Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213T)
Oscillibacter valericigenes is a mesophilic, strictly anaerobic bacterium belonging to the clostridial cluster IV. Strain Sjm18-20 T (=NBRC 101213 T =DSM 18026 T ) is the type strain of the species and represents the genus Oscillibacter Iino et al. 2007. It was isolated from the alimentary canal of...
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| Veröffentlicht in: | Standards in genomic sciences 2012-07, Vol.6 (3), p.406-414 |
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| creator | Katano, Yoko Fujinami, Shun Kawakoshi, Akatsuki Nakazawa, Hidekazu Oji, Syoko Iino, Takao Oguchi, Akio Ankai, Akiho Fukui, Shigehiro Terui, Yasuyuki Kamata, Sachi Harada, Takeshi Tanikawa, Satoshi Suzuki, Ken-ichiro Fujita, Nobuyuki |
| description | Oscillibacter valericigenes
is a mesophilic, strictly anaerobic bacterium belonging to the clostridial cluster IV. Strain Sjm18-20
T
(=NBRC 101213
T
=DSM 18026
T
) is the type strain of the species and represents the genus
Oscillibacter
Iino
et al.
2007. It was isolated from the alimentary canal of a Japanese corbicula clam (
Corbicula japonica
) collected on a seacoast in Shimane Prefecture in Japan. Phylogenetically, strain Sjm18-20
T
is closest to uncultured bacteria in digestive tracts, including the enriched cells thought to represent
Oscillospira guilliermondii
Chatton and Perard 1913. The isolated phylogenetic position and some distinct characteristics prompted us to determine the complete genome sequence. The 4,410,036 bp chromosome and the 60,586 bp plasmid were predicted to encode a total of 4,723 protein-coding genes. |
| doi_str_mv | 10.4056/sigs.2826118 |
| format | Article |
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is a mesophilic, strictly anaerobic bacterium belonging to the clostridial cluster IV. Strain Sjm18-20
T
(=NBRC 101213
T
=DSM 18026
T
) is the type strain of the species and represents the genus
Oscillibacter
Iino
et al.
2007. It was isolated from the alimentary canal of a Japanese corbicula clam (
Corbicula japonica
) collected on a seacoast in Shimane Prefecture in Japan. Phylogenetically, strain Sjm18-20
T
is closest to uncultured bacteria in digestive tracts, including the enriched cells thought to represent
Oscillospira guilliermondii
Chatton and Perard 1913. The isolated phylogenetic position and some distinct characteristics prompted us to determine the complete genome sequence. The 4,410,036 bp chromosome and the 60,586 bp plasmid were predicted to encode a total of 4,723 protein-coding genes.</description><identifier>ISSN: 1944-3277</identifier><identifier>EISSN: 1944-3277</identifier><identifier>DOI: 10.4056/sigs.2826118</identifier><identifier>PMID: 23408234</identifier><language>eng</language><publisher>Michigan State University</publisher><subject>Short Genome Reports</subject><ispartof>Standards in genomic sciences, 2012-07, Vol.6 (3), p.406-414</ispartof><rights>Copyright © retained by original authors. 2012 Katano et al.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c1738-d3315c2e75b248f426d40f6339f6d263b3403f0a3d73a51428e4388b9d63089b3</citedby><cites>FETCH-LOGICAL-c1738-d3315c2e75b248f426d40f6339f6d263b3403f0a3d73a51428e4388b9d63089b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558957/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558957/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27923,27924,53790,53792</link.rule.ids></links><search><creatorcontrib>Katano, Yoko</creatorcontrib><creatorcontrib>Fujinami, Shun</creatorcontrib><creatorcontrib>Kawakoshi, Akatsuki</creatorcontrib><creatorcontrib>Nakazawa, Hidekazu</creatorcontrib><creatorcontrib>Oji, Syoko</creatorcontrib><creatorcontrib>Iino, Takao</creatorcontrib><creatorcontrib>Oguchi, Akio</creatorcontrib><creatorcontrib>Ankai, Akiho</creatorcontrib><creatorcontrib>Fukui, Shigehiro</creatorcontrib><creatorcontrib>Terui, Yasuyuki</creatorcontrib><creatorcontrib>Kamata, Sachi</creatorcontrib><creatorcontrib>Harada, Takeshi</creatorcontrib><creatorcontrib>Tanikawa, Satoshi</creatorcontrib><creatorcontrib>Suzuki, Ken-ichiro</creatorcontrib><creatorcontrib>Fujita, Nobuyuki</creatorcontrib><title>Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213T)</title><title>Standards in genomic sciences</title><description>Oscillibacter valericigenes
is a mesophilic, strictly anaerobic bacterium belonging to the clostridial cluster IV. Strain Sjm18-20
T
(=NBRC 101213
T
=DSM 18026
T
) is the type strain of the species and represents the genus
Oscillibacter
Iino
et al.
