Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients

Recent meta-analyses of genome-wide association studies in general populations of European descent have identified 28 loci for lung function. We sought to identify novel lung function loci specifically for asthma and to confirm lung function loci identified in general populations. Genome-wide associ...

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Veröffentlicht in:Journal of allergy and clinical immunology 2013-08, Vol.132 (2), p.313-320.e15
Hauptverfasser: Li, Xingnan, Hawkins, Gregory A., Ampleford, Elizabeth J., Moore, Wendy C., Li, Huashi, Hastie, Annette T., Howard, Timothy D., Boushey, Homer A., Busse, William W., Calhoun, William J., Castro, Mario, Erzurum, Serpil C., Israel, Elliot, Lemanske, Robert F., Szefler, Stanley J., Wasserman, Stephen I., Wenzel, Sally E., Peters, Stephen P., Meyers, Deborah A., Bleecker, Eugene R.
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container_end_page 320.e15
container_issue 2
container_start_page 313
container_title Journal of allergy and clinical immunology
container_volume 132
creator Li, Xingnan
Hawkins, Gregory A.
Ampleford, Elizabeth J.
Moore, Wendy C.
Li, Huashi
Hastie, Annette T.
Howard, Timothy D.
Boushey, Homer A.
Busse, William W.
Calhoun, William J.
Castro, Mario
Erzurum, Serpil C.
Israel, Elliot
Lemanske, Robert F.
Szefler, Stanley J.
Wasserman, Stephen I.
Wenzel, Sally E.
Peters, Stephen P.
Meyers, Deborah A.
Bleecker, Eugene R.
description Recent meta-analyses of genome-wide association studies in general populations of European descent have identified 28 loci for lung function. We sought to identify novel lung function loci specifically for asthma and to confirm lung function loci identified in general populations. Genome-wide association studies of lung function (percent predicted FEV1 [ppFEV1], percent predicted forced vital capacity, and FEV1/forced vital capacity ratio) were performed in 4 white populations of European descent (n = 1544), followed by meta-analyses. Seven of 28 previously identified lung function loci (HHIP, FAM13A, THSD4, GSTCD, NOTCH4-AGER, RARB, and ZNF323) identified in general populations were confirmed at single nucleotide polymorphism (SNP) levels (P 
doi_str_mv 10.1016/j.jaci.2013.01.051
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We sought to identify novel lung function loci specifically for asthma and to confirm lung function loci identified in general populations. Genome-wide association studies of lung function (percent predicted FEV1 [ppFEV1], percent predicted forced vital capacity, and FEV1/forced vital capacity ratio) were performed in 4 white populations of European descent (n = 1544), followed by meta-analyses. Seven of 28 previously identified lung function loci (HHIP, FAM13A, THSD4, GSTCD, NOTCH4-AGER, RARB, and ZNF323) identified in general populations were confirmed at single nucleotide polymorphism (SNP) levels (P &lt; .05). Four of 32 loci (IL12A, IL12RB1, STAT4, and IRF2) associated with ppFEV1 (P &lt; 10−4) belong to the TH1 or IL-12 cytokine family pathway. By using a linear additive model, these 4 TH1 pathway SNPs cumulatively explained 2.9% to 7.8% of the variance in ppFEV1 values in 4 populations (P = 3 × 10−11). Genetic scores of these 4 SNPs were associated with ppFEV1 values (P = 2 × 10−7) and the American Thoracic Society severe asthma classification (P = .005) in the Severe Asthma Research Program population. TH2 pathway genes (IL13, TSLP, IL33, and IL1RL1) conferring asthma susceptibility were not associated with lung function. Genes involved in airway structure/remodeling are associated with lung function in both general populations and asthmatic subjects. TH1 pathway genes involved in anti-virus/bacterial infection and inflammation modify lung function in asthmatic subjects. Genes associated with lung function that might affect asthma severity are distinct from those genes associated with asthma susceptibility.