Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)
In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this app...
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| Veröffentlicht in: | Archives of virology 2011-08, Vol.156 (8), p.1397-1413 |
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| creator | Matthijnssens, Jelle Ciarlet, Max McDonald, Sarah M. Attoui, Houssam Bányai, Krisztián Brister, J. Rodney Buesa, Javier Esona, Mathew D. Estes, Mary K. Gentsch, Jon R. Iturriza-Gómara, Miren Johne, Reimar Kirkwood, Carl D. Martella, Vito Mertens, Peter P. C. Nakagomi, Osamu Parreño, Viviana Rahman, Mustafizur Ruggeri, Franco M. Saif, Linda J. Santos, Norma Steyer, Andrej Taniguchi, Koki Patton, John T. Desselberger, Ulrich Van Ranst, Marc |
| description | In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data. |
| doi_str_mv | 10.1007/s00705-011-1006-z |
| format | Article |
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Rodney ; Buesa, Javier ; Esona, Mathew D. ; Estes, Mary K. ; Gentsch, Jon R. ; Iturriza-Gómara, Miren ; Johne, Reimar ; Kirkwood, Carl D. ; Martella, Vito ; Mertens, Peter P. C. ; Nakagomi, Osamu ; Parreño, Viviana ; Rahman, Mustafizur ; Ruggeri, Franco M. ; Saif, Linda J. ; Santos, Norma ; Steyer, Andrej ; Taniguchi, Koki ; Patton, John T. ; Desselberger, Ulrich ; Van Ranst, Marc</creator><creatorcontrib>Matthijnssens, Jelle ; Ciarlet, Max ; McDonald, Sarah M. ; Attoui, Houssam ; Bányai, Krisztián ; Brister, J. Rodney ; Buesa, Javier ; Esona, Mathew D. ; Estes, Mary K. ; Gentsch, Jon R. ; Iturriza-Gómara, Miren ; Johne, Reimar ; Kirkwood, Carl D. ; Martella, Vito ; Mertens, Peter P. C. ; Nakagomi, Osamu ; Parreño, Viviana ; Rahman, Mustafizur ; Ruggeri, Franco M. ; Saif, Linda J. ; Santos, Norma ; Steyer, Andrej ; Taniguchi, Koki ; Patton, John T. ; Desselberger, Ulrich ; Van Ranst, Marc</creatorcontrib><description>In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-011-1006-z</identifier><identifier>PMID: 21597953</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; chickens ; Chiroptera ; classification ; common names ; conception ; cows ; Fundamental and applied biological sciences. Psychology ; genes ; genetics ; Genome, Viral ; Genomes ; Genotype ; horses ; Humans ; Immunology ; Infections ; Infectious Diseases ; Lama guanicoe ; Medical Microbiology ; Medical research ; Medicine ; mice ; Microbiology ; Miscellaneous ; National Center for Biotechnology Information ; nucleotide sequences ; Original Article ; Phasianidae ; pheasants ; Proteins ; Public health ; R&D ; Research & development ; RNA polymerase ; Rotavirus ; Rotavirus - classification ; Rotavirus - genetics ; Species Specificity ; sugars ; swine ; Terminology as Topic ; turkeys ; Virology ; Viruses ; Working groups</subject><ispartof>Archives of virology, 2011-08, Vol.156 (8), p.1397-1413</ispartof><rights>Springer-Verlag 2011</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c629t-c374484e9028f20f0bc15422568a4e791a3e4cc1fe3610068ed8067bc75b80f43</citedby><cites>FETCH-LOGICAL-c629t-c374484e9028f20f0bc15422568a4e791a3e4cc1fe3610068ed8067bc75b80f43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-011-1006-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-011-1006-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,776,780,881,27903,27904,41467,42536,51297</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24404417$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21597953$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Matthijnssens, Jelle</creatorcontrib><creatorcontrib>Ciarlet, Max</creatorcontrib><creatorcontrib>McDonald, Sarah M.</creatorcontrib><creatorcontrib>Attoui, Houssam</creatorcontrib><creatorcontrib>Bányai, Krisztián</creatorcontrib><creatorcontrib>Brister, J. Rodney</creatorcontrib><creatorcontrib>Buesa, Javier</creatorcontrib><creatorcontrib>Esona, Mathew D.