Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers

Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Statistics in medicine 2011-01, Vol.30 (1), p.11-21
Hauptverfasser: Pencina, Michael J., D'Agostino Sr, Ralph B., Steyerberg, Ewout W.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 21
container_issue 1
container_start_page 11
container_title Statistics in medicine
container_volume 30
creator Pencina, Michael J.
D'Agostino Sr, Ralph B.
Steyerberg, Ewout W.
description Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a simple intuitive way of quantifying improvement offered by new markers and has been gaining popularity among researchers. However, several aspects of the NRI have not been studied in sufficient detail. In this paper we propose a prospective formulation for the NRI which offers immediate application to survival and competing risk data as well as allows for easy weighting with observed or perceived costs. We address the issue of the number and choice of categories and their impact on NRI. We contrast category‐based NRI with one which is category‐free and conclude that NRIs cannot be compared across studies unless they are defined in the same manner. We discuss the impact of differing event rates when models are applied to different samples or definitions of events and durations of follow‐up vary between studies. We also show how NRI can be applied to case–control data. The concepts presented in the paper are illustrated in a Framingham Heart Study example. In conclusion, NRI can be readily calculated for survival, competing risk, and case–control data, is more objective and comparable across studies using the category‐free version, and can include relative costs for classifications. We recommend that researchers clearly define and justify the choices they make when choosing NRI for their application. Copyright © 2010 John Wiley & Sons, Ltd.
doi_str_mv 10.1002/sim.4085
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3341973</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2243537981</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5015-bc5f3c4dde65a0f0a61cf25f2452c2bc5898404f2135dd62e52bf63d8c93adc23</originalsourceid><addsrcrecordid>eNp1kVtrFDEYhoModrsV_AUyeKM3U3Ocmb0RylLbQluRegBvQjbzRVMzkzXfTA__vll3XFTwIgTyPjy84SXkOaOHjFL-Bn13KGmjHpEZo4u6pFw1j8mM8rouq5qpPbKPeE0pY4rXT8keZ5zKfGbEHt8N0KOPPRbRFT0MRQIbDKJ33pohB4Xv1ineQAf9UFgT7Bh-vWMxxKIDg2OCYkRwY-gBJ81tsfKxM-kHJDwgT5wJCM-me04-vTv-uDwtz9-fnC2PzkurKFPlyionrGxbqJShjpqKWceV41Jxy3PaLBpJpeNMqLatOCi-cpVoG7sQprVczMnbrXc9rjpobe6bTNDr5HORex2N138nvf-uv8UbLYRki1pkwatJkOLPEXDQnUcLIZge4oi64VypiuYCc_LyH_I6jqnPv9ONVJVkNd_oXm8hmyJiArerwqje7KbzbnqzW0Zf_Fl9B_4eKgPlFrj1Ae7_K9JXZxeTcOI9DnC34_MguqpFrfSXyxNdLdmH0-Xnr7oRD9wTs7s</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>845641723</pqid></control><display><type>article</type><title>Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers</title><source>MEDLINE</source><source>Wiley Online Library All Journals</source><creator>Pencina, Michael J. ; D'Agostino Sr, Ralph B. ; Steyerberg, Ewout W.</creator><creatorcontrib>Pencina, Michael J. ; D'Agostino Sr, Ralph B. ; Steyerberg, Ewout W.</creatorcontrib><description>Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a simple intuitive way of quantifying improvement offered by new markers and has been gaining popularity among researchers. However, several aspects of the NRI have not been studied in sufficient detail. In this paper we propose a prospective formulation for the NRI which offers immediate application to survival and competing risk data as well as allows for easy weighting with observed or perceived costs. We address the issue of the number and choice of categories and their impact on NRI. We contrast category‐based NRI with one which is category‐free and conclude that NRIs cannot be compared across studies unless they are defined in the same manner. We discuss the impact of differing event rates when models are applied to different samples or definitions of events and durations of follow‐up vary between studies. We also show how NRI can be applied to case–control data. The concepts presented in the paper are illustrated in a Framingham Heart Study example. In conclusion, NRI can be readily calculated for survival, competing risk, and case–control data, is more objective and comparable across studies using the category‐free version, and can include relative costs for classifications. We recommend that researchers clearly define and justify the choices they make when choosing NRI for their application. Copyright © 2010 John Wiley &amp; Sons, Ltd.