</description><identifier>ISSN: 0091-6749</identifier><identifier>EISSN: 1097-6825</identifier><identifier>DOI: 10.1016/j.jaci.2013.01.051</identifier><identifier>PMID: 23541324</identifier><identifier>CODEN: JACIBY</identifier><language>eng</language><publisher>New York, NY: Mosby, Inc</publisher><subject>Asthma ; Asthma - genetics ; Asthma - metabolism ; Asthma - physiopathology ; Biological and medical sciences ; Female ; FEV1 ; Forced Expiratory Volume - genetics ; Fundamental and applied biological sciences. Psychology ; Fundamental immunology ; Genome-Wide Association Study ; Genomes ; Humans ; IL12A ; IL12RB1 ; Interferon Regulatory Factor-2 - genetics ; Interferon Regulatory Factor-2 - metabolism ; Interleukin-12 - genetics ; Interleukin-12 - metabolism ; IRF2 ; Lung - metabolism ; Lung - physiopathology ; Lung function ; Male ; Medical sciences ; Polymorphism, Single Nucleotide ; Quality control ; Respiratory Function Tests ; Sarcoidosis. Granulomatous diseases of unproved etiology. Connective tissue diseases. Elastic tissue diseases. Vasculitis ; STAT4 ; STAT4 Transcription Factor - genetics ; STAT4 Transcription Factor - metabolism ; Studies ; TH1 ; Th1 Cells - immunology ; Th1 Cells - metabolism ; Vital Capacity - genetics</subject><ispartof>Journal of allergy and clinical immunology, 2013-08, Vol.132 (2), p.313-320.e15</ispartof><rights>2013 American Academy of Allergy, Asthma &amp; Immunology</rights><rights>2014 INIST-CNRS</rights><rights>Copyright © 2013 American Academy of Allergy, Asthma &amp; Immunology. Published by Mosby, Inc. All rights reserved.</rights><rights>Copyright Elsevier Limited Aug 2013</rights><rights>2013 American Academy of Allergy, Asthma &amp; Immunology 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4281-230a8a0e3341f658459023cbb25c5f13275b23ee8bbe3cc06d67eb537d684b8b3</citedby><cites>FETCH-LOGICAL-c4281-230a8a0e3341f658459023cbb25c5f13275b23ee8bbe3cc06d67eb537d684b8b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0091674913002613$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,776,780,881,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=27609654$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23541324$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Xingnan</creatorcontrib><creatorcontrib>Hawkins, Gregory A.</creatorcontrib><creatorcontrib>Ampleford, Elizabeth J.</creatorcontrib><creatorcontrib>Moore, Wendy C.</creatorcontrib><creatorcontrib>Li, Huashi</creatorcontrib><creatorcontrib>Hastie, Annette T.</creatorcontrib><creatorcontrib>Howard, Timothy D.</creatorcontrib><creatorcontrib>Boushey, Homer A.</creatorcontrib><creatorcontrib>Busse, William W.</creatorcontrib><creatorcontrib>Calhoun, William J.</creatorcontrib><creatorcontrib>Castro, Mario</creatorcontrib><creatorcontrib>Erzurum, Serpil C.</creatorcontrib><creatorcontrib>Israel, Elliot</creatorcontrib><creatorcontrib>Lemanske, Robert F.</creatorcontrib><creatorcontrib>Szefler, Stanley J.</creatorcontrib><creatorcontrib>Wasserman, Stephen I.</creatorcontrib><creatorcontrib>Wenzel, Sally E.</creatorcontrib><creatorcontrib>Peters, Stephen P.</creatorcontrib><creatorcontrib>Meyers, Deborah A.</creatorcontrib><creatorcontrib>Bleecker, Eugene R.