Regulation of CCN1 via the 3′-untranslated region
The 3′-untranslated region (UTR) is known to be a critical regulator of post-transcriptional events that determine the gene expression at the RNA level. The gene CCN1 is one of the classical members of the matricellular CCN family and is involved in a number of biological processes during mammalian...
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Veröffentlicht in: | Journal of cell communication and signaling 2013-08, Vol.7 (3), p.207-217 |
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creator | Nakagawa, Yosuke Minato, Masanao Sumiyoshi, Kumi Maeda, Aya Hara, Chikako Murase, Yurika Nishida, Takashi Kubota, Satoshi Takigawa, Masaharu |
description | The 3′-untranslated region (UTR) is known to be a critical regulator of post-transcriptional events that determine the gene expression at the RNA level. The gene
CCN1
is one of the classical members of the matricellular CCN family and is involved in a number of biological processes during mammalian development. In the present study, the 600-bp 3′-UTR of
CCN1
was functionally characterized. Reporter gene analysis revealed that the entire 3′-UTR profoundly repressed gene expression in cis in different types of the cells, to which both the proximal and distal-halves of the 3′-UTR segments contributed almost equally. Deletion analysis of the 3′-UTR indicated a distinct functional element in the proximal half, whereas a putative target for microRNA-181s was predicted in silico in the distal half. Of note, the repressive RNA element in the proximal half was shown to be capable of forming a stable secondary structure. However, unexpectedly, a reporter construct with a tandem repeat of the predicted miR-181 targets failed to respond to miR-181a. In addition, the other major structured element predicted in the distal half was similarly characterized. To our surprise, the second element rather enhanced the reporter gene expression in cis. These results indicate the involvement of multiple regulatory elements in the
CCN1
3′-UTR and suggest the complexity of the miRNA action as well as the 3′-UTR-mediated gene regulation. |
doi_str_mv | 10.1007/s12079-013-0202-x |
format | Article |
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CCN1
is one of the classical members of the matricellular CCN family and is involved in a number of biological processes during mammalian development. In the present study, the 600-bp 3′-UTR of
CCN1
was functionally characterized. Reporter gene analysis revealed that the entire 3′-UTR profoundly repressed gene expression in cis in different types of the cells, to which both the proximal and distal-halves of the 3′-UTR segments contributed almost equally. Deletion analysis of the 3′-UTR indicated a distinct functional element in the proximal half, whereas a putative target for microRNA-181s was predicted in silico in the distal half. Of note, the repressive RNA element in the proximal half was shown to be capable of forming a stable secondary structure. However, unexpectedly, a reporter construct with a tandem repeat of the predicted miR-181 targets failed to respond to miR-181a. In addition, the other major structured element predicted in the distal half was similarly characterized. To our surprise, the second element rather enhanced the reporter gene expression in cis. These results indicate the involvement of multiple regulatory elements in the
CCN1
3′-UTR and suggest the complexity of the miRNA action as well as the 3′-UTR-mediated gene regulation.</description><identifier>ISSN: 1873-9601</identifier><identifier>EISSN: 1873-961X</identifier><identifier>DOI: 10.1007/s12079-013-0202-x</identifier><identifier>PMID: 23677691</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>3' Untranslated regions ; 3′‐UTR ; Biomedical and Life Sciences ; Biomedicine ; CCN family ; CCN1 ; Cell Biology ; Clonal deletion ; Cyr61 ; Gene expression ; Gene regulation ; Life Sciences ; miRNA ; Post-transcription ; Post‐transcriptional regulation ; Protein structure ; Regulatory sequences ; Reporter gene ; Research Article ; Secondary structure ; Transcription</subject><ispartof>Journal of cell communication and signaling, 2013-08, Vol.7 (3), p.207-217</ispartof><rights>The International CCN Society 2013</rights><rights>The International CCN Society</rights><rights>Journal of Cell Communication and Signaling is a copyright of Springer, 2013.