Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase
X‐ray radiation induces two main effects at metal centres contained in protein crystals: radiation‐induced reduction and radiolysis and a resulting decrease in metal occupancy. In blue multicopper oxidases (BMCOs), the geometry of the active centres and the metal‐to‐ligand distances change depending...
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Veröffentlicht in: | Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 2012-05, Vol.68 (5), p.564-577 |
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description | X‐ray radiation induces two main effects at metal centres contained in protein crystals: radiation‐induced reduction and radiolysis and a resulting decrease in metal occupancy. In blue multicopper oxidases (BMCOs), the geometry of the active centres and the metal‐to‐ligand distances change depending on the oxidation states of the Cu atoms, suggesting that these alterations are catalytically relevant to the binding, activation and reduction of O2. In this work, the X‐ray‐determined three‐dimensional structure of laccase from the basidiomycete Coriolopsis gallica (Cg L), a high catalytic potential BMCO, is described. By combining spectroscopic techniques (UV–Vis, EPR and XAS) and X‐ray crystallography, structural changes at and around the active copper centres were related to pH and absorbed X‐ray dose (energy deposited per unit mass). Depletion of two of the four active Cu atoms as well as low occupancies of the remaining Cu atoms, together with different conformations of the metal centres, were observed at both acidic pH and high absorbed dose, correlating with more reduced states of the active coppers. These observations provide additional evidence to support the role of flexibility of copper sites during O2 reduction. This study supports previous observations indicating that interpretations regarding redox state and metal coordination need to take radiation effects explicitly into account. |
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In blue multicopper oxidases (BMCOs), the geometry of the active centres and the metal‐to‐ligand distances change depending on the oxidation states of the Cu atoms, suggesting that these alterations are catalytically relevant to the binding, activation and reduction of O2. In this work, the X‐ray‐determined three‐dimensional structure of laccase from the basidiomycete Coriolopsis gallica (Cg L), a high catalytic potential BMCO, is described. By combining spectroscopic techniques (UV–Vis, EPR and XAS) and X‐ray crystallography, structural changes at and around the active copper centres were related to pH and absorbed X‐ray dose (energy deposited per unit mass). Depletion of two of the four active Cu atoms as well as low occupancies of the remaining Cu atoms, together with different conformations of the metal centres, were observed at both acidic pH and high absorbed dose, correlating with more reduced states of the active coppers. These observations provide additional evidence to support the role of flexibility of copper sites during O2 reduction. This study supports previous observations indicating that interpretations regarding redox state and metal coordination need to take radiation effects explicitly into account.</description><identifier>ISSN: 1399-0047</identifier><identifier>ISSN: 0907-4449</identifier><identifier>EISSN: 1399-0047</identifier><identifier>DOI: 10.1107/S0907444912005343</identifier><identifier>PMID: 22525754</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Basidiomycetes ; Basidiomycota - enzymology ; bioelectrocatalysis ; blue multicopper oxidases ; Catalytic Domain - radiation effects ; Copper - chemistry ; copper reduction ; Crystallization ; Crystallography, X-Ray ; dioxygen ; Electron Spin Resonance Spectroscopy ; fungal laccases ; Laccase - chemistry ; MicroPIXE ; Models, Molecular ; O2 reduction ; Oxidation-Reduction ; Oxygen - chemistry ; Protein Conformation - radiation effects ; protein electrochemistry ; Proteins ; radiation damage ; radiolysis ; Research Papers ; Spectrophotometry, Ultraviolet ; X-ray-induced reduction ; X-Rays</subject><ispartof>Acta crystallographica. 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Section D, Biological crystallography.</title><addtitle>Acta Cryst. D</addtitle><description>X‐ray radiation induces two main effects at metal centres contained in protein crystals: radiation‐induced reduction and radiolysis and a resulting decrease in metal occupancy. In blue multicopper oxidases (BMCOs), the geometry of the active centres and the metal‐to‐ligand distances change depending on the oxidation states of the Cu atoms, suggesting that these alterations are catalytically relevant to the binding, activation and reduction of O2. In this work, the X‐ray‐determined three‐dimensional structure of laccase from the basidiomycete Coriolopsis gallica (Cg L), a high catalytic potential BMCO, is described. By combining spectroscopic techniques (UV–Vis, EPR and XAS) and X‐ray crystallography, structural changes at and around the active copper centres were related to pH and absorbed X‐ray dose (energy deposited per unit mass). Depletion of two of the four active Cu atoms as well as low occupancies of the remaining Cu atoms, together with different conformations of the metal centres, were observed at both acidic pH and high absorbed dose, correlating with more reduced states of the active coppers. These observations provide additional evidence to support the role of flexibility of copper sites during O2 reduction. This study supports previous observations indicating that interpretations regarding redox state and metal coordination need to take radiation effects explicitly into account.</description><subject>Basidiomycetes</subject><subject>Basidiomycota - enzymology</subject><subject>bioelectrocatalysis</subject><subject>blue multicopper oxidases</subject><subject>Catalytic Domain - radiation effects</subject><subject>Copper - chemistry</subject><subject>copper reduction</subject><subject>Crystallization</subject><subject>Crystallography, X-Ray</subject><subject>dioxygen</subject><subject>Electron Spin Resonance Spectroscopy</subject><subject>fungal laccases</subject><subject>Laccase - chemistry</subject><subject>MicroPIXE</subject><subject>Models, Molecular</subject><subject>O2 reduction</subject><subject>Oxidation-Reduction</subject><subject>Oxygen - chemistry</subject><subject>Protein Conformation - radiation effects</subject><subject>protein electrochemistry</subject><subject>Proteins</subject><subject>radiation damage</subject><subject>radiolysis</subject><subject>Research Papers</subject><subject>Spectrophotometry, Ultraviolet</subject><subject>X-ray-induced reduction</subject><subject>X-Rays</subject><issn>1399-0047</issn><issn>0907-4449</issn><issn>1399-0047</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkstu1DAUhiMEoqXwAGyQBRs2AV_iOGaBVLXQQQywKNeV5dgnHZeMPdgOdF6Bp8bDlFGBBayO5fP9_7noVNVdgh8RgsXjUyyxaJpGEooxZw27Vu0TJmWNcSOuX3nvVbdSOscYU8rEzWqPUk654M1-9f00x8nkKeoRmYX2Z5CQ0VMCi_o1ito6nV3wtfN2MuUzQombH6S9_ZkP4zq59ATlBSAYBjAZhQF9rKNeI92nEPsisyEBckWEhsmflVrLaczOhNUKIgoXzuoEt6sbgx4T3LmMB9W758_eHs3q-ZuTF0eH89q0Dcb1AJy11oLWGJrWai4YHYjtqO6kxY02PRMEE9P3WpLODJQKSaEXYKghHQd2UD3d-q6mfgnWgM9lerWKbqnjWgXt1O8Z7xbqLHxVjDFOu7YY3N8ahJSdSsZlMAsTvC-zK4JbyVtWoIeXVWL4MkHKaumSgXHUHsKUCkepxC1n8j9QLEthKZuCPvgDPQ9T9GVdipT2CGecbxokW8rEkFKEYTccwWpzOeqvyymae1e3slP8OpUCdFvgmxth_W9Hdfjp-NWMY46LtN5KXcpwsZPq-Fm1ggmuPrw-Ue9fSn48p3M1Yz8AE0nfRw</recordid><startdate>201205</startdate><enