AFLP assessment of genetic diversity among Indian Mucuna accessions
Amplified fragment length polymorphism (AFLP) marker was used to assess diversity in germplasm collection of Mucuna species which has gained tremendous attention in the recent past due to its promising nutritional, agronomic and medicinal attributes. Twenty five accessions comprising five species, c...
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Veröffentlicht in: | Physiology and molecular biology of plants 2011-04, Vol.17 (2), p.171-180 |
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creator | Sathyanarayana, N. Leelambika, M. Mahesh, S. Jaheer, Mahammad |
description | Amplified fragment length polymorphism (AFLP) marker was used to assess diversity in germplasm collection of
Mucuna
species which has gained tremendous attention in the recent past due to its promising nutritional, agronomic and medicinal attributes. Twenty five accessions comprising five species, collected from seven states of India were evaluated with twelve AFLP primer combinations that generated a total of 1,612 fragments with an average of 134 fragments per primer combination. The values of polymorphic information content (PIC), marker index (MI) and the resolving power (Rp) demonstrated the utility of the primer combinations used in the present study for discriminating the
Mucuna
accessions. UPGMA and Principal coordinate analysis (PCoA) of the genotypic data revealed clustering of accessions as per phenetic and genetic relationships. The Jaccard’s similarity coefficient values suggested good variability among the
M. pruriens
accessions indicating their utility in breeding programs. Molecular diversity presented in this study combined with the datasets on other morphological/agronomic traits will be highly useful for selecting appropriate accessions for plant improvement through conventional as well as molecular breeding approaches and for evolving suitable conservation strategies. |
doi_str_mv | 10.1007/s12298-011-0058-6 |
format | Article |
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Mucuna
species which has gained tremendous attention in the recent past due to its promising nutritional, agronomic and medicinal attributes. Twenty five accessions comprising five species, collected from seven states of India were evaluated with twelve AFLP primer combinations that generated a total of 1,612 fragments with an average of 134 fragments per primer combination. The values of polymorphic information content (PIC), marker index (MI) and the resolving power (Rp) demonstrated the utility of the primer combinations used in the present study for discriminating the
Mucuna
accessions. UPGMA and Principal coordinate analysis (PCoA) of the genotypic data revealed clustering of accessions as per phenetic and genetic relationships. The Jaccard’s similarity coefficient values suggested good variability among the
M. pruriens
accessions indicating their utility in breeding programs. Molecular diversity presented in this study combined with the datasets on other morphological/agronomic traits will be highly useful for selecting appropriate accessions for plant improvement through conventional as well as molecular breeding approaches and for evolving suitable conservation strategies.</description><identifier>ISSN: 0971-5894</identifier><identifier>EISSN: 0974-0430</identifier><identifier>DOI: 10.1007/s12298-011-0058-6</identifier><identifier>PMID: 23573007</identifier><language>eng</language><publisher>India: Springer-Verlag</publisher><subject>Biological and Medical Physics ; Biomedical and Life Sciences ; Biophysics ; Cell Biology ; Life Sciences ; Mucuna ; Plant Physiology ; Plant Sciences ; Research Article</subject><ispartof>Physiology and molecular biology of plants, 2011-04, Vol.17 (2), p.171-180</ispartof><rights>Prof. H.S. Srivastava Foundation for Science and Society 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3896-3aec27a87e8d75f303d72581344ef265ce91d08b44cb9c9d17256fc07290fd8b3</citedby><cites>FETCH-LOGICAL-c3896-3aec27a87e8d75f303d72581344ef265ce91d08b44cb9c9d17256fc07290fd8b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3550546/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3550546/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,41488,42557,51319,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23573007$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sathyanarayana, N.</creatorcontrib><creatorcontrib>Leelambika, M.</creatorcontrib><creatorcontrib>Mahesh, S.</creatorcontrib><creatorcontrib>Jaheer, Mahammad</creatorcontrib><title>AFLP assessment of genetic diversity among Indian Mucuna accessions</title><title>Physiology and molecular biology of plants</title><addtitle>Physiol Mol Biol Plants</addtitle><addtitle>Physiol Mol Biol Plants</addtitle><description>Amplified fragment length polymorphism (AFLP) marker was used to assess diversity in germplasm collection of
Mucuna
species which has gained tremendous attention in the recent past due to its promising nutritional, agronomic and medicinal attributes. Twenty five accessions comprising five species, collected from seven states of India were evaluated with twelve AFLP primer combinations that generated a total of 1,612 fragments with an average of 134 fragments per primer combination. The values of polymorphic information content (PIC), marker index (MI) and the resolving power (Rp) demonstrated the utility of the primer combinations used in the present study for discriminating the