</description><identifier>ISSN: 0277-6715</identifier><identifier>EISSN: 1097-0258</identifier><identifier>DOI: 10.1002/sim.4085</identifier><identifier>PMID: 21204120</identifier><identifier>CODEN: SMEDDA</identifier><language>eng</language><publisher>Chichester, UK: John Wiley &amp; Sons, Ltd</publisher><subject>Adult ; Aged ; Algorithms ; biomarker ; Biomarkers ; Biomarkers - analysis ; Case-Control Studies ; Classification ; Coronary Disease - epidemiology ; Coronary Disease - metabolism ; discrimination ; Female ; Humans ; Kaplan-Meier Estimate ; Longitudinal Studies ; Male ; Medical research ; Medical statistics ; Middle Aged ; model performance ; Models, Biological ; Models, Statistical ; NRI ; Risk Assessment - methods ; risk prediction</subject><ispartof>Statistics in medicine, 2011-01, Vol.30 (1), p.11-21</ispartof><rights>Copyright © 2010 John Wiley &amp; Sons, Ltd.</rights><rights>Copyright John Wiley and Sons, Limited Jan 15, 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c5015-bc5f3c4dde65a0f0a61cf25f2452c2bc5898404f2135dd62e52bf63d8c93adc23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fsim.4085$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fsim.4085$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21204120$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pencina, Michael J.</creatorcontrib><creatorcontrib>D'Agostino Sr, Ralph B.</creatorcontrib><creatorcontrib>Steyerberg, Ewout W.</creatorcontrib><title>Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers</title><title>Statistics in medicine</title><addtitle>Statist. Med</addtitle><description>Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a simple intuitive way of quantifying improvement offered by new markers and has been gaining popularity among researchers. However, several aspects of the NRI have not been studied in sufficient detail. In this paper we propose a prospective formulation for the NRI which offers immediate application to survival and competing risk data as well as allows for easy weighting with observed or perceived costs. We address the issue of the number and choice of categories and their impact on NRI. We contrast category‐based NRI with one which is category‐free and conclude that NRIs cannot be compared across studies unless they are defined in the same manner. We discuss the impact of differing event rates when models are applied to different samples or definitions of events and durations of follow‐up vary between studies. We also show how NRI can be applied to case–control data. The concepts presented in the paper are illustrated in a Framingham Heart Study example. In conclusion, NRI can be readily calculated for survival, competing risk, and case–control data, is more objective and comparable across studies using the category‐free version, and can include relative costs for classifications. We recommend that researchers clearly define and justify the choices they make when choosing NRI for their application. Copyright © 2010 John Wiley &amp; Sons, Ltd.</description><subject>Adult</subject><subject>Aged</subject><subject>Algorithms</subject><subject>biomarker</subject><subject>Biomarkers</subject><subject>Biomarkers - analysis</subject><subject>Case-Control Studies</subject><subject>Classification</subject><subject>Coronary Disease - epidemiology</subject><subject>Coronary Disease - metabolism</subject><subject>discrimination</subject><subject>Female</subject><subject>Humans</subject><subject>Kaplan-Meier Estimate</subject><subject>Longitudinal Studies</subject><subject>Male</subject><subject>Medical research</subject><subject>Medical statistics</subject><subject>Middle Aged</subject><subject>model performance</subject><subject>Models, Biological</subject><subject>Models, Statistical</subject><subject>NRI</subject><subject>Risk Assessment - methods</subject><subject>risk prediction</subject><issn>0277-6715</issn><issn>1097-0258</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kVtrFDEYhoModrsV_AUyeKM3U3Ocmb0RylLbQluRegBvQjbzRVMzkzXfTA__vll3XFTwIgTyPjy84SXkOaOHjFL-Bn13KGmjHpEZo4u6pFw1j8mM8rouq5qpPbKPeE0pY4rXT8keZ5zKfGbEHt8N0KOPPRbRFT0MRQIbDKJ33pohB4Xv1ineQAf9UFgT7Bh-vWMxxKIDg2OCYkRwY-gBJ81tsfKxM-kHJDwgT5wJCM-me04-vTv-uDwtz9-fnC2PzkurKFPlyionrGxbqJShjpqKWceV41Jxy3PaLBpJpeNMqLatOCi-cpVoG7sQprVczMnbrXc9rjpobe6bTNDr5HORex2N138nvf-uv8UbLYRki1pkwatJkOLPEXDQnUcLIZge4oi64VypiuYCc_LyH_I6jqnPv9ONVJVkNd_oXm8hmyJiArerwqje7KbzbnqzW0Zf_Fl9B_4eKgPlFrj1Ae7_K9JXZxeTcOI9DnC34_MguqpFrfSXyxNdLdmH0-Xnr7oRD9wTs7s</recordid><startdate>20110115</startdate><enddate>20110115</enddate><creator>Pencina, Michael J.</creator><creator>D'Agostino Sr, Ralph B.</creator><creator>Steyerberg, Ewout W.