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6206-11b3e7bcd201093b573d3b2188904805ee7b648be6a3fcadf02265f186b82c933</citedby><cites>FETCH-LOGICAL-c6206-11b3e7bcd201093b573d3b2188904805ee7b648be6a3fcadf02265f186b82c933</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3709046/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3709046/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,41467,42536,51297,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23677691$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nakagawa, Yosuke</creatorcontrib><creatorcontrib>Minato, Masanao</creatorcontrib><creatorcontrib>Sumiyoshi, Kumi</creatorcontrib><creatorcontrib>Maeda, Aya</creatorcontrib><creatorcontrib>Hara, Chikako</creatorcontrib><creatorcontrib>Murase, Yurika</creatorcontrib><creatorcontrib>Nishida, Takashi</creatorcontrib><creatorcontrib>Kubota, Satoshi</creatorcontrib><creatorcontrib>Takigawa, Masaharu</creatorcontrib><title>Regulation of CCN1 via the 3′-untranslated region</title><title>Journal of cell communication and signaling</title><addtitle>J. Cell Commun. Signal</addtitle><addtitle>J Cell Commun Signal</addtitle><description>The 3′-untranslated region (UTR) is known to be a critical regulator of post-transcriptional events that determine the gene expression at the RNA level. The gene
CCN1
is one of the classical members of the matricellular CCN family and is involved in a number of biological processes during mammalian development. In the present study, the 600-bp 3′-UTR of
CCN1
was functionally characterized. Reporter gene analysis revealed that the entire 3′-UTR profoundly repressed gene expression in cis in different types of the cells, to which both the proximal and distal-halves of the 3′-UTR segments contributed almost equally. Deletion analysis of the 3′-UTR indicated a distinct functional element in the proximal half, whereas a putative target for microRNA-181s was predicted in silico in the distal half. Of note, the repressive RNA element in the proximal half was shown to be capable of forming a stable secondary structure. However, unexpectedly, a reporter construct with a tandem repeat of the predicted miR-181 targets failed to respond to miR-181a. In addition, the other major structured element predicted in the distal half was similarly characterized. To our surprise, the second element rather enhanced the reporter gene expression in cis. These results indicate the involvement of multiple regulatory elements in the
CCN1
3′-UTR and suggest the complexity of the miRNA action as well as the 3′-UTR-mediated gene regulation.</description><subject>3' Untranslated regions</subject><subject>3′‐UTR</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>CCN family</subject><subject>CCN1</subject><subject>Cell Biology</subject><subject>Clonal deletion</subject><subject>Cyr61</subject><subject>Gene expression</subject><subject>Gene regulation</subject><subject>Life Sciences</subject><subject>miRNA</subject><subject>Post-transcription</subject><subject>Post‐transcriptional regulation</subject><subject>Protein structure</subject><subject>Regulatory sequences</subject><subject>Reporter gene</subject><subject>Research Article</subject><subject>Secondary structure</subject><subject>Transcription</subject><issn>1873-9601</issn><issn>1873-961X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNqFkc1KxDAUhYMo_j-AGym4cVO9N5kmjQtBi6PCoOAPuAtpm46VTqvJdNSdz-Qj-SRmrA4qiKsE7ndOzs0hZANhBwHErkMKQoaALAQKNHyaI8sYCxZKjjfzszvgEllx7g4gEhHFRbJEGReCS1wm7MIM20qPy6YOmiJIkjMMJqUOxrcmYG8vr2Fbj62unUdMHlgz9OAaWSh05cz657lKrvtHV8lJODg_Pk0OBmHGKfAQMWVGpFlOAUGyNBIsZynFOJbQiyEyfsh7cWq4ZkWm8wIo5VGBMU9jmknGVsl-53vfpiOTZ2YapVL3thxp-6waXaqfk7q8VcNmopgA_wT3BtufBrZ5aI0bq1HpMlNVujZN6xQyKSWj8gPd-oXeNa2t_XoKZS_yHxdT6insqMw2zllTzMIgqGklqqtE-UrUtBL15DWb37eYKb468MBeBzyWlXn-31ElySU77AOgnOamndh5XT009lvuPyO9A6bsp44</recordid><startdate>201308</startdate><enddate>201308</enddate><creator>Nakagawa, Yosuke</creator><creator>Minato, Masanao</creator><creator>Sumiyoshi, Kumi</creator><creator>Maeda, Aya</creator><creator>Hara, Chikako</creator><creator>Murase, Yurika</creator><creator>Nishida, Takashi</creator><creator>Kubota, Satoshi</creator><creator>Takigawa, Masaharu</creator><general>Springer Netherlands</general><general>John Wiley & Sons, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201308</creationdate><title>Regulation