Incidence and characterization of Potato virus V infections in Iran
A survey was carried out to determine the extent of Potato virus V (PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infec...
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| Veröffentlicht in: | VirusDisease 2014, Vol.25 (1), p.78-84 |
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| creator | Shamsadden-Saeed, Fatemeh Massumi, Hossain Moradi, Sakineh Maddahian, Mohammad Heydarnejad, Jahangir Pour, Akbar Hosseini Varsani, Arvind |
| description | A survey was carried out to determine the extent of
Potato virus V
(PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infection up to ~32.9 %. We determined the genomic sequence 9,812 nucleotides of one isolate (KER.LAL.P) from cultivar Agria and the 3′-terminal sequence including coat protein (CP) gene of four additional isolates from cultivar Zardi. The Iranian isolate PVV KER.LAL.P was found to share 91 % sequence identity with the Scottish isolate DV-42 (AJ243766) of PVV. The CP gene sequences of the PVV isolates from Iran shared 96.5 to 99.3 % pairwise nucleotide identity and they shared |
| doi_str_mv | 10.1007/s13337-013-0178-4 |
| format | Article |
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Potato virus V
(PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infection up to ~32.9 %. We determined the genomic sequence 9,812 nucleotides of one isolate (KER.LAL.P) from cultivar Agria and the 3′-terminal sequence including coat protein (CP) gene of four additional isolates from cultivar Zardi. The Iranian isolate PVV KER.LAL.P was found to share 91 % sequence identity with the Scottish isolate DV-42 (AJ243766) of PVV. The CP gene sequences of the PVV isolates from Iran shared 96.5 to 99.3 % pairwise nucleotide identity and they shared <97.5 % pairwise identity with the CP sequences of all other PVV isolates available in public databases. Our host studies indicated that the Iranian PVV isolate had a narrower host range and infected
Nicotiana debneyi
and
N. glutinosa
test plants. Within the commercial varieties of potato in Iran, we noted a significant amount of mixed potyvirus infection. This study is the first report of occurrence and complete genome of PVV in Iran.</description><identifier>ISSN: 2347-3584</identifier><identifier>EISSN: 2347-3517</identifier><identifier>DOI: 10.1007/s13337-013-0178-4</identifier><identifier>PMID: 24426313</identifier><language>eng</language><publisher>New Delhi: Springer India</publisher><subject>Amino acid sequence ; Biochemistry ; Biomedical and Life Sciences ; Cell Biology ; Cloning ; Coat protein ; Comparative analysis ; CP gene ; Cultivars ; Enzymes ; Genes ; Genomes ; Genomics ; Health aspects ; Host range ; Infection ; Life Sciences ; Microbiology ; Nucleotide sequence ; Original ; Original Article ; Plant virus diseases ; Plant viruses ; Polyclonal antibodies ; Potatoes ; Protein Structure ; Proteins ; Provinces ; Surveys ; Viruses</subject><ispartof>VirusDisease, 2014, Vol.25 (1), p.78-84</ispartof><rights>Indian Virological Society 2013</rights><rights>COPYRIGHT 2014 Springer</rights><rights>Indian Virological Society 2013.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5224-d75ae50ff578d139bc4c6124f3637c7b0b35f25cab6f45f91e4ba015c69d3b5d3</citedby><cites>FETCH-LOGICAL-c5224-d75ae50ff578d139bc4c6124f3637c7b0b35f25cab6f45f91e4ba015c69d3b5d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889240/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2919677170?pq-origsite=primo$$EHTML$$P50$$Gproquest$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,21387,21388,27923,27924,33529,33530,33743,33744,41487,42556,43658,43804,51318,53790,53792,64384,64386,64388,72340</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24426313$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shamsadden-Saeed, Fatemeh</creatorcontrib><creatorcontrib>Massumi, Hossain</creatorcontrib><creatorcontrib>Moradi, Sakineh</creatorcontrib><creatorcontrib>Maddahian, Mohammad</creatorcontrib><creatorcontrib>Heydarnejad, Jahangir</creatorcontrib><creatorcontrib>Pour, Akbar