</creator><general>John Wiley &amp; Sons, Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20110115</creationdate><title>Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers</title><author>Pencina, Michael J. ; D'Agostino Sr, Ralph B. ; Steyerberg, Ewout W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5015-bc5f3c4dde65a0f0a61cf25f2452c2bc5898404f2135dd62e52bf63d8c93adc23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Algorithms</topic><topic>biomarker</topic><topic>Biomarkers</topic><topic>Biomarkers - analysis</topic><topic>Case-Control Studies</topic><topic>Classification</topic><topic>Coronary Disease - epidemiology</topic><topic>Coronary Disease - metabolism</topic><topic>discrimination</topic><topic>Female</topic><topic>Humans</topic><topic>Kaplan-Meier Estimate</topic><topic>Longitudinal Studies</topic><topic>Male</topic><topic>Medical research</topic><topic>Medical statistics</topic><topic>Middle Aged</topic><topic>model performance</topic><topic>Models, Biological</topic><topic>Models, Statistical</topic><topic>NRI</topic><topic>Risk Assessment - methods</topic><topic>risk prediction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pencina, Michael J.</creatorcontrib><creatorcontrib>D'Agostino Sr, Ralph B.</creatorcontrib><creatorcontrib>Steyerberg, Ewout W.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Statistics in medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pencina, Michael J.</au><au>D'Agostino Sr, Ralph B.</au><au>Steyerberg, Ewout W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers</atitle><jtitle>Statistics in medicine</jtitle><addtitle>Statist. Med</addtitle><date>2011-01-15</date><risdate>2011</risdate><volume>30</volume><issue>1</issue><spage>11</spage><epage>21</epage><pages>11-21</pages><issn>0277-6715</issn><eissn>1097-0258</eissn><coden>SMEDDA</coden><abstract>Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a simple intuitive way of quantifying improvement offered by new markers and has been gaining popularity among researchers. However, several aspects of the NRI have not been studied in sufficient detail. In this paper we propose a prospective formulation for the NRI which offers immediate application to survival and competing risk data as well as allows for easy weighting with observed or perceived costs. We address the issue of the number and choice of categories and their impact on NRI. We contrast category‐based NRI with one which is category‐free and conclude that NRIs cannot be compared across studies unless they are defined in the same manner. We discuss the impact of differing event rates when models are applied to different samples or definitions of events and durations of follow‐up vary between studies. We also show how NRI can be applied to case–control data. The concepts presented in the paper are illustrated in a Framingham Heart Study example. In conclusion, NRI can be readily calculated for survival, competing risk, and case–control data, is more objective and comparable across studies using the category‐free version, and can include relative costs for classifications. We recommend that researchers clearly define and justify the choices they make when choosing NRI for their application. Copyright © 2010 John Wiley &amp; Sons, Ltd.</abstract><cop>Chichester, UK</cop><pub>John Wiley &amp; Sons, Ltd</pub><pmid>21204120</pmid><doi>10.1002/sim.4085</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0277-6715
ispartof Statistics in medicine, 2011-01, Vol.30 (1), p.11-21
issn 0277-6715
1097-0258
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3341973
source MEDLINE; Wiley Online Library All Journals
subjects Adult
Aged
Algorithms
biomarker
Biomarkers
Biomarkers - analysis
Case-Control Studies
Classification
Coronary Disease - epidemiology
Coronary Disease - metabolism
discrimination
Female
Humans
Kaplan-Meier Estimate
Longitudinal Studies
Male
Medical research
Medical statistics
Middle Aged
model performance
Models, Biological
Models, Statistical
NRI
Risk Assessment - methods
risk prediction
title Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-06T10%3A17%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Extensions%20of%20net%20reclassification%20improvement%20calculations%20to%20measure%20usefulness%20of%20new%20biomarkers&rft.jtitle=Statistics%20in%20medicine&rft.au=Pencina,%20Michael%20J.&rft.date=2011-01-15&rft.volume=30&rft.issue=1&rft.spage=11&rft.epage=21&rft.pages=11-21&rft.issn=0277-6715&rft.eissn=1097-0258&rft.coden=SMEDDA&rft_id=info:doi/10.1002/sim.4085&rft_dat=%3Cproquest_pubme%3E2243537981%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=845641723&rft_id=info:pmid/21204120&rfr_iscdi=true