</creatorcontrib><title>Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients</title><title>Journal of allergy and clinical immunology</title><addtitle>J Allergy Clin Immunol</addtitle><description>Recent meta-analyses of genome-wide association studies in general populations of European descent have identified 28 loci for lung function. We sought to identify novel lung function loci specifically for asthma and to confirm lung function loci identified in general populations. Genome-wide association studies of lung function (percent predicted FEV1 [ppFEV1], percent predicted forced vital capacity, and FEV1/forced vital capacity ratio) were performed in 4 white populations of European descent (n = 1544), followed by meta-analyses. Seven of 28 previously identified lung function loci (HHIP, FAM13A, THSD4, GSTCD, NOTCH4-AGER, RARB, and ZNF323) identified in general populations were confirmed at single nucleotide polymorphism (SNP) levels (P &lt; .05). Four of 32 loci (IL12A, IL12RB1, STAT4, and IRF2) associated with ppFEV1 (P &lt; 10−4) belong to the TH1 or IL-12 cytokine family pathway. By using a linear additive model, these 4 TH1 pathway SNPs cumulatively explained 2.9% to 7.8% of the variance in ppFEV1 values in 4 populations (P = 3 × 10−11). Genetic scores of these 4 SNPs were associated with ppFEV1 values (P = 2 × 10−7) and the American Thoracic Society severe asthma classification (P = .005) in the Severe Asthma Research Program population. TH2 pathway genes (IL13, TSLP, IL33, and IL1RL1) conferring asthma susceptibility were not associated with lung function. Genes involved in airway structure/remodeling are associated with lung function in both general populations and asthmatic subjects. TH1 pathway genes involved in anti-virus/bacterial infection and inflammation modify lung function in asthmatic subjects. Genes associated with lung function that might affect asthma severity are distinct from those genes associated with asthma susceptibility.</description><subject>Asthma</subject><subject>Asthma - genetics</subject><subject>Asthma - metabolism</subject><subject>Asthma - physiopathology</subject><subject>Biological and medical sciences</subject><subject>Female</subject><subject>FEV1</subject><subject>Forced Expiratory Volume - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Fundamental immunology</subject><subject>Genome-Wide Association Study</subject><subject>Genomes</subject><subject>Humans</subject><subject>IL12A</subject><subject>IL12RB1</subject><subject>Interferon Regulatory Factor-2 - genetics</subject><subject>Interferon Regulatory Factor-2 - metabolism</subject><subject>Interleukin-12 - genetics</subject><subject>Interleukin-12 - metabolism</subject><subject>IRF2</subject><subject>Lung - metabolism</subject><subject>Lung - physiopathology</subject><subject>Lung function</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Quality control</subject><subject>Respiratory Function Tests</subject><subject>Sarcoidosis. Granulomatous diseases of unproved etiology. Connective tissue diseases. Elastic tissue diseases. Vasculitis</subject><subject>STAT4</subject><subject>STAT4 Transcription Factor - genetics</subject><subject>STAT4 Transcription Factor - metabolism</subject><subject>Studies</subject><subject>TH1</subject><subject>Th1 Cells - immunology</subject><subject>Th1 Cells - metabolism</subject><subject>Vital Capacity - genetics</subject><issn>0091-6749</issn><issn>1097-6825</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1q3DAURkVpaSZpX6CLYiiFbOzq3zaUQAlpEgh0k66FLF_PyNjSVLIzzNtH7kzSNouuhKRzj-7Vh9AHgguCifzSF702tqCYsAKTAgvyCq0IrstcVlS8RiuMa5LLktcn6DTGHqc9q-q36IQywQmjfIXcNTg_Qr6zLWQ6Rm-snqx3WZzmdp-lUzfZzkLM7m9IttXTZqf32RpcOnnCoc12dtpkw-zWWTc781tgXQKmzZh0Zim0yRTfoTedHiK8P65n6Of3q_vLm_zux_Xt5be73HBakZwyrCuNgTFOOikqLmpMmWkaKozoUuelaCgDqJoGmDFYtrKERrCylRVvqoadoYuDdzs3I7QmvR30oLbBjjrslddW_Xvj7Eat_YNiJZdJnwTnR0Hwv2aIkxptNDAM2oGfoyKclIIRzkhCP71Aez8Hl8ZTRAhOa8kkThQ9UCb4GAN0z80QrJY4Va-WONUSp8JEpThT0ce_x3guecovAZ-PgI5GD13Qztj4hyslrqVYuK8HDtKnP1gIKpoUiIHWBjCTar39Xx-PlfG_Vg</recordid><startdate>201308</startdate><enddate>201308</enddate><creator>Li, Xingnan</creator><creator>Hawkins, Gregory A.</creator><creator>Ampleford, Elizabeth J.</creator><creator>Moore, Wendy C.</creator><creator>Li, Huashi</creator><creator>Hastie, Annette T.</creator><creator>Howard, Timothy D.</creator><creator>Boushey, Homer A.