Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species
Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. As a result of their direct plant-plant connections with their host plant, parasitic plants have special opport...
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Veröffentlicht in: | BMC evolutionary biology 2013-02, Vol.13 (1), p.48-48, Article 48 |
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creator | Zhang, Yeting Fernandez-Aparicio, Monica Wafula, Eric K Das, Malay Jiao, Yuannian Wickett, Norman J Honaas, Loren A Ralph, Paula E Wojciechowski, Martin F Timko, Michael P Yoder, John I Westwood, James H Depamphilis, Claude W |
description | Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. As a result of their direct plant-plant connections with their host plant, parasitic plants have special opportunities for horizontal gene transfer, the nonsexual transmission of genetic material across species boundaries. There is increasing evidence that parasitic plants have served as recipients and donors of horizontal gene transfer (HGT), but the long-term impacts of eukaryotic HGT in parasitic plants are largely unknown.
Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through >150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants.
The HGT-derived albumins in Phelipanche represent a novel example of how plants can acquire genes from other plants via HGT that then go on to duplicate, evolve, and retain the specialized features required to perform a unique host-derived function. |
doi_str_mv | 10.1186/1471-2148-13-48 |
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Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through >150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants.
The HGT-derived albumins in Phelipanche represent a novel example of how plants can acquire genes from other plants via HGT that then go on to duplicate, evolve, and retain the specialized features required to perform a unique host-derived function.</description><identifier>ISSN: 1471-2148</identifier><identifier>EISSN: 1471-2148</identifier><identifier>DOI: 10.1186/1471-2148-13-48</identifier><identifier>PMID: 23425243</identifier><language>eng</language><publisher>England: BioMed Central Ltd</publisher><subject>Amino Acid Sequence ; Analysis ; Bayes Theorem ; Beans ; Colleges & universities ; Cuscuta ; Cystine-Knot Miniproteins - genetics ; DNA, Plant - genetics ; Evolution, Molecular ; Fabaceae - genetics ; Gene Duplication ; Gene Transfer, Horizontal ; Genes ; Genes, Plant ; Genetic aspects ; Genetic transformation ; Legumes ; Likelihood Functions ; Mimosaceae ; Molecular Sequence Data ; Orobanchaceae ; Orobanchaceae - genetics ; Parasites ; Parasitic plants ; Phylogeny ; Plant genetics ; Protein Structure, Tertiary ; Proteins ; Sequence Alignment ; Sequence Analysis, DNA</subject><ispartof>BMC evolutionary biology, 2013-02, Vol.13 (1), p.48-48, Article 48</ispartof><rights>COPYRIGHT 2013 BioMed Central Ltd.</rights><rights>2013 Zhang et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>Copyright ©2013 Zhang et al; licensee BioMed Central Ltd. 2013 Zhang et al; licensee BioMed Central Ltd.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c621t-ca3871b34e68b8a8dacac885dbd2507ec7a9ed17d2b707161b3b0fdb2a6082b93</citedby><cites>FETCH-LOGICAL-c621t-ca3871b34e68b8a8dacac885dbd2507ec7a9ed17d2b707161b3b0fdb2a6082b93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3601976/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3601976/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23425243$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Yeting</creatorcontrib><creatorcontrib>Fernandez-Aparicio, Monica</creatorcontrib><creatorcontrib>Wafula, Eric K</creatorcontrib><creatorcontrib>Das, Malay</creatorcontrib><creatorcontrib>Jiao, Yuannian</creatorcontrib><creatorcontrib>Wickett, Norman J</creatorcontrib><creatorcontrib>Honaas, Loren A</creatorcontrib><creatorcontrib>Ralph, Paula E</creatorcontrib><creatorcontrib>Wojciechowski, Martin F</creatorcontrib><creatorcontrib>Timko, Michael P</creatorcontrib><creatorcontrib>Yoder, John I</creatorcontrib><creatorcontrib>Westwood, James H</creatorcontrib><creatorcontrib>Depamphilis, Claude W</creatorcontrib><title>Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species</title><title>BMC evolutionary biology</title><addtitle>BMC Evol Biol</addtitle><description>Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. As a result of their direct plant-plant connections with their host plant, parasitic plants have special opportunities for horizontal gene transfer, the nonsexual transmission of genetic material across species boundaries. There is increasing evidence that parasitic plants have served as recipients and donors of horizontal gene transfer (HGT), but the long-term impacts of eukaryotic HGT in parasitic plants are largely unknown.
Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through >150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants.