Hosseini</creatorcontrib><creatorcontrib>Varsani, Arvind</creatorcontrib><title>Incidence and characterization of Potato virus V infections in Iran</title><title>VirusDisease</title><addtitle>VirusDis</addtitle><addtitle>Virusdisease</addtitle><description>A survey was carried out to determine the extent of
Potato virus V
(PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infection up to ~32.9 %. We determined the genomic sequence 9,812 nucleotides of one isolate (KER.LAL.P) from cultivar Agria and the 3′-terminal sequence including coat protein (CP) gene of four additional isolates from cultivar Zardi. The Iranian isolate PVV KER.LAL.P was found to share 91 % sequence identity with the Scottish isolate DV-42 (AJ243766) of PVV. The CP gene sequences of the PVV isolates from Iran shared 96.5 to 99.3 % pairwise nucleotide identity and they shared <97.5 % pairwise identity with the CP sequences of all other PVV isolates available in public databases. Our host studies indicated that the Iranian PVV isolate had a narrower host range and infected
Nicotiana debneyi
and
N. glutinosa
test plants. Within the commercial varieties of potato in Iran, we noted a significant amount of mixed potyvirus infection. This study is the first report of occurrence and complete genome of PVV in Iran.</description><subject>Amino acid sequence</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Cloning</subject><subject>Coat protein</subject><subject>Comparative analysis</subject><subject>CP gene</subject><subject>Cultivars</subject><subject>Enzymes</subject><subject>Genes</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Health aspects</subject><subject>Host range</subject><subject>Infection</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>Nucleotide sequence</subject><subject>Original</subject><subject>Original Article</subject><subject>Plant virus diseases</subject><subject>Plant viruses</subject><subject>Polyclonal antibodies</subject><subject>Potatoes</subject><subject>Protein Structure</subject><subject>Proteins</subject><subject>Provinces</subject><subject>Surveys</subject><subject>Viruses</subject><issn>2347-3584</issn><issn>2347-3517</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1UUtr3DAQFiWlCWl-QC_F0EsuTjR6eOxLICxNshBoD22vQpaljYJXSiU70P76anGyTQpFCA36HprRR8gHoGdAKZ5n4JxjTYGXjW0t3pAjxgXWXAIe7OtWHJKTnO8ppQAoRNO9I4dMCNZw4EdktQ7GDzYYW-kwVOZOJ20mm_xvPfkYquiqr3HSU6wefZpz9aPywVmzw3Ipq3XS4T156_SY7cnTeUy-X33-trqpb79cr1eXt7WRjIl6QKmtpM5JbAfgXW-EaYAJxxuOBnvac-mYNLpvnJCuAyt6TUGapht4Lwd-TC4W34e539rB2DAlPaqH5Lc6_VJRe_UaCf5ObeKj4m3bMUGLwemTQYo_Z5sntfXZ2HHUwcY5KxAdRRSStoX66R_qfZxTKOMp1kHXIALuDM8W1kaPVpWfieVdU9Zgt97EYJ0v95cI0KBsEYsAFoFJMedk3b57oGoXq1piVSVWtYtViaL5-HLsveI5xEJgCyEXKGxs-tvr_13_AGt3rFY</recordid><startdate>2014</startdate><enddate>2014</enddate><creator>Shamsadden-Saeed, Fatemeh</creator><creator>Massumi, Hossain</creator><creator>Moradi, Sakineh</creator><creator>Maddahian, Mohammad</creator><creator>Heydarnejad, Jahangir</creator><creator>Pour, Akbar Hosseini</creator><creator>Varsani, Arvind</creator><general>Springer India</general><general>Springer</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IAO</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8C1</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>2014</creationdate><title>Incidence and characterization of Potato virus V infections in Iran</title><author>Shamsadden-Saeed, Fatemeh ; Massumi, Hossain ; Moradi, Sakineh ; Maddahian, Mohammad ; Heydarnejad, Jahangir ; Pour, Akbar Hosseini ; Varsani, Arvind</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5224-d75ae50ff578d139bc4c6124f3637c7b0b35f25cab6f45f91e4ba015c69d3b5d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amino acid sequence</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Cloning</topic><topic>Coat protein</topic><topic>Comparative analysis</topic><topic>CP gene</topic><topic>Cultivars</topic><topic>Enzymes</topic><topic>Genes</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Health aspects</topic><topic>Host range</topic><topic>Infection</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>Nucleotide sequence</topic><topic>Original</topic><topic>Original Article</topic><topic>Plant virus diseases</topic><topic>Plant viruses</topic><topic>Polyclonal antibodies</topic><topic>Potatoes</topic><topic>Protein Structure</topic><topic>Proteins</topic><topic>Provinces</topic><topic>Surveys</topic><topic>Viruses</topic><toplevel>online_resources</toplevel><creatorcontrib>Shamsadden-Saeed, Fatemeh</creatorcontrib><creatorcontrib>Massumi, Hossain</creatorcontrib><creatorcontrib>Moradi, Sakineh</creatorcontrib><creatorcontrib>Maddahian, Mohammad</creatorcontrib><creatorcontrib>Heydarnejad, Jahangir</creatorcontrib><creatorcontrib>Pour, Akbar Hosseini</creatorcontrib><creatorcontrib>Varsani, Arvind</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale Academic OneFile</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Public Health Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>VirusDisease</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shamsadden-Saeed, Fatemeh</au><au>Massumi, Hossain</au><au>Moradi, Sakineh</au><au>Maddahian, Mohammad</au><au>Heydarnejad, Jahangir</au><au>Pour, Akbar Hosseini</au><au>Varsani, Arvind</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Incidence and characterization of Potato virus V infections in Iran</atitle><jtitle>VirusDisease</jtitle><stitle>VirusDis</stitle><addtitle>Virusdisease</addtitle><date>2014</date><risdate>2014</risdate><volume>25</volume><issue>1</issue><spage>78</spage><epage>84</epage><pages>78-84</pages><issn>2347-3584</issn><eissn>2347-3517</eissn><abstract>A survey was carried out to determine the extent of
Potato virus V
(PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infection up to ~32.9 %. We determined the genomic sequence 9,812 nucleotides of one isolate (KER.LAL.P) from cultivar Agria and the 3′-terminal sequence including coat protein (CP) gene of four additional isolates from cultivar Zardi. The Iranian isolate PVV KER.LAL.P was found to share 91 % sequence identity with the Scottish isolate DV-42 (AJ243766) of PVV. The CP gene sequences of the PVV isolates from Iran shared 96.5 to 99.3 % pairwise nucleotide identity and they shared <97.5 % pairwise identity with the CP sequences of all other PVV isolates available in public databases. Our host studies indicated that the Iranian PVV isolate had a narrower host range and infected
Nicotiana debneyi
and
N. glutinosa
test plants. Within the commercial varieties of potato in Iran, we noted a significant amount of mixed potyvirus infection. This study is the first report of occurrence and complete genome of PVV in Iran.</abstract><cop>New Delhi</cop><pub>Springer India</pub><pmid>24426313</pmid><doi>10.1007/s13337-013-0178-4</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Amino acid sequence Biochemistry Biomedical and Life Sciences Cell Biology Cloning Coat protein Comparative analysis CP gene Cultivars Enzymes Genes Genomes Genomics Health aspects Host range Infection Life Sciences Microbiology Nucleotide sequence Original Original Article Plant virus diseases Plant viruses Polyclonal antibodies Potatoes Protein Structure Proteins Provinces Surveys Viruses |
| title | Incidence and characterization of Potato virus V infections in Iran |
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