The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity
Plant ferritins have some unique structural and functional features. Most of these features can be related to the plant‐specific “extension peptide” (EP), which exists in the N‐terminus of the mature region of a plant ferritin. Recent crystallographic analysis of a plant ferritin revealed the struct...
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Veröffentlicht in: | Protein science 2012-06, Vol.21 (6), p.786-796 |
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description | Plant ferritins have some unique structural and functional features. Most of these features can be related to the plant‐specific “extension peptide” (EP), which exists in the N‐terminus of the mature region of a plant ferritin. Recent crystallographic analysis of a plant ferritin revealed the structure of the EP, however, two points remain unclear: (i) whether the structures of well‐conserved EP of plant ferritins are common in all plants, and (ii) whether the EP truly contributes to the shell stability of the plant ferritin oligomer. To clarify these matters, we have cloned a green‐plant‐type ferritin cDNA from a green alga, Ulva pertusa, and investigated its crystal structure. Ulva pertusa ferritin (UpFER) has a plant‐ferritin‐specific extension peptide composed of 28 amino acid residues. In the crystal structure of UpFER, the EP lay on and interacted with the neighboring threefold symmetry‐related subunit. The amino acid residues involved in the interaction were very highly conserved among plant ferritins. The EPs masked the hydrophobic pockets on the ferritin shell surface by lying on them, and this made the ferritin oligomer more hydrophilic. Furthermore, differential scanning calorimetric analysis of the native and its EP‐deletion mutant suggested that the EP contributed to the thermal stability of the plant ferritin shell. Thus, the shell stability and surface hydrophobicity of plant ferritin were controlled by the presence or absence of the plant‐ferritin‐specific EP. This regulation can account for those processes such as shell stability, degradation, and association of plant ferritin, which are significantly related to iron utilization in plants.
PDB Code(s): 3VNX |
doi_str_mv | 10.1002/pro.2061 |
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PDB Code(s): 3VNX</description><identifier>ISSN: 0961-8368</identifier><identifier>EISSN: 1469-896X</identifier><identifier>DOI: 10.1002/pro.2061</identifier><identifier>PMID: 22419613</identifier><identifier>CODEN: PRCIEI</identifier><language>eng</language><publisher>Hoboken: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>Amino Acid Sequence ; Amino acids ; assembly ; Cloning, Molecular ; Crystal structure ; Crystallography, X-Ray ; extension peptide ; ferritin ; Ferritins - chemistry ; Ferritins - genetics ; Gene Deletion ; Hydrophobic and Hydrophilic Interactions ; Models, Molecular ; Molecular Sequence Data ; oligomer ; Peptides ; Plant Proteins - chemistry ; Plant Proteins - genetics ; processing ; Protein Stability ; Sequence Alignment ; stability ; surface hydrophobicity ; Ulva - chemistry ; Ulva - genetics</subject><ispartof>Protein science, 2012-06, Vol.21 (6), p.786-796</ispartof><rights>Copyright © 2012 The Protein Society</rights><rights>Copyright © 2012 The Protein Society.</rights><rights>Copyright © 2012 The Protein Society 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5041-c4c4ff795215dafe0e865bb68b91fb8e02655d1dd5e3ad4ef79e351d6777be5e3</citedby><cites>FETCH-LOGICAL-c5041-c4c4ff795215dafe0e865bb68b91fb8e02655d1dd5e3ad4ef79e351d6777be5e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3403414/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3403414/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,1411,1427,27901,27902,45550,45551,46384,46808,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22419613$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Masuda, Taro</creatorcontrib><creatorcontrib>Morimoto, Shin‐Ichiro</creatorcontrib><creatorcontrib>Mikami, Bunzo</creatorcontrib><creatorcontrib>Toyohara, Haruhiko</creatorcontrib><title>The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity</title><title>Protein science</title><addtitle>Protein Sci</addtitle><description>Plant ferritins have some unique structural and functional features. Most of these features can be related to the plant‐specific “extension peptide” (EP), which exists in the N‐terminus of the mature region of a plant ferritin. Recent crystallographic analysis of a plant ferritin revealed the structure of the EP, however, two points remain unclear: (i) whether the structures of well‐conserved EP of plant ferritins are common in all plants, and (ii) whether the EP truly contributes to the shell stability of the plant ferritin oligomer. To clarify these matters, we have cloned a green‐plant‐type ferritin cDNA from a green alga, Ulva pertusa, and investigated its crystal structure. Ulva pertusa ferritin (UpFER) has a plant‐ferritin‐specific extension peptide composed of 28 amino acid residues. In the crystal structure of UpFER, the EP lay on and interacted with the neighboring threefold symmetry‐related subunit. The amino acid residues involved in the interaction were very highly conserved among plant ferritins. The EPs masked the hydrophobic pockets on the ferritin shell surface by lying on them, and this made the ferritin oligomer more hydrophilic. Furthermore, differential scanning calorimetric analysis of the native and its EP‐deletion mutant suggested that the EP contributed to the thermal stability of the plant ferritin shell. Thus, the shell stability and surface hydrophobicity of plant ferritin were controlled by the presence or absence of the plant‐ferritin‐specific EP. This regulation can account for those processes such as shell stability, degradation, and association of plant ferritin, which are significantly related to iron utilization in plants.
