RegaDB: community-driven data management and analysis for infectious diseases
RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and off...
Gespeichert in:
| Veröffentlicht in: | Bioinformatics 2013-06, Vol.29 (11), p.1477-1480 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1480 |
|---|---|
| container_issue | 11 |
| container_start_page | 1477 |
| container_title | Bioinformatics |
| container_volume | 29 |
| creator | Libin, Pieter Beheydt, Gertjan Deforche, Koen Imbrechts, Stijn Ferreira, Fossie Van Laethem, Kristel Theys, Kristof Carvalho, Ana Patricia Cavaco-Silva, Joana Lapadula, Giuseppe Torti, Carlo Assel, Matthias Wesner, Stefan Snoeck, Joke Ruelle, Jean De Bel, Annelies Lacor, Patrick De Munter, Paul Van Wijngaerden, Eric Zazzi, Maurizio Kaiser, Rolf Ayouba, Ahidjo Peeters, Martine de Oliveira, Tulio Alcantara, Luiz C J Grossman, Zehava Sloot, Peter Otelea, Dan Paraschiv, Simona Boucher, Charles Camacho, Ricardo J Vandamme, Anne-Mieke |
| description | RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface.
Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture. |
| doi_str_mv | 10.1093/bioinformatics/btt162 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3661054</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1399054927</sourcerecordid><originalsourceid>FETCH-LOGICAL-c514t-4f168151c95bdb31f7aac645dcc7e14d11fb6d41d41cb75017bc6e0a50a47b4b3</originalsourceid><addsrcrecordid>eNqNUdtKAzEQDaJYrX6Cso--rGaay3Z9ELReoSKIPofJZWtkL7pJC_17I61F34QJM5Az55zhEHIE9BRoyc6073xbdX2D0ZtwpmMEOdoie8BkkfMxwPZmpmxA9kN4p5QKKuQuGYyY5GIMYo88PrsZXl-dZ6Zrmnnr4zK3vV-4NrMYMWuwxZlrXBszbG16WC-DD1kSzpK8M9F385BZHxwGFw7IToV1cIfrPiSvtzcvk_t8-nT3MLmc5kYAjzmvQCZ1MKXQVjOoCkSTHFljCgfcAlRaWg6pjC4EhUIb6SgKirzQXLMhuVjxfsx146xJ_nqs1UfvG-yXqkOv_v60_k3NuoViUgIVPBGcrAn67nPuQlSND8bVNbYuHaSAlWXClaPiH9BiRCUk3gQVK6jpuxB6V20cAVXfqam_qalVamnv-Pc5m62fmNgXiWSa6Q</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1372061610</pqid></control><display><type>article</type><title>RegaDB: community-driven data management and analysis for infectious diseases</title><source>MEDLINE</source><source>Oxford Journals Open Access Collection</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><creator>Libin, Pieter ; Beheydt, Gertjan ; Deforche, Koen ; Imbrechts, Stijn ; Ferreira, Fossie ; Van Laethem, Kristel ; Theys, Kristof ; Carvalho, Ana Patricia ; Cavaco-Silva, Joana ; Lapadula, Giuseppe ; Torti, Carlo ; Assel, Matthias ; Wesner, Stefan ; Snoeck, Joke ; Ruelle, Jean ; De Bel, Annelies ; Lacor, Patrick ; De Munter, Paul ; Van Wijngaerden, Eric ; Zazzi, Maurizio ; Kaiser, Rolf ; Ayouba, Ahidjo ; Peeters, Martine ; de Oliveira, Tulio ; Alcantara, Luiz C J ; Grossman, Zehava ; Sloot, Peter ; Otelea, Dan ; Paraschiv, Simona ; Boucher, Charles ; Camacho, Ricardo J ; Vandamme, Anne-Mieke</creator><creatorcontrib>Libin, Pieter ; Beheydt, Gertjan ; Deforche, Koen ; Imbrechts, Stijn ; Ferreira, Fossie ; Van Laethem, Kristel ; Theys, Kristof ; Carvalho, Ana Patricia ; Cavaco-Silva, Joana ; Lapadula, Giuseppe ; Torti, Carlo ; Assel, Matthias ; Wesner, Stefan ; Snoeck, Joke ; Ruelle, Jean ; De Bel, Annelies ; Lacor, Patrick ; De Munter, Paul ; Van Wijngaerden, Eric ; Zazzi, Maurizio ; Kaiser, Rolf ; Ayouba, Ahidjo ; Peeters, Martine ; de Oliveira, Tulio ; Alcantara, Luiz C J ; Grossman, Zehava ; Sloot, Peter ; Otelea, Dan ; Paraschiv, Simona ; Boucher, Charles ; Camacho, Ricardo J ; Vandamme, Anne-Mieke</creatorcontrib><description>RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface.
Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture.</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1367-4811</identifier><identifier>EISSN: 1460-2059</identifier><identifier>DOI: 10.1093/bioinformatics/btt162</identifier><identifier>PMID: 23645815</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Applications Notes ; Database Management Systems ; Databases, Factual ; Humans ; Software ; Virus Diseases - diagnosis ; Virus Diseases - therapy ; Virus Diseases - virology</subject><ispartof>Bioinformatics, 2013-06, Vol.29 (11), p.1477-1480</ispartof><rights>The Author 2013. Published by Oxford University Press. 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c514t-4f168151c95bdb31f7aac645dcc7e14d11fb6d41d41cb75017bc6e0a50a47b4b3</citedby><cites>FETCH-LOGICAL-c514t-4f168151c95bdb31f7aac645dcc7e14d11fb6d41d41cb75017bc6e0a50a47b4b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661054/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661054/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23645815$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Libin, Pieter</creatorcontrib><creatorcontrib>Beheydt, Gertjan</creatorcontrib><creatorcontrib>Deforche, Koen</creatorcontrib><creatorcontrib>Imbrechts, Stijn</creatorcontrib><creatorcontrib>Ferreira, Fossie</creatorcontrib><creatorcontrib>Van Laethem, Kristel</creatorcontrib><creatorcontrib>Theys, Kristof</creatorcontrib><creatorcontrib>Carvalho, Ana Patricia</creatorcontrib><creatorcontrib>Cavaco-Silva, Joana</creatorcontrib><creatorcontrib>Lapadula, Giuseppe</creatorcontrib><creatorcontrib>Torti, Carlo</creatorcontrib><creatorcontrib>Assel, Matthias</creatorcontrib><creatorcontrib>Wesner, Stefan</creatorcontrib><creatorcontrib>Snoeck, Joke</creatorcontrib><creatorcontrib>Ruelle, Jean</creatorcontrib><creatorcontrib>De Bel, Annelies</creatorcontrib><creatorcontrib>Lacor, Patrick</creatorcontrib><creatorcontrib>De Munter, Paul</creatorcontrib><creatorcontrib>Van Wijngaerden, Eric</creatorcontrib><creatorcontrib>Zazzi, Maurizio</creatorcontrib><creatorcontrib>Kaiser, Rolf</creatorcontrib><creatorcontrib>Ayouba, Ahidjo</creatorcontrib><creatorcontrib>Peeters, Martine</creatorcontrib><creatorcontrib>de Oliveira, Tulio</creatorcontrib><creatorcontrib>Alcantara, Luiz C J</creatorcontrib><creatorcontrib>Grossman, Zehava</creatorcontrib><creatorcontrib>Sloot, Peter</creatorcontrib><creatorcontrib>Otelea, Dan</creatorcontrib><creatorcontrib>Paraschiv, Simona</creatorcontrib><creatorcontrib>Boucher, Charles</creatorcontrib><creatorcontrib>Camacho, Ricardo J</creatorcontrib><creatorcontrib>Vandamme, Anne-Mieke</creatorcontrib><title>RegaDB: community-driven data management and analysis for infectious diseases</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface.
Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture.</description><subject>Applications Notes</subject><subject>Database Management Systems</subject><subject>Databases, Factual</subject><subject>Humans</subject><subject>Software</subject><subject>Virus Diseases - diagnosis</subject><subject>Virus Diseases - therapy</subject><subject>Virus Diseases - virology</subject><issn>1367-4803</issn><issn>1367-4811</issn><issn>1460-2059</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNUdtKAzEQDaJYrX6Cso--rGaay3Z9ELReoSKIPofJZWtkL7pJC_17I61F34QJM5Az55zhEHIE9BRoyc6073xbdX2D0ZtwpmMEOdoie8BkkfMxwPZmpmxA9kN4p5QKKuQuGYyY5GIMYo88PrsZXl-dZ6Zrmnnr4zK3vV-4NrMYMWuwxZlrXBszbG16WC-DD1kSzpK8M9F385BZHxwGFw7IToV1cIfrPiSvtzcvk_t8-nT3MLmc5kYAjzmvQCZ1MKXQVjOoCkSTHFljCgfcAlRaWg6pjC4EhUIb6SgKirzQXLMhuVjxfsx146xJ_nqs1UfvG-yXqkOv_v60_k3NuoViUgIVPBGcrAn67nPuQlSND8bVNbYuHaSAlWXClaPiH9BiRCUk3gQVK6jpuxB6V20cAVXfqam_qalVamnv-Pc5m62fmNgXiWSa6Q</recordid><startdate>20130601</startdate><enddate>20130601</enddate><creator>Libin, Pieter</creator><creator>Beheydt, Gertjan</creator><creator>Deforche, Koen</creator><creator>Imbrechts, Stijn</creator><creator>Ferreira, Fossie</creator><creator>Van Laethem, Kristel</creator><creator>Theys, Kristof</creator><creator>Carvalho, Ana Patricia</creator><creator>Cavaco-Silva, Joana</creator><creator>Lapadula, Giuseppe</creator><creator>Torti, Carlo</creator><creator>Assel, Matthias</creator><creator>Wesner, Stefan</creator><creator>Snoeck, Joke</creator><creator>Ruelle, Jean</creator><creator>De Bel, Annelies</creator><creator>Lacor, Patrick</creator><creator>De Munter, Paul</creator><creator>Van Wijngaerden, Eric</creator><creator>Zazzi, Maurizio</creator><creator>Kaiser, Rolf</creator><creator>Ayouba, Ahidjo</creator><creator>Peeters, Martine</creator><creator>de Oliveira, Tulio</creator><creator>Alcantara, Luiz C J</creator><creator>Grossman, Zehava</creator><creator>Sloot, Peter</creator><creator>Otelea, Dan</creator><creator>Paraschiv, Simona</creator><creator>Boucher, Charles</creator><creator>Camacho, Ricardo J</creator><creator>Vandamme, Anne-Mieke</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20130601</creationdate><title>RegaDB: community-driven data management and analysis for infectious diseases</title><author>Libin, Pieter ; Beheydt, Gertjan ; Deforche, Koen ; Imbrechts, Stijn ; Ferreira, Fossie ; Van Laethem, Kristel ; Theys, Kristof ; Carvalho, Ana Patricia ; Cavaco-Silva, Joana ; Lapadula, Giuseppe ; Torti, Carlo ; Assel, Matthias ; Wesner, Stefan ; Snoeck, Joke ; Ruelle, Jean ; De Bel, Annelies ; Lacor, Patrick ; De Munter, Paul ; Van Wijngaerden, Eric ; Zazzi, Maurizio ; Kaiser, Rolf ; Ayouba, Ahidjo ; Peeters, Martine ; de Oliveira, Tulio ; Alcantara, Luiz C J ; Grossman, Zehava ; Sloot, Peter ; Otelea, Dan ; Paraschiv, Simona ; Boucher, Charles ; Camacho, Ricardo J ; Vandamme, Anne-Mieke</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c514t-4f168151c95bdb31f7aac645dcc7e14d11fb6d41d41cb75017bc6e0a50a47b4b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Applications Notes</topic><topic>Database Management Systems</topic><topic>Databases, Factual</topic><topic>Humans</topic><topic>Software</topic><topic>Virus Diseases - diagnosis</topic><topic>Virus Diseases - therapy</topic><topic>Virus Diseases - virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Libin, Pieter</creatorcontrib><creatorcontrib>Beheydt, Gertjan</creatorcontrib><creatorcontrib>Deforche, Koen</creatorcontrib><creatorcontrib>Imbrechts, Stijn</creatorcontrib><creatorcontrib>Ferreira, Fossie</creatorcontrib><creatorcontrib>Van Laethem, Kristel</creatorcontrib><creatorcontrib>Theys, Kristof</creatorcontrib><creatorcontrib>Carvalho, Ana