</creator><creator>Busse, William W.</creator><creator>Calhoun, William J.</creator><creator>Castro, Mario</creator><creator>Erzurum, Serpil C.</creator><creator>Israel, Elliot</creator><creator>Lemanske, Robert F.</creator><creator>Szefler, Stanley J.</creator><creator>Wasserman, Stephen I.</creator><creator>Wenzel, Sally E.</creator><creator>Peters, Stephen P.</creator><creator>Meyers, Deborah A.</creator><creator>Bleecker, Eugene R.</creator><general>Mosby, Inc</general><general>Elsevier</general><general>Elsevier Limited</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SS</scope><scope>7T5</scope><scope>H94</scope><scope>K9.</scope><scope>NAPCQ</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201308</creationdate><title>Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients</title><author>Li, Xingnan ; Hawkins, Gregory A. ; Ampleford, Elizabeth J. ; Moore, Wendy C. ; Li, Huashi ; Hastie, Annette T. ; Howard, Timothy D. ; Boushey, Homer A. ; Busse, William W. ; Calhoun, William J. ; Castro, Mario ; Erzurum, Serpil C. ; Israel, Elliot ; Lemanske, Robert F. ; Szefler, Stanley J. ; Wasserman, Stephen I. ; Wenzel, Sally E. ; Peters, Stephen P. ; Meyers, Deborah A. ; Bleecker, Eugene R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4281-230a8a0e3341f658459023cbb25c5f13275b23ee8bbe3cc06d67eb537d684b8b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Asthma</topic><topic>Asthma - genetics</topic><topic>Asthma - metabolism</topic><topic>Asthma - physiopathology</topic><topic>Biological and medical sciences</topic><topic>Female</topic><topic>FEV1</topic><topic>Forced Expiratory Volume - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Fundamental immunology</topic><topic>Genome-Wide Association Study</topic><topic>Genomes</topic><topic>Humans</topic><topic>IL12A</topic><topic>IL12RB1</topic><topic>Interferon Regulatory Factor-2 - genetics</topic><topic>Interferon Regulatory Factor-2 - metabolism</topic><topic>Interleukin-12 - genetics</topic><topic>Interleukin-12 - metabolism</topic><topic>IRF2</topic><topic>Lung - metabolism</topic><topic>Lung - physiopathology</topic><topic>Lung function</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Quality control</topic><topic>Respiratory Function Tests</topic><topic>Sarcoidosis. Granulomatous diseases of unproved etiology. Connective tissue diseases. Elastic tissue diseases. Vasculitis</topic><topic>STAT4</topic><topic>STAT4 Transcription Factor - genetics</topic><topic>STAT4 Transcription Factor - metabolism</topic><topic>Studies</topic><topic>TH1</topic><topic>Th1 Cells - immunology</topic><topic>Th1 Cells - metabolism</topic><topic>Vital Capacity - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Xingnan</creatorcontrib><creatorcontrib>Hawkins, Gregory A.</creatorcontrib><creatorcontrib>Ampleford, Elizabeth J.</creatorcontrib><creatorcontrib>Moore, Wendy C.</creatorcontrib><creatorcontrib>Li, Huashi</creatorcontrib><creatorcontrib>Hastie, Annette T.</creatorcontrib><creatorcontrib>Howard, Timothy D.</creatorcontrib><creatorcontrib>Boushey, Homer A.</creatorcontrib><creatorcontrib>Busse, William W.</creatorcontrib><creatorcontrib>Calhoun, William J.</creatorcontrib><creatorcontrib>Castro, Mario</creatorcontrib><creatorcontrib>Erzurum, Serpil C.</creatorcontrib><creatorcontrib>Israel, Elliot</creatorcontrib><creatorcontrib>Lemanske, Robert F.</creatorcontrib><creatorcontrib>Szefler, Stanley J.</creatorcontrib><creatorcontrib>Wasserman, Stephen I.</creatorcontrib><creatorcontrib>Wenzel, Sally E.</creatorcontrib><creatorcontrib>Peters, Stephen P.</creatorcontrib><creatorcontrib>Meyers, Deborah A.</creatorcontrib><creatorcontrib>Bleecker, Eugene R.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of allergy and clinical immunology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Xingnan</au><au>Hawkins, Gregory A.