Three-dimensional reconstruction of brain structures of the rodent Octodon degus: a brain atlas constructed by combining histological and magnetic resonance images
Degus ( Octodon degus ) are rodents that are becoming more widely used in the neuroscience field. Degus display several more complex behaviors than rats and mice, including complicated social behaviors, vocal communications, and tool usage with superb manual dexterity. However, relatively little inf...
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| Veröffentlicht in: | Experimental brain research 2013-11, Vol.231 (1), p.65-74 |
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| creator | Kumazawa-Manita, Noriko Katayama, Mariko Hashikawa, Tsutomu Iriki, Atsushi |
| description | Degus (
Octodon degus
) are rodents that are becoming more widely used in the neuroscience field. Degus display several more complex behaviors than rats and mice, including complicated social behaviors, vocal communications, and tool usage with superb manual dexterity. However, relatively little information is known about the anatomy of degu brains. Therefore, for these complex behaviors to be correlated with specific brain regions, a contemporary atlas of the degu brain is required. This manuscript describes the construction of a three-dimensional (3D) volume rendered model of the degu brain that combines histological and magnetic resonance images. This atlas provides several advantages, including the ability to visualize the surface of the brain from any angle. The atlas also permits virtual cutting of brain sections in any plane and provides stereotaxic coordinates for all sections, to be beneficial for both experimental surgeries and radiological studies. The reconstructed 3D atlas is freely available online at:
http://brainatlas.brain.riken.jp/degu/modules/xoonips/listitem.php?index_id=24
. |
| doi_str_mv | 10.1007/s00221-013-3667-1 |
| format | Article |
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Octodon degus
) are rodents that are becoming more widely used in the neuroscience field. Degus display several more complex behaviors than rats and mice, including complicated social behaviors, vocal communications, and tool usage with superb manual dexterity. However, relatively little information is known about the anatomy of degu brains. Therefore, for these complex behaviors to be correlated with specific brain regions, a contemporary atlas of the degu brain is required. This manuscript describes the construction of a three-dimensional (3D) volume rendered model of the degu brain that combines histological and magnetic resonance images. This atlas provides several advantages, including the ability to visualize the surface of the brain from any angle. The atlas also permits virtual cutting of brain sections in any plane and provides stereotaxic coordinates for all sections, to be beneficial for both experimental surgeries and radiological studies. The reconstructed 3D atlas is freely available online at:
http://brainatlas.brain.riken.jp/degu/modules/xoonips/listitem.php?index_id=24
.</description><identifier>ISSN: 0014-4819</identifier><identifier>EISSN: 1432-1106</identifier><identifier>DOI: 10.1007/s00221-013-3667-1</identifier><identifier>PMID: 23995563</identifier><identifier>CODEN: EXBRAP</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Alzheimer's disease ; Animal cognition ; Animals ; Atlases as Topic ; Behavior ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Brain - anatomy & histology ; Brain Mapping ; Brain research ; Cognitive development ; Coloring Agents ; Degu ; Fundamental and applied biological sciences. Psychology ; Health aspects ; Image Processing, Computer-Assisted - methods ; Imaging, Three-Dimensional ; Laboratory animals ; Magnetic resonance imaging ; Magnetic Resonance Imaging - methods ; Neurology ; Neurosciences ; Neurosurgery ; Octodon - anatomy & histology ; Octodon degus ; Reference Standards ; Research Article ; Rodents ; Software ; Stereotaxic Techniques ; Vertebrates: nervous system and sense organs</subject><ispartof>Experimental brain research, 2013-11, Vol.231 (1), p.65-74</ispartof><rights>The Author(s) 2013</rights><rights>2014 INIST-CNRS</rights><rights>COPYRIGHT 2013 Springer</rights><rights>Springer-Verlag Berlin Heidelberg 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c665t-3676497f560b24869873eefff98e69dc6e28f7f5efabc28e8533831c07fec8793</citedby><cites>FETCH-LOGICAL-c665t-3676497f560b24869873eefff98e69dc6e28f7f5efabc28e8533831c07fec8793</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00221-013-3667-1$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00221-013-3667-1$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=27823478$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23995563$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kumazawa-Manita, Noriko</creatorcontrib><creatorcontrib>Katayama, Mariko</creatorcontrib><creatorcontrib>Hashikawa, Tsutomu</creatorcontrib><creatorcontrib>Iriki, Atsushi</creatorcontrib><title>Three-dimensional reconstruction of brain structures of the rodent Octodon degus: a brain atlas constructed by combining histological and magnetic resonance images</title><title>Experimental brain research</title><addtitle>Exp Brain Res</addtitle><addtitle>Exp Brain Res</addtitle><description>Degus (
Octodon degus
) are rodents that are becoming more widely used in the neuroscience field. Degus display several more complex behaviors than rats and mice, including complicated social behaviors, vocal communications, and tool usage with superb manual dexterity. However, relatively little information is known about the anatomy of degu brains. Therefore, for these complex behaviors to be correlated with specific brain regions, a contemporary atlas of the degu brain is required. This manuscript describes the construction of a three-dimensional (3D) volume rendered model of the degu brain that combines histological and magnetic resonance images. This atlas provides several advantages, including the ability to visualize the surface of the brain from any angle. The atlas also permits virtual cutting of brain sections in any plane and provides stereotaxic coordinates for all sections, to be beneficial for both experimental surgeries and radiological studies. The reconstructed 3D atlas is freely available online at:
http://brainatlas.brain.riken.jp/degu/modules/xoonips/listitem.php?index_id=24
.</description><subject>Alzheimer's disease</subject><subject>Animal cognition</subject><subject>Animals</subject><subject>Atlases as Topic</subject><subject>Behavior</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brain - anatomy & histology</subject><subject>Brain Mapping</subject><subject>Brain research</subject><subject>Cognitive development</subject><subject>Coloring Agents</subject><subject>Degu</subject><subject>Fundamental and applied biological sciences. 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Psychology</topic><topic>Health aspects</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Imaging, Three-Dimensional</topic><topic>Laboratory animals</topic><topic>Magnetic resonance imaging</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Neurology</topic><topic>Neurosciences</topic><topic>Neurosurgery</topic><topic>Octodon - anatomy & histology</topic><topic>Octodon degus</topic><topic>Reference Standards</topic><topic>Research Article</topic><topic>Rodents</topic><topic>Software</topic><topic>Stereotaxic Techniques</topic><topic>Vertebrates: nervous system and sense organs</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kumazawa-Manita, Noriko</creatorcontrib><creatorcontrib>Katayama, Mariko</creatorcontrib><creatorcontrib>Hashikawa, Tsutomu</creatorcontrib><creatorcontrib>Iriki, Atsushi</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Social Sciences Premium Collection【Remote access available】</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Nursing & Allied Health Database (ProQuest)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection (Proquest)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Psychology Database (Alumni)</collection><collection>Social Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Social Science Premium Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Psychology Database (ProQuest)</collection><collection>Social Science Database (ProQuest)</collection><collection>Nursing & Allied Health Premium</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest One Psychology</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Experimental brain research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kumazawa-Manita, Noriko</au><au>Katayama, Mariko</au><au>Hashikawa, Tsutomu</au><au>Iriki, Atsushi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Three-dimensional reconstruction of brain structures of the rodent Octodon degus: a brain atlas constructed by combining histological and magnetic resonance images</atitle><jtitle>Experimental brain research</jtitle><stitle>Exp Brain Res</stitle><addtitle>Exp Brain Res</addtitle><date>2013-11-01</date><risdate>2013</risdate><volume>231</volume><issue>1</issue><spage>65</spage><epage>74</epage><pages>65-74</pages><issn>0014-4819</issn><eissn>1432-1106</eissn><coden>EXBRAP</coden><abstract>Degus (
Octodon degus
) are rodents that are becoming more widely used in the neuroscience field. Degus display several more complex behaviors than rats and mice, including complicated social behaviors, vocal communications, and tool usage with superb manual dexterity. However, relatively little information is known about the anatomy of degu brains. Therefore, for these complex behaviors to be correlated with specific brain regions, a contemporary atlas of the degu brain is required. This manuscript describes the construction of a three-dimensional (3D) volume rendered model of the degu brain that combines histological and magnetic resonance images. This atlas provides several advantages, including the ability to visualize the surface of the brain from any angle. The atlas also permits virtual cutting of brain sections in any plane and provides stereotaxic coordinates for all sections, to be beneficial for both experimental surgeries and radiological studies. The reconstructed 3D atlas is freely available online at:
http://brainatlas.brain.riken.jp/degu/modules/xoonips/listitem.php?index_id=24
.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>23995563</pmid><doi>10.1007/s00221-013-3667-1</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Experimental brain research, 2013-11, Vol.231 (1), p.65-74 |
| issn | 0014-4819 1432-1106 |
| language | eng |
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| source | MEDLINE; SpringerLink Journals |
| subjects | Alzheimer's disease Animal cognition Animals Atlases as Topic Behavior Biological and medical sciences Biomedical and Life Sciences Biomedicine Brain - anatomy & histology Brain Mapping Brain research Cognitive development Coloring Agents Degu Fundamental and applied biological sciences. Psychology Health aspects Image Processing, Computer-Assisted - methods Imaging, Three-Dimensional Laboratory animals Magnetic resonance imaging Magnetic Resonance Imaging - methods Neurology Neurosciences Neurosurgery Octodon - anatomy & histology Octodon degus Reference Standards Research Article Rodents Software Stereotaxic Techniques Vertebrates: nervous system and sense organs |
| title | Three-dimensional reconstruction of brain structures of the rodent Octodon degus: a brain atlas constructed by combining histological and magnetic resonance images |
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