Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data
We conducted controlled crosses in populations of the long-lived clonal shrub, Vaccinium angustifolium (lowbush blueberry) to estimate inbreeding depression and mutation parameters associated with somatic deleterious mutation. Inbreeding depression level was high, with many plants failing to set fru...
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description | We conducted controlled crosses in populations of the long-lived clonal shrub, Vaccinium angustifolium (lowbush blueberry) to estimate inbreeding depression and mutation parameters associated with somatic deleterious mutation. Inbreeding depression level was high, with many plants failing to set fruit after self-pollination. We also compared fruit set from autogamous pollinations (pollen collected from within the same inflorescence) with fruit set from geitonogamous pollinations (pollen collected from the same plant but from inflorescences separated by several meters of branch growth). The difference between geitonogamous versus autogamous fitness within single plants is referred to as 'autogamy depression' (AD). AD can be caused by somatic deleterious mutation. AD was significantly different from zero for fruit set. We developed a maximum-likelihood procedure to estimate somatic mutation parameters from AD, and applied it to geitonogamous and autogamous fruit set data from this experiment. We infer that, on average, approximately three sublethal, partially dominant somatic mutations exist within the crowns of the plants studied. We conclude that somatic mutation in this woody plant results in an overall genomic deleterious mutation rate that exceeds the rate measured to date for annual plants. Some implications of this result for evolutionary biology and agriculture are discussed. |
doi_str_mv | 10.1038/hdy.2013.57 |
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Inbreeding depression level was high, with many plants failing to set fruit after self-pollination. We also compared fruit set from autogamous pollinations (pollen collected from within the same inflorescence) with fruit set from geitonogamous pollinations (pollen collected from the same plant but from inflorescences separated by several meters of branch growth). The difference between geitonogamous versus autogamous fitness within single plants is referred to as 'autogamy depression' (AD). AD can be caused by somatic deleterious mutation. AD was significantly different from zero for fruit set. We developed a maximum-likelihood procedure to estimate somatic mutation parameters from AD, and applied it to geitonogamous and autogamous fruit set data from this experiment. We infer that, on average, approximately three sublethal, partially dominant somatic mutations exist within the crowns of the plants studied. We conclude that somatic mutation in this woody plant results in an overall genomic deleterious mutation rate that exceeds the rate measured to date for annual plants. Some implications of this result for evolutionary biology and agriculture are discussed.</description><identifier>ISSN: 0018-067X</identifier><identifier>EISSN: 1365-2540</identifier><identifier>DOI: 10.1038/hdy.2013.57</identifier><identifier>PMID: 23778990</identifier><identifier>CODEN: HDTYAT</identifier><language>eng</language><publisher>England: Springer Nature B.V</publisher><subject>Agriculture ; Biological Evolution ; Blueberry Plants - genetics ; Crosses, Genetic ; Flowers - genetics ; Fruit - genetics ; Fruits ; Genetic Fitness ; Genotype & phenotype ; Inbreeding ; Mutation ; Mutation Rate ; Original ; Phenotype ; Plant populations ; Pollen ; Pollination ; Regression Analysis ; Reproduction - genetics ; Self-fertilization ; Sequence Deletion - genetics ; Vaccinium angustifolium ; Woody plants</subject><ispartof>Heredity, 2013-10, Vol.111 (4), p.338-344</ispartof><rights>Copyright Nature Publishing Group Oct 2013</rights><rights>Copyright © 2013 The Genetics Society 2013 The Genetics Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c442t-81d74980d7dfb123f3f2079e433cde7bbe58614cac08d3998c8ebb95914937543</citedby><cites>FETCH-LOGICAL-c442t-81d74980d7dfb123f3f2079e433cde7bbe58614cac08d3998c8ebb95914937543</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3807267/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3807267/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,724,777,781,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23778990$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bobiwash, K</creatorcontrib><creatorcontrib>Schultz, S T</creatorcontrib><creatorcontrib>Schoen, D J</creatorcontrib><title>Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data</title><title>Heredity</title><addtitle>Heredity (Edinb)</addtitle><description>We conducted controlled crosses in populations of the long-lived clonal shrub, Vaccinium angustifolium (lowbush blueberry) to estimate inbreeding depression and mutation parameters associated with somatic deleterious mutation. Inbreeding depression level was high, with many plants failing to set fruit after self-pollination. We also compared fruit set from autogamous pollinations (pollen collected from within the same inflorescence) with fruit set from geitonogamous pollinations (pollen collected from the same plant but from inflorescences separated by several meters of branch growth). The difference between geitonogamous versus autogamous fitness within single plants is referred to as 'autogamy depression' (AD). AD can be caused by somatic deleterious mutation. AD was significantly different from zero for fruit set. We developed a maximum-likelihood procedure to estimate somatic mutation parameters from AD, and applied it to geitonogamous and autogamous fruit set data from this experiment. We infer that, on average, approximately three sublethal, partially dominant somatic mutations exist within the crowns of the plants studied. We conclude that somatic mutation in this woody plant results in an overall genomic deleterious mutation rate that exceeds the rate measured to date for annual plants. Some implications of this result for evolutionary biology and agriculture are discussed.