Mucuna
accessions. UPGMA and Principal coordinate analysis (PCoA) of the genotypic data revealed clustering of accessions as per phenetic and genetic relationships. The Jaccard’s similarity coefficient values suggested good variability among the
M. pruriens
accessions indicating their utility in breeding programs. Molecular diversity presented in this study combined with the datasets on other morphological/agronomic traits will be highly useful for selecting appropriate accessions for plant improvement through conventional as well as molecular breeding approaches and for evolving suitable conservation strategies.</description><subject>Biological and Medical Physics</subject><subject>Biomedical and Life Sciences</subject><subject>Biophysics</subject><subject>Cell Biology</subject><subject>Life Sciences</subject><subject>Mucuna</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Research Article</subject><issn>0971-5894</issn><issn>0974-0430</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><recordid>eNp9kU1LAzEQhoMofv8AL7I3vaxOvjbJRZDiF1T0oOeQZrM10k006Qr-e1Nbi148JTDPPMzMi9ARhjMMIM4zJkTJGjCuAbismw20C0qwGhiFze8_rrlUbAft5fwK0FAm8DbaIZQLWgy7aHR5PX6sTM4u596FeRW7auqCm3tbtf7Dpeznn5XpY5hWd6H1JlT3gx2CqYy1pcfHkA_QVmdm2R2u3n30fH31NLqtxw83d6PLcW2pVE1NjbNEGCmcbAXvKNBWEC4xZcx1pOHWKdyCnDBmJ8qqFpdq01kQREHXygndRxdL79sw6V1ry7jJzPRb8r1Jnzoar_9Wgn_R0_ihKefAWVMEJytBiu-Dy3Pd-2zdbGaCi0PWilCsuMAL8vRfElPSYFauyQuKl6hNMefkuvVAGPQiJr2MSZeY9CImvdAf_95k3fGTSwHIEsilFKYu6dc4pFCu-4_1CzOfnUo</recordid><startdate>201104</startdate><enddate>201104</enddate><creator>Sathyanarayana, N.</creator><creator>Leelambika, M.</creator><creator>Mahesh, S.</creator><creator>Jaheer, Mahammad</creator><general>Springer-Verlag</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>201104</creationdate><title>AFLP assessment of genetic diversity among Indian Mucuna accessions</title><author>Sathyanarayana, N. ; Leelambika, M. ; Mahesh, S. ; Jaheer, Mahammad</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3896-3aec27a87e8d75f303d72581344ef265ce91d08b44cb9c9d17256fc07290fd8b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Biological and Medical Physics</topic><topic>Biomedical and Life Sciences</topic><topic>Biophysics</topic><topic>Cell Biology</topic><topic>Life Sciences</topic><topic>Mucuna</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Research Article</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sathyanarayana, N.</creatorcontrib><creatorcontrib>Leelambika, M.</creatorcontrib><creatorcontrib>Mahesh, S.</creatorcontrib><creatorcontrib>Jaheer, Mahammad</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Physiology and molecular biology of plants</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sathyanarayana, N.</au><au>Leelambika, M.</au><au>Mahesh, S.</au><au>Jaheer, Mahammad</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>AFLP assessment of genetic diversity among Indian Mucuna accessions</atitle><jtitle>Physiology and molecular biology of plants</jtitle><stitle>Physiol Mol Biol Plants</stitle><addtitle>Physiol Mol Biol Plants</addtitle><date>2011-04</date><risdate>2011</risdate><volume>17</volume><issue>2</issue><spage>171</spage><epage>180</epage><pages>171-180</pages><issn>0971-5894</issn><eissn>0974-0430</eissn><abstract>Amplified fragment length polymorphism (AFLP) marker was used to assess diversity in germplasm collection of
Mucuna
species which has gained tremendous attention in the recent past due to its promising nutritional, agronomic and medicinal attributes. Twenty five accessions comprising five species, collected from seven states of India were evaluated with twelve AFLP primer combinations that generated a total of 1,612 fragments with an average of 134 fragments per primer combination. The values of polymorphic information content (PIC), marker index (MI) and the resolving power (Rp) demonstrated the utility of the primer combinations used in the present study for discriminating the
Mucuna
accessions. UPGMA and Principal coordinate analysis (PCoA) of the genotypic data revealed clustering of accessions as per phenetic and genetic relationships. The Jaccard’s similarity coefficient values suggested good variability among the
M. pruriens
accessions indicating their utility in breeding programs. Molecular diversity presented in this study combined with the datasets on other morphological/agronomic traits will be highly useful for selecting appropriate accessions for plant improvement through conventional as well as molecular breeding approaches and for evolving suitable conservation strategies.</abstract><cop>India</cop><pub>Springer-Verlag</pub><pmid>23573007</pmid><doi>10.1007/s12298-011-0058-6</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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source | SpringerLink Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Biological and Medical Physics Biomedical and Life Sciences Biophysics Cell Biology Life Sciences Mucuna Plant Physiology Plant Sciences Research Article |
title | AFLP assessment of genetic diversity among Indian Mucuna accessions |
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