PDB Code(s): 3VNX</description><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>assembly</subject><subject>Cloning, Molecular</subject><subject>Crystal structure</subject><subject>Crystallography, X-Ray</subject><subject>extension peptide</subject><subject>ferritin</subject><subject>Ferritins - chemistry</subject><subject>Ferritins - genetics</subject><subject>Gene Deletion</subject><subject>Hydrophobic and Hydrophilic Interactions</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>oligomer</subject><subject>Peptides</subject><subject>Plant Proteins - chemistry</subject><subject>Plant Proteins - genetics</subject><subject>processing</subject><subject>Protein Stability</subject><subject>Sequence Alignment</subject><subject>stability</subject><subject>surface hydrophobicity</subject><subject>Ulva - chemistry</subject><subject>Ulva - genetics</subject><issn>0961-8368</issn><issn>1469-896X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kc1q3DAUhUVoyUx-IE9QBN1046lkybK9CZSQNoGBlJJAdkKyrmoFj-VIctp5-2oySWgXXYmr83Hu4R6EzihZUULKz1Pwq5IIeoCWlIu2aFpx_w4tSSto0TDRLNBRjA-EEE5LdogWZclp1tgShdseMPxOMEbnRzzBlJwB7C2eBjUmbCEEl9yIbfAbHEHhAVKaO8CdH1Nwek4QcfI49jAMOCal3eDSFqvR4DgHqzLab03wU--167J0gt5bNUQ4fXmP0d3Xy9uLq2J98-364su66Kqcs-h4x62t26qklVEWCDSi0lo0uqVWN0BKUVWGGlMBU4ZDRoFV1Ii6rjXkz2N0vvedZr0B00HOqwY5BbdRYSu9cvJfZXS9_OmfJOOEccqzwccXg-AfZ4hJPvg5jDmzpLUQTb5hzTL1aU91wccYwL5toETu2smzl7t2Mvrh70Rv4GsdGSj2wC83wPa_RvL7j5tnwz8avZ0x</recordid><startdate>201206</startdate><enddate>201206</enddate><creator>Masuda, Taro</creator><creator>Morimoto, Shin‐Ichiro</creator><creator>Mikami, Bunzo</creator><creator>Toyohara, Haruhiko</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7T5</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>201206</creationdate><title>The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity</title><author>Masuda, Taro ; Morimoto, Shin‐Ichiro ; Mikami, Bunzo ; Toyohara, Haruhiko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5041-c4c4ff795215dafe0e865bb68b91fb8e02655d1dd5e3ad4ef79e351d6777be5e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Amino Acid Sequence</topic><topic>Amino acids</topic><topic>assembly</topic><topic>Cloning, Molecular</topic><topic>Crystal structure</topic><topic>Crystallography, X-Ray</topic><topic>extension peptide</topic><topic>ferritin</topic><topic>Ferritins - chemistry</topic><topic>Ferritins - genetics</topic><topic>Gene Deletion</topic><topic>Hydrophobic and Hydrophilic Interactions</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>oligomer</topic><topic>Peptides</topic><topic>Plant Proteins - chemistry</topic><topic>Plant Proteins - genetics</topic><topic>processing</topic><topic>Protein Stability</topic><topic>Sequence Alignment</topic><topic>stability</topic><topic>surface hydrophobicity</topic><topic>Ulva - chemistry</topic><topic>Ulva - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Masuda, Taro</creatorcontrib><creatorcontrib>Morimoto, Shin‐Ichiro</creatorcontrib><creatorcontrib>Mikami, Bunzo</creatorcontrib><creatorcontrib>Toyohara, Haruhiko</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Immunology Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Protein science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Masuda, Taro</au><au>Morimoto, Shin‐Ichiro</au><au>Mikami, Bunzo</au><au>Toyohara, Haruhiko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity</atitle><jtitle>Protein science</jtitle><addtitle>Protein Sci</addtitle><date>2012-06</date><risdate>2012</risdate><volume>21</volume><issue>6</issue><spage>786</spage><epage>796</epage><pages>786-796</pages><issn>0961-8368</issn><eissn>1469-896X</eissn><coden>PRCIEI</coden><abstract>Plant ferritins have some unique structural and functional features. Most of these features can be related to the plant‐specific “extension peptide” (EP), which exists in the N‐terminus of the mature region of a plant ferritin. Recent crystallographic analysis of a plant ferritin revealed the structure of the EP, however, two points remain unclear: (i) whether the structures of well‐conserved EP of plant ferritins are common in all plants, and (ii) whether the EP truly contributes to the shell stability of the plant ferritin oligomer. To clarify these matters, we have cloned a green‐plant‐type ferritin cDNA from a green alga, Ulva pertusa, and investigated its crystal structure. Ulva pertusa ferritin (UpFER) has a plant‐ferritin‐specific extension peptide composed of 28 amino acid residues. In the crystal structure of UpFER, the EP lay on and interacted with the neighboring threefold symmetry‐related subunit. The amino acid residues involved in the interaction were very highly conserved among plant ferritins. The EPs masked the hydrophobic pockets on the ferritin shell surface by lying on them, and this made the ferritin oligomer more hydrophilic. Furthermore, differential scanning calorimetric analysis of the native and its EP‐deletion mutant suggested that the EP contributed to the thermal stability of the plant ferritin shell. Thus, the shell stability and surface hydrophobicity of plant ferritin were controlled by the presence or absence of the plant‐ferritin‐specific EP. This regulation can account for those processes such as shell stability, degradation, and association of plant ferritin, which are significantly related to iron utilization in plants.
PDB Code(s): 3VNX</abstract><cop>Hoboken</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>22419613</pmid><doi>10.1002/pro.2061</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Amino acids assembly Cloning, Molecular Crystal structure Crystallography, X-Ray extension peptide ferritin Ferritins - chemistry Ferritins - genetics Gene Deletion Hydrophobic and Hydrophilic Interactions Models, Molecular Molecular Sequence Data oligomer Peptides Plant Proteins - chemistry Plant Proteins - genetics processing Protein Stability Sequence Alignment stability surface hydrophobicity Ulva - chemistry Ulva - genetics |
title | The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity |
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