</creatorcontrib><creatorcontrib>Estes, Mary K.</creatorcontrib><creatorcontrib>Gentsch, Jon R.</creatorcontrib><creatorcontrib>Iturriza-Gómara, Miren</creatorcontrib><creatorcontrib>Johne, Reimar</creatorcontrib><creatorcontrib>Kirkwood, Carl D.</creatorcontrib><creatorcontrib>Martella, Vito</creatorcontrib><creatorcontrib>Mertens, Peter P. C.</creatorcontrib><creatorcontrib>Nakagomi, Osamu</creatorcontrib><creatorcontrib>Parreño, Viviana</creatorcontrib><creatorcontrib>Rahman, Mustafizur</creatorcontrib><creatorcontrib>Ruggeri, Franco M.</creatorcontrib><creatorcontrib>Saif, Linda J.</creatorcontrib><creatorcontrib>Santos, Norma</creatorcontrib><creatorcontrib>Steyer, Andrej</creatorcontrib><creatorcontrib>Taniguchi, Koki</creatorcontrib><creatorcontrib>Patton, John T.</creatorcontrib><creatorcontrib>Desselberger, Ulrich</creatorcontrib><creatorcontrib>Van Ranst, Marc</creatorcontrib><title>Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data.</description><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>chickens</subject><subject>Chiroptera</subject><subject>classification</subject><subject>common names</subject><subject>conception</subject><subject>cows</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genes</subject><subject>genetics</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Genotype</subject><subject>horses</subject><subject>Humans</subject><subject>Immunology</subject><subject>Infections</subject><subject>Infectious Diseases</subject><subject>Lama guanicoe</subject><subject>Medical Microbiology</subject><subject>Medical research</subject><subject>Medicine</subject><subject>mice</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>National Center for Biotechnology Information</subject><subject>nucleotide sequences</subject><subject>Original Article</subject><subject>Phasianidae</subject><subject>pheasants</subject><subject>Proteins</subject><subject>Public health</subject><subject>R&D</subject><subject>Research & development</subject><subject>RNA polymerase</subject><subject>Rotavirus</subject><subject>Rotavirus - classification</subject><subject>Rotavirus - genetics</subject><subject>Species Specificity</subject><subject>sugars</subject><subject>swine</subject><subject>Terminology as Topic</subject><subject>turkeys</subject><subject>Virology</subject><subject>Viruses</subject><subject>Working groups</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkl1rFDEUhoModq3-AG8kCMV6MZpMMvm4EcpS10JBKJZehkw22abOJGMyU9j--mbddWsFxZuEk_Oc93zkAPAaow8YIf4xlwM1FcK4Kjar7p6AGaakrgSX4imYIYJoJRgSB-BFzjcIlQfSPAcHNW4klw2ZAX8ZvIup9-MaRgdTHPWtT1OGeUzaBxhib4Pp9DglC4cUh5jtErZrOF5beLGn553O2Ttv9OhjgFcxffdhBRcpTgM8vphfLd6_BM-c7rJ9tbsPweXn02_zL9X518XZ_OS8MqyWY2UIp1RQK1EtXI0cag1uaF03TGhqucSaWGoMdpawTdPCLgVivDW8aQVylByCT1vdYWp7uzQ2lE46NSTf67RWUXv12BP8tVrFW0WIFFKKIvBuJ5Dij8nmUfU-G9t1Otg4ZSVEGSvHmP4HiXCpUmw0j_9JYsokLrmZLOjbP9CbOKVQRqbKt1LBG8wLhLeQSTHnZN2-P4zUZjfUdjdU2Y2NzdRdiXnz-2D2Eb-WoQBHO0BnozuXdDA-P3CUIkp_Jq-3XC6usLLpocK_Z78HMjrSNg</recordid><startdate>20110801</startdate><enddate>20110801</enddate><creator>Matthijnssens, Jelle</creator><creator>Ciarlet, Max</creator><creator>McDonald, Sarah M.</creator><creator>Attoui, Houssam</creator><creator>Bányai, Krisztián</creator><creator>Brister, J. 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C.</creatorcontrib><creatorcontrib>Nakagomi, Osamu</creatorcontrib><creatorcontrib>Parreño, Viviana</creatorcontrib><creatorcontrib>Rahman, Mustafizur</creatorcontrib><creatorcontrib>Ruggeri, Franco M.</creatorcontrib><creatorcontrib>Saif, Linda J.</creatorcontrib><creatorcontrib>Santos, Norma</creatorcontrib><creatorcontrib>Steyer, Andrej</creatorcontrib><creatorcontrib>Taniguchi, Koki</creatorcontrib><creatorcontrib>Patton, John T.</creatorcontrib><creatorcontrib>Desselberger, Ulrich</creatorcontrib><creatorcontrib>Van Ranst, Marc</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Matthijnssens, Jelle</au><au>Ciarlet, Max</au><au>McDonald, Sarah M.</au><au>Attoui, Houssam</au><au>Bányai, Krisztián</au><au>Brister, J. Rodney</au><au>Buesa, Javier</au><au>Esona, Mathew D.</au><au>Estes, Mary K.</au><au>Gentsch, Jon R.</au><au>Iturriza-Gómara, Miren</au><au>Johne, Reimar</au><au>Kirkwood, Carl D.</au><au>Martella, Vito</au><au>Mertens, Peter P. C.</au><au>Nakagomi, Osamu</au><au>Parreño, Viviana</au><au>Rahman, Mustafizur</au><au>Ruggeri, Franco M.</au><au>Saif, Linda J.</au><au>Santos, Norma</au><au>Steyer, Andrej</au><au>Taniguchi, Koki</au><au>Patton, John T.</au><au>Desselberger, Ulrich</au><au>Van Ranst, Marc</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2011-08-01</date><risdate>2011</risdate><volume>156</volume><issue>8</issue><spage>1397</spage><epage>1413</epage><pages>1397-1413</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific genotype to each of the 11 genome segments of a particular RV strain according to established nucleotide percent cutoff values. Using this approach, the genome of individual RV strains are given the complete descriptor of Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx. The Rotavirus Classification Working Group (RCWG) was formed by scientists in the field to maintain, evaluate and develop the RV genotype classification system, in particular to aid in the designation of new genotypes. Since its conception, the group has ratified 51 new genotypes: as of April 2011, new genotypes for VP7 (G20-G27), VP4 (P[28]-P[35]), VP6 (I12-I16), VP1 (R5-R9), VP2 (C6-C9), VP3 (M7-M8), NSP1 (A15-A16), NSP2 (N6-N9), NSP3 (T8-T12), NSP4 (E12-E14) and NSP5/6 (H7-H11) have been defined for RV strains recovered from humans, cows, pigs, horses, mice, South American camelids (guanaco), chickens, turkeys, pheasants, bats and a sugar glider. With increasing numbers of complete RV genome sequences becoming available, a standardized RV strain nomenclature system is needed, and the RCWG proposes that individual RV strains are named as follows: RV group/species of origin/country of identification/common name/year of identification/G- and P-type. In collaboration with the National Center for Biotechnology Information (NCBI), the RCWG is also working on developing a RV-specific resource for the deposition of nucleotide sequences. This resource will provide useful information regarding RV strains, including, but not limited to, the individual gene genotypes and epidemiological and clinical information. Together, the proposed nomenclature system and the NCBI RV resource will offer highly useful tools for investigators to search for, retrieve, and analyze the ever-growing volume of RV genomic data.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>21597953</pmid><doi>10.1007/s00705-011-1006-z</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2011-08, Vol.156 (8), p.1397-1413 |
| issn | 0304-8608 1432-8798 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3398998 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Animals Biological and medical sciences Biomedical and Life Sciences Biomedicine chickens Chiroptera classification common names conception cows Fundamental and applied biological sciences. Psychology genes genetics Genome, Viral Genomes Genotype horses Humans Immunology Infections Infectious Diseases Lama guanicoe Medical Microbiology Medical research Medicine mice Microbiology Miscellaneous National Center for Biotechnology Information nucleotide sequences Original Article Phasianidae pheasants Proteins Public health R&D Research & development RNA polymerase Rotavirus Rotavirus - classification Rotavirus - genetics Species Specificity sugars swine Terminology as Topic turkeys Virology Viruses Working groups |
| title | Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG) |
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