Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species

Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. As a result of their direct plant-plant connections with their host plant, parasitic plants have special opport...

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Veröffentlicht in:BMC evolutionary biology 2013-02, Vol.13 (1), p.48-48, Article 48
Hauptverfasser: Zhang, Yeting, Fernandez-Aparicio, Monica, Wafula, Eric K, Das, Malay, Jiao, Yuannian, Wickett, Norman J, Honaas, Loren A, Ralph, Paula E, Wojciechowski, Martin F, Timko, Michael P, Yoder, John I, Westwood, James H, Depamphilis, Claude W
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container_end_page 48
container_issue 1
container_start_page 48
container_title BMC evolutionary biology
container_volume 13
creator Zhang, Yeting
Fernandez-Aparicio, Monica
Wafula, Eric K
Das, Malay
Jiao, Yuannian
Wickett, Norman J
Honaas, Loren A
Ralph, Paula E
Wojciechowski, Martin F
Timko, Michael P
Yoder, John I
Westwood, James H
Depamphilis, Claude W
description Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. As a result of their direct plant-plant connections with their host plant, parasitic plants have special opportunities for horizontal gene transfer, the nonsexual transmission of genetic material across species boundaries. There is increasing evidence that parasitic plants have served as recipients and donors of horizontal gene transfer (HGT), but the long-term impacts of eukaryotic HGT in parasitic plants are largely unknown. Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through >150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants. The HGT-derived albumins in Phelipanche represent a novel example of how plants can acquire genes from other plants via HGT that then go on to duplicate, evolve, and retain the specialized features required to perform a unique host-derived function.
doi_str_mv 10.1186/1471-2148-13-48
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As a result of their direct plant-plant connections with their host plant, parasitic plants have special opportunities for horizontal gene transfer, the nonsexual transmission of genetic material across species boundaries. There is increasing evidence that parasitic plants have served as recipients and donors of horizontal gene transfer (HGT), but the long-term impacts of eukaryotic HGT in parasitic plants are largely unknown. Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through &gt;150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants. 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This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>Copyright ©2013 Zhang et al; licensee BioMed Central Ltd. 2013 Zhang et al; licensee BioMed Central Ltd.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c621t-ca3871b34e68b8a8dacac885dbd2507ec7a9ed17d2b707161b3b0fdb2a6082b93</citedby><cites>FETCH-LOGICAL-c621t-ca3871b34e68b8a8dacac885dbd2507ec7a9ed17d2b707161b3b0fdb2a6082b93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3601976/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3601976/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23425243$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Yeting</creatorcontrib><creatorcontrib>Fernandez-Aparicio, Monica</creatorcontrib><creatorcontrib>Wafula, Eric K</creatorcontrib><creatorcontrib>Das, Malay</creatorcontrib><creatorcontrib>Jiao, Yuannian</creatorcontrib><creatorcontrib>Wickett, Norman J</creatorcontrib><creatorcontrib>Honaas, Loren A</creatorcontrib><creatorcontrib>Ralph, Paula E</creatorcontrib><creatorcontrib>Wojciechowski, Martin F</creatorcontrib><creatorcontrib>Timko, Michael P</creatorcontrib><creatorcontrib>Yoder, John I</creatorcontrib><creatorcontrib>Westwood, James H</creatorcontrib><creatorcontrib>Depamphilis, Claude W</creatorcontrib><title>Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species</title><title>BMC evolutionary biology</title><addtitle>BMC Evol Biol</addtitle><description>Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. 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The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through &gt;150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. 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As a result of their direct plant-plant connections with their host plant, parasitic plants have special opportunities for horizontal gene transfer, the nonsexual transmission of genetic material across species boundaries. There is increasing evidence that parasitic plants have served as recipients and donors of horizontal gene transfer (HGT), but the long-term impacts of eukaryotic HGT in parasitic plants are largely unknown. Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through &gt;150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants. The HGT-derived albumins in Phelipanche represent a novel example of how plants can acquire genes from other plants via HGT that then go on to duplicate, evolve, and retain the specialized features required to perform a unique host-derived function.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>23425243</pmid><doi>10.1186/1471-2148-13-48</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
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subjects Amino Acid Sequence
Analysis
Bayes Theorem
Beans
Colleges & universities
Cuscuta
Cystine-Knot Miniproteins - genetics
DNA, Plant - genetics
Evolution, Molecular
Fabaceae - genetics
Gene Duplication
Gene Transfer, Horizontal
Genes
Genes, Plant
Genetic aspects
Genetic transformation
Legumes
Likelihood Functions
Mimosaceae
Molecular Sequence Data
Orobanchaceae
Orobanchaceae - genetics
Parasites
Parasitic plants
Phylogeny
Plant genetics
Protein Structure, Tertiary
Proteins
Sequence Alignment
Sequence Analysis, DNA
title Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species
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