Patricia</creatorcontrib><creatorcontrib>Cavaco-Silva, Joana</creatorcontrib><creatorcontrib>Lapadula, Giuseppe</creatorcontrib><creatorcontrib>Torti, Carlo</creatorcontrib><creatorcontrib>Assel, Matthias</creatorcontrib><creatorcontrib>Wesner, Stefan</creatorcontrib><creatorcontrib>Snoeck, Joke</creatorcontrib><creatorcontrib>Ruelle, Jean</creatorcontrib><creatorcontrib>De Bel, Annelies</creatorcontrib><creatorcontrib>Lacor, Patrick</creatorcontrib><creatorcontrib>De Munter, Paul</creatorcontrib><creatorcontrib>Van Wijngaerden, Eric</creatorcontrib><creatorcontrib>Zazzi, Maurizio</creatorcontrib><creatorcontrib>Kaiser, Rolf</creatorcontrib><creatorcontrib>Ayouba, Ahidjo</creatorcontrib><creatorcontrib>Peeters, Martine</creatorcontrib><creatorcontrib>de Oliveira, Tulio</creatorcontrib><creatorcontrib>Alcantara, Luiz C J</creatorcontrib><creatorcontrib>Grossman, Zehava</creatorcontrib><creatorcontrib>Sloot, Peter</creatorcontrib><creatorcontrib>Otelea, Dan</creatorcontrib><creatorcontrib>Paraschiv, Simona</creatorcontrib><creatorcontrib>Boucher, Charles</creatorcontrib><creatorcontrib>Camacho, Ricardo J</creatorcontrib><creatorcontrib>Vandamme, Anne-Mieke</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Libin, Pieter</au><au>Beheydt, Gertjan</au><au>Deforche, Koen</au><au>Imbrechts, Stijn</au><au>Ferreira, Fossie</au><au>Van Laethem, Kristel</au><au>Theys, Kristof</au><au>Carvalho, Ana Patricia</au><au>Cavaco-Silva, Joana</au><au>Lapadula, Giuseppe</au><au>Torti, Carlo</au><au>Assel, Matthias</au><au>Wesner, Stefan</au><au>Snoeck, Joke</au><au>Ruelle, Jean</au><au>De Bel, Annelies</au><au>Lacor, Patrick</au><au>De Munter, Paul</au><au>Van Wijngaerden, Eric</au><au>Zazzi, Maurizio</au><au>Kaiser, Rolf</au><au>Ayouba, Ahidjo</au><au>Peeters, Martine</au><au>de Oliveira, Tulio</au><au>Alcantara, Luiz C J</au><au>Grossman, Zehava</au><au>Sloot, Peter</au><au>Otelea, Dan</au><au>Paraschiv, Simona</au><au>Boucher, Charles</au><au>Camacho, Ricardo J</au><au>Vandamme, Anne-Mieke</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>RegaDB: community-driven data management and analysis for infectious diseases</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2013-06-01</date><risdate>2013</risdate><volume>29</volume><issue>11</issue><spage>1477</spage><epage>1480</epage><pages>1477-1480</pages><issn>1367-4803</issn><eissn>1367-4811</eissn><eissn>1460-2059</eissn><abstract>RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface.
Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>23645815</pmid><doi>10.1093/bioinformatics/btt162</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1367-4803 |
| ispartof | Bioinformatics, 2013-06, Vol.29 (11), p.1477-1480 |
| issn | 1367-4803 1367-4811 1460-2059 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3661054 |
| source | MEDLINE; Oxford Journals Open Access Collection; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Applications Notes Database Management Systems Databases, Factual Humans Software Virus Diseases - diagnosis Virus Diseases - therapy Virus Diseases - virology |
| title | RegaDB: community-driven data management and analysis for infectious diseases |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T23%3A51%3A38IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=RegaDB:%20community-driven%20data%20management%20and%20analysis%20for%20infectious%20diseases&rft.jtitle=Bioinformatics&rft.au=Libin,%20Pieter&rft.date=2013-06-01&rft.volume=29&rft.issue=11&rft.spage=1477&rft.epage=1480&rft.pages=1477-1480&rft.issn=1367-4803&rft.eissn=1367-4811&rft_id=info:doi/10.1093/bioinformatics/btt162&rft_dat=%3Cproquest_pubme%3E1399054927%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1372061610&rft_id=info:pmid/23645815&rfr_iscdi=true |