</description><subject>Agriculture</subject><subject>Biological Evolution</subject><subject>Blueberry Plants - genetics</subject><subject>Crosses, Genetic</subject><subject>Flowers - genetics</subject><subject>Fruit - genetics</subject><subject>Fruits</subject><subject>Genetic Fitness</subject><subject>Genotype & phenotype</subject><subject>Inbreeding</subject><subject>Mutation</subject><subject>Mutation Rate</subject><subject>Original</subject><subject>Phenotype</subject><subject>Plant populations</subject><subject>Pollen</subject><subject>Pollination</subject><subject>Regression Analysis</subject><subject>Reproduction - genetics</subject><subject>Self-fertilization</subject><subject>Sequence Deletion - genetics</subject><subject>Vaccinium angustifolium</subject><subject>Woody plants</subject><issn>0018-067X</issn><issn>1365-2540</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpdkUFrFTEUhYMo9rW6ci8BN4LM601u5iVxIUixKhRctIK7kEkyvikzkzGTUd6_N8OrxXYVuPk495x7CHnFYMsA1fneH7YcGG5r-YRsGO7qitcCnpINAFMV7OSPE3I6z7cAgJLr5-SEo5RKa9iQ6-s42Nw56kMfckhdXGY6LLnM4kiTzYF2I7X0T4z-QKfejvk9DXPuhiPRpjjQaR_GmA_TKmOzfUGetbafw8u794x8v_x0c_Gluvr2-evFx6vKCcFzpZiXQivw0rcN49hiy0HqIBCdD7JpQq12TDjrQHnUWjkVmkbXmgmNshZ4Rj4cdaelGYJ3YczJ9mZKxVw6mGg78_Bn7PbmZ_xtUIHkO1kE3t4JpPhrKanM0M0u9CVlKHcwTKDmKISEgr55hN7GJY0l3kohgpCCF-rdkXIpznMK7b0ZBmYty5SyzFqWqdf1r__3f8_-awf_ArCxkOM</recordid><startdate>20131001</startdate><enddate>20131001</enddate><creator>Bobiwash, K</creator><creator>Schultz, S T</creator><creator>Schoen, D J</creator><general>Springer Nature B.V</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>20131001</creationdate><title>Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data</title><author>Bobiwash, K ; Schultz, S T ; Schoen, D J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c442t-81d74980d7dfb123f3f2079e433cde7bbe58614cac08d3998c8ebb95914937543</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Agriculture</topic><topic>Biological Evolution</topic><topic>Blueberry Plants - genetics</topic><topic>Crosses, Genetic</topic><topic>Flowers - genetics</topic><topic>Fruit - genetics</topic><topic>Fruits</topic><topic>Genetic Fitness</topic><topic>Genotype & phenotype</topic><topic>Inbreeding</topic><topic>Mutation</topic><topic>Mutation Rate</topic><topic>Original</topic><topic>Phenotype</topic><topic>Plant populations</topic><topic>Pollen</topic><topic>Pollination</topic><topic>Regression Analysis</topic><topic>Reproduction - genetics</topic><topic>Self-fertilization</topic><topic>Sequence Deletion - genetics</topic><topic>Vaccinium angustifolium</topic><topic>Woody plants</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bobiwash, K</creatorcontrib><creatorcontrib>Schultz, S T</creatorcontrib><creatorcontrib>Schoen, D J</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Heredity</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bobiwash, K</au><au>Schultz, S T</au><au>Schoen, D J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data</atitle><jtitle>Heredity</jtitle><addtitle>Heredity (Edinb)</addtitle><date>2013-10-01</date><risdate>2013</risdate><volume>111</volume><issue>4</issue><spage>338</spage><epage>344</epage><pages>338-344</pages><issn>0018-067X</issn><eissn>1365-2540</eissn><coden>HDTYAT</coden><abstract>We conducted controlled crosses in populations of the long-lived clonal shrub, Vaccinium angustifolium (lowbush blueberry) to estimate inbreeding depression and mutation parameters associated with somatic deleterious mutation. Inbreeding depression level was high, with many plants failing to set fruit after self-pollination. We also compared fruit set from autogamous pollinations (pollen collected from within the same inflorescence) with fruit set from geitonogamous pollinations (pollen collected from the same plant but from inflorescences separated by several meters of branch growth). The difference between geitonogamous versus autogamous fitness within single plants is referred to as 'autogamy depression' (AD). AD can be caused by somatic deleterious mutation. AD was significantly different from zero for fruit set. We developed a maximum-likelihood procedure to estimate somatic mutation parameters from AD, and applied it to geitonogamous and autogamous fruit set data from this experiment. We infer that, on average, approximately three sublethal, partially dominant somatic mutations exist within the crowns of the plants studied. We conclude that somatic mutation in this woody plant results in an overall genomic deleterious mutation rate that exceeds the rate measured to date for annual plants. Some implications of this result for evolutionary biology and agriculture are discussed.</abstract><cop>England</cop><pub>Springer Nature B.V</pub><pmid>23778990</pmid><doi>10.1038/hdy.2013.57</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Agriculture Biological Evolution Blueberry Plants - genetics Crosses, Genetic Flowers - genetics Fruit - genetics Fruits Genetic Fitness Genotype & phenotype Inbreeding Mutation Mutation Rate Original Phenotype Plant populations Pollen Pollination Regression Analysis Reproduction - genetics Self-fertilization Sequence Deletion - genetics Vaccinium angustifolium Woody plants |
title | Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data |
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