2007. It was isolated from the alimentary canal of a Japanese corbicula clam (
Corbicula japonica
) collected on a seacoast in Shimane Prefecture in Japan. Phylogenetically, strain Sjm18-20
T
is closest to uncultured bacteria in digestive tracts, including the enriched cells thought to represent
Oscillospira guilliermondii
Chatton and Perard 1913. The isolated phylogenetic position and some distinct characteristics prompted us to determine the complete genome sequence. The 4,410,036 bp chromosome and the 60,586 bp plasmid were predicted to encode a total of 4,723 protein-coding genes.</description><subject>Short Genome Reports</subject><issn>1944-3277</issn><issn>1944-3277</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNpVkEtLAzEQgIMottTe_AE5Krg1yWR3k4OCLr6gWNR6DtnsbE3ZR920Bf-9Wyqic5gZmJmP4SPklLOJZHFyGfwiTIQSCefqgAy5ljICkaaHf_oBGYewZH2ATrXUx2QgQDLVpyF5ydp6VeEa6QKbtkYa8HODjUPalnQWnK8qn1u3xo5ubYWdd75fxEDfljVXkWBzenb1fPuaUc644DA_PyFHpa0Cjn_qiLzf382zx2g6e3jKbqaR4ymoqADgsROYxrmQqpQiKSQrEwBdJoVIIO9fhJJZKFKwMZdCoQSlcl0kwJTOYUSu99zVJq-xcNisO1uZVedr232Z1nrzf9L4D7NotwbiWOk47QEXe4Dr2hA6LH9vOTM7u2Zn1_zYhW_UGmmP</recordid><startdate>20120730</startdate><enddate>20120730</enddate><creator>Katano, Yoko</creator><creator>Fujinami, Shun</creator><creator>Kawakoshi, Akatsuki</creator><creator>Nakazawa, Hidekazu</creator><creator>Oji, Syoko</creator><creator>Iino, Takao</creator><creator>Oguchi, Akio</creator><creator>Ankai, Akiho</creator><creator>Fukui, Shigehiro</creator><creator>Terui, Yasuyuki</creator><creator>Kamata, Sachi</creator><creator>Harada, Takeshi</creator><creator>Tanikawa, Satoshi</creator><creator>Suzuki, Ken-ichiro</creator><creator>Fujita, Nobuyuki</creator><general>Michigan State University</general><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>20120730</creationdate><title>Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213T)</title><author>Katano, Yoko ; Fujinami, Shun ; Kawakoshi, Akatsuki ; Nakazawa, Hidekazu ; Oji, Syoko ; Iino, Takao ; Oguchi, Akio ; Ankai, Akiho ; Fukui, Shigehiro ; Terui, Yasuyuki ; Kamata, Sachi ; Harada, Takeshi ; Tanikawa, Satoshi ; Suzuki, Ken-ichiro ; Fujita, Nobuyuki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1738-d3315c2e75b248f426d40f6339f6d263b3403f0a3d73a51428e4388b9d63089b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Short Genome Reports</topic><toplevel>online_resources</toplevel><creatorcontrib>Katano, Yoko</creatorcontrib><creatorcontrib>Fujinami, Shun</creatorcontrib><creatorcontrib>Kawakoshi, Akatsuki</creatorcontrib><creatorcontrib>Nakazawa, Hidekazu</creatorcontrib><creatorcontrib>Oji, Syoko</creatorcontrib><creatorcontrib>Iino, Takao</creatorcontrib><creatorcontrib>Oguchi, Akio</creatorcontrib><creatorcontrib>Ankai, Akiho</creatorcontrib><creatorcontrib>Fukui, Shigehiro</creatorcontrib><creatorcontrib>Terui, Yasuyuki</creatorcontrib><creatorcontrib>Kamata, Sachi</creatorcontrib><creatorcontrib>Harada, Takeshi</creatorcontrib><creatorcontrib>Tanikawa, Satoshi</creatorcontrib><creatorcontrib>Suzuki, Ken-ichiro</creatorcontrib><creatorcontrib>Fujita, Nobuyuki</creatorcontrib><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Standards in genomic sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Katano, Yoko</au><au>Fujinami, Shun</au><au>Kawakoshi, Akatsuki</au><au>Nakazawa, Hidekazu</au><au>Oji, Syoko</au><au>Iino, Takao</au><au>Oguchi, Akio</au><au>Ankai, Akiho</au><au>Fukui, Shigehiro</au><au>Terui, Yasuyuki</au><au>Kamata, Sachi</au><au>Harada, Takeshi</au><au>Tanikawa, Satoshi</au><au>Suzuki, Ken-ichiro</au><au>Fujita, Nobuyuki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213T)</atitle><jtitle>Standards in genomic sciences</jtitle><date>2012-07-30</date><risdate>2012</risdate><volume>6</volume><issue>3</issue><spage>406</spage><epage>414</epage><pages>406-414</pages><issn>1944-3277</issn><eissn>1944-3277</eissn><abstract>Oscillibacter valericigenes
is a mesophilic, strictly anaerobic bacterium belonging to the clostridial cluster IV. Strain Sjm18-20
T
(=NBRC 101213
T
=DSM 18026
T
) is the type strain of the species and represents the genus
Oscillibacter
Iino
et al.
2007. It was isolated from the alimentary canal of a Japanese corbicula clam (
Corbicula japonica
) collected on a seacoast in Shimane Prefecture in Japan. Phylogenetically, strain Sjm18-20
T
is closest to uncultured bacteria in digestive tracts, including the enriched cells thought to represent
Oscillospira guilliermondii
Chatton and Perard 1913. The isolated phylogenetic position and some distinct characteristics prompted us to determine the complete genome sequence. The 4,410,036 bp chromosome and the 60,586 bp plasmid were predicted to encode a total of 4,723 protein-coding genes.</abstract><pub>Michigan State University</pub><pmid>23408234</pmid><doi>10.4056/sigs.2826118</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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| source | DOAJ Directory of Open Access Journals; PubMed Central Open Access; PubMed Central; Alma/SFX Local Collection |
| subjects | Short Genome Reports |
| title | Complete genome sequence of Oscillibacter valericigenes Sjm18-20T (=NBRC 101213T) |
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