</au><au>Ampleford, Elizabeth J.</au><au>Moore, Wendy C.</au><au>Li, Huashi</au><au>Hastie, Annette T.</au><au>Howard, Timothy D.</au><au>Boushey, Homer A.</au><au>Busse, William W.</au><au>Calhoun, William J.</au><au>Castro, Mario</au><au>Erzurum, Serpil C.</au><au>Israel, Elliot</au><au>Lemanske, Robert F.</au><au>Szefler, Stanley J.</au><au>Wasserman, Stephen I.</au><au>Wenzel, Sally E.</au><au>Peters, Stephen P.</au><au>Meyers, Deborah A.</au><au>Bleecker, Eugene R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients</atitle><jtitle>Journal of allergy and clinical immunology</jtitle><addtitle>J Allergy Clin Immunol</addtitle><date>2013-08</date><risdate>2013</risdate><volume>132</volume><issue>2</issue><spage>313</spage><epage>320.e15</epage><pages>313-320.e15</pages><issn>0091-6749</issn><eissn>1097-6825</eissn><coden>JACIBY</coden><abstract>Recent meta-analyses of genome-wide association studies in general populations of European descent have identified 28 loci for lung function. We sought to identify novel lung function loci specifically for asthma and to confirm lung function loci identified in general populations. Genome-wide association studies of lung function (percent predicted FEV1 [ppFEV1], percent predicted forced vital capacity, and FEV1/forced vital capacity ratio) were performed in 4 white populations of European descent (n = 1544), followed by meta-analyses. Seven of 28 previously identified lung function loci (HHIP, FAM13A, THSD4, GSTCD, NOTCH4-AGER, RARB, and ZNF323) identified in general populations were confirmed at single nucleotide polymorphism (SNP) levels (P &lt; .05). Four of 32 loci (IL12A, IL12RB1, STAT4, and IRF2) associated with ppFEV1 (P &lt; 10−4) belong to the TH1 or IL-12 cytokine family pathway. By using a linear additive model, these 4 TH1 pathway SNPs cumulatively explained 2.9% to 7.8% of the variance in ppFEV1 values in 4 populations (P = 3 × 10−11). Genetic scores of these 4 SNPs were associated with ppFEV1 values (P = 2 × 10−7) and the American Thoracic Society severe asthma classification (P = .005) in the Severe Asthma Research Program population. TH2 pathway genes (IL13, TSLP, IL33, and IL1RL1) conferring asthma susceptibility were not associated with lung function. Genes involved in airway structure/remodeling are associated with lung function in both general populations and asthmatic subjects. TH1 pathway genes involved in anti-virus/bacterial infection and inflammation modify lung function in asthmatic subjects. Genes associated with lung function that might affect asthma severity are distinct from those genes associated with asthma susceptibility.</abstract><cop>New York, NY</cop><pub>Mosby, Inc</pub><pmid>23541324</pmid><doi>10.1016/j.jaci.2013.01.051</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record>
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subjects Asthma
Asthma - genetics
Asthma - metabolism
Asthma - physiopathology
Biological and medical sciences
Female
FEV1
Forced Expiratory Volume - genetics
Fundamental and applied biological sciences. Psychology
Fundamental immunology
Genome-Wide Association Study
Genomes
Humans
IL12A
IL12RB1
Interferon Regulatory Factor-2 - genetics
Interferon Regulatory Factor-2 - metabolism
Interleukin-12 - genetics
Interleukin-12 - metabolism
IRF2
Lung - metabolism
Lung - physiopathology
Lung function
Male
Medical sciences
Polymorphism, Single Nucleotide
Quality control
Respiratory Function Tests
Sarcoidosis. Granulomatous diseases of unproved etiology. Connective tissue diseases. Elastic tissue diseases. Vasculitis
STAT4
STAT4 Transcription Factor - genetics
STAT4 Transcription Factor - metabolism
Studies
TH1
Th1 Cells - immunology
Th1 Cells - metabolism
Vital Capacity - genetics
title Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients
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