elongating maize internodes, despite the fact that corresponding transcript levels peak earlier, near or in the transition zone.</abstract><cop>England</cop><pub>BioMed Central</pub><pmid>24423166</pmid><doi>10.1186/1471-2229-14-27</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Biosynthesis Cell Wall - metabolism cell wall components cell walls Cellulose Cellulose - metabolism corn Councils Gene Expression Regulation, Plant Genes hydrolases internodes Lignin Lignin - metabolism meristems microarray technology Plant Proteins - metabolism Poaceae Proteins Regulation transcription (genetics) Transcription factors transcriptome vegetative cells Xylans - metabolism xyloglucans Zea mays - metabolism |
title | Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes |
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