The HGT-derived albumins in Phelipanche represent a novel example of how plants can acquire genes from other plants via HGT that then go on to duplicate, evolve, and retain the specialized features required to perform a unique host-derived function.</description><subject>Amino Acid Sequence</subject><subject>Analysis</subject><subject>Bayes Theorem</subject><subject>Beans</subject><subject>Colleges & universities</subject><subject>Cuscuta</subject><subject>Cystine-Knot Miniproteins - genetics</subject><subject>DNA, Plant - genetics</subject><subject>Evolution, Molecular</subject><subject>Fabaceae - genetics</subject><subject>Gene Duplication</subject><subject>Gene Transfer, Horizontal</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Genetic aspects</subject><subject>Genetic transformation</subject><subject>Legumes</subject><subject>Likelihood Functions</subject><subject>Mimosaceae</subject><subject>Molecular Sequence Data</subject><subject>Orobanchaceae</subject><subject>Orobanchaceae - genetics</subject><subject>Parasites</subject><subject>Parasitic plants</subject><subject>Phylogeny</subject><subject>Plant genetics</subject><subject>Protein Structure, Tertiary</subject><subject>Proteins</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, 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of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species</title><author>Zhang, Yeting ; Fernandez-Aparicio, Monica ; Wafula, Eric K ; Das, Malay ; Jiao, Yuannian ; Wickett, Norman J ; Honaas, Loren A ; Ralph, Paula E ; Wojciechowski, Martin F ; Timko, Michael P ; Yoder, John I ; Westwood, James H ; Depamphilis, Claude W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c621t-ca3871b34e68b8a8dacac885dbd2507ec7a9ed17d2b707161b3b0fdb2a6082b93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Amino Acid Sequence</topic><topic>Analysis</topic><topic>Bayes Theorem</topic><topic>Beans</topic><topic>Colleges & universities</topic><topic>Cuscuta</topic><topic>Cystine-Knot Miniproteins - genetics</topic><topic>DNA, Plant - genetics</topic><topic>Evolution, Molecular</topic><topic>Fabaceae - genetics</topic><topic>Gene Duplication</topic><topic>Gene Transfer, Horizontal</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Genetic aspects</topic><topic>Genetic transformation</topic><topic>Legumes</topic><topic>Likelihood Functions</topic><topic>Mimosaceae</topic><topic>Molecular Sequence Data</topic><topic>Orobanchaceae</topic><topic>Orobanchaceae - genetics</topic><topic>Parasites</topic><topic>Parasitic plants</topic><topic>Phylogeny</topic><topic>Plant genetics</topic><topic>Protein Structure, Tertiary</topic><topic>Proteins</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Yeting</creatorcontrib><creatorcontrib>Fernandez-Aparicio, Monica</creatorcontrib><creatorcontrib>Wafula, Eric K</creatorcontrib><creatorcontrib>Das, Malay</creatorcontrib><creatorcontrib>Jiao, Yuannian</creatorcontrib><creatorcontrib>Wickett, Norman J</creatorcontrib><creatorcontrib>Honaas, Loren 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Biol</addtitle><date>2013-02-20</date><risdate>2013</risdate><volume>13</volume><issue>1</issue><spage>48</spage><epage>48</epage><pages>48-48</pages><artnum>48</artnum><issn>1471-2148</issn><eissn>1471-2148</eissn><abstract>Parasitic plants, represented by several thousand species of angiosperms, use modified structures known as haustoria to tap into photosynthetic host plants and extract nutrients and water. As a result of their direct plant-plant connections with their host plant, parasitic plants have special opportunities for horizontal gene transfer, the nonsexual transmission of genetic material across species boundaries. There is increasing evidence that parasitic plants have served as recipients and donors of horizontal gene transfer (HGT), but the long-term impacts of eukaryotic HGT in parasitic plants are largely unknown.
Here we show that a gene encoding albumin 1 KNOTTIN-like protein, closely related to the albumin 1 genes only known from papilionoid legumes, where they serve dual roles as food storage and insect toxin, was found in Phelipanche aegyptiaca and related parasitic species of family Orobanchaceae, and was likely acquired by a Phelipanche ancestor via HGT from a legume host based on phylogenetic analyses. The KNOTTINs are well known for their unique "disulfide through disulfide knot" structure and have been extensively studied in various contexts, including drug design. Genomic sequences from nine related parasite species were obtained, and 3D protein structure simulation tests and evolutionary constraint analyses were performed. The parasite gene we identified here retains the intron structure, six highly conserved cysteine residues necessary to form a KNOTTIN protein, and displays levels of purifying selection like those seen in legumes. The albumin 1 xenogene has evolved through >150 speciation events over ca. 16 million years, forming a small family of differentially expressed genes that may confer novel functions in the parasites. Moreover, further data show that a distantly related parasitic plant, Cuscuta, obtained two copies of albumin 1 KNOTTIN-like genes from legumes through a separate HGT event, suggesting that legume KNOTTIN structures have been repeatedly co-opted by parasitic plants.
The HGT-derived albumins in Phelipanche represent a novel example of how plants can acquire genes from other plants via HGT that then go on to duplicate, evolve, and retain the specialized features required to perform a unique host-derived function.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>23425243</pmid><doi>10.1186/1471-2148-13-48</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Analysis Bayes Theorem Beans Colleges & universities Cuscuta Cystine-Knot Miniproteins - genetics DNA, Plant - genetics Evolution, Molecular Fabaceae - genetics Gene Duplication Gene Transfer, Horizontal Genes Genes, Plant Genetic aspects Genetic transformation Legumes Likelihood Functions Mimosaceae Molecular Sequence Data Orobanchaceae Orobanchaceae - genetics Parasites Parasitic plants Phylogeny Plant genetics Protein Structure, Tertiary Proteins Sequence Alignment Sequence Analysis, DNA |
title | Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species |
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