of CCN1 via the 3′-untranslated region</title><author>Nakagawa, Yosuke ; Minato, Masanao ; Sumiyoshi, Kumi ; Maeda, Aya ; Hara, Chikako ; Murase, Yurika ; Nishida, Takashi ; Kubota, Satoshi ; Takigawa, Masaharu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6206-11b3e7bcd201093b573d3b2188904805ee7b648be6a3fcadf02265f186b82c933</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>3' Untranslated regions</topic><topic>3′‐UTR</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>CCN family</topic><topic>CCN1</topic><topic>Cell Biology</topic><topic>Clonal deletion</topic><topic>Cyr61</topic><topic>Gene expression</topic><topic>Gene regulation</topic><topic>Life Sciences</topic><topic>miRNA</topic><topic>Post-transcription</topic><topic>Post‐transcriptional regulation</topic><topic>Protein structure</topic><topic>Regulatory sequences</topic><topic>Reporter gene</topic><topic>Research Article</topic><topic>Secondary structure</topic><topic>Transcription</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nakagawa, Yosuke</creatorcontrib><creatorcontrib>Minato, Masanao</creatorcontrib><creatorcontrib>Sumiyoshi, Kumi</creatorcontrib><creatorcontrib>Maeda, Aya</creatorcontrib><creatorcontrib>Hara, Chikako</creatorcontrib><creatorcontrib>Murase, Yurika</creatorcontrib><creatorcontrib>Nishida, Takashi</creatorcontrib><creatorcontrib>Kubota, Satoshi</creatorcontrib><creatorcontrib>Takigawa, Masaharu</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of cell communication and signaling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nakagawa, Yosuke</au><au>Minato, Masanao</au><au>Sumiyoshi, Kumi</au><au>Maeda, Aya</au><au>Hara, Chikako</au><au>Murase, Yurika</au><au>Nishida, Takashi</au><au>Kubota, Satoshi</au><au>Takigawa, Masaharu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Regulation of CCN1 via the 3′-untranslated region</atitle><jtitle>Journal of cell communication and signaling</jtitle><stitle>J. Cell Commun. Signal</stitle><addtitle>J Cell Commun Signal</addtitle><date>2013-08</date><risdate>2013</risdate><volume>7</volume><issue>3</issue><spage>207</spage><epage>217</epage><pages>207-217</pages><issn>1873-9601</issn><eissn>1873-961X</eissn><abstract>The 3′-untranslated region (UTR) is known to be a critical regulator of post-transcriptional events that determine the gene expression at the RNA level. The gene
CCN1
is one of the classical members of the matricellular CCN family and is involved in a number of biological processes during mammalian development. In the present study, the 600-bp 3′-UTR of
CCN1
was functionally characterized. Reporter gene analysis revealed that the entire 3′-UTR profoundly repressed gene expression in cis in different types of the cells, to which both the proximal and distal-halves of the 3′-UTR segments contributed almost equally. Deletion analysis of the 3′-UTR indicated a distinct functional element in the proximal half, whereas a putative target for microRNA-181s was predicted in silico in the distal half. Of note, the repressive RNA element in the proximal half was shown to be capable of forming a stable secondary structure. However, unexpectedly, a reporter construct with a tandem repeat of the predicted miR-181 targets failed to respond to miR-181a. In addition, the other major structured element predicted in the distal half was similarly characterized. To our surprise, the second element rather enhanced the reporter gene expression in cis. These results indicate the involvement of multiple regulatory elements in the
CCN1
3′-UTR and suggest the complexity of the miRNA action as well as the 3′-UTR-mediated gene regulation.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>23677691</pmid><doi>10.1007/s12079-013-0202-x</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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source | SpringerLink Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection |
subjects | 3' Untranslated regions 3′‐UTR Biomedical and Life Sciences Biomedicine CCN family CCN1 Cell Biology Clonal deletion Cyr61 Gene expression Gene regulation Life Sciences miRNA Post-transcription Post‐transcriptional regulation Protein structure Regulatory sequences Reporter gene Research Article Secondary structure Transcription |
title | Regulation of CCN1 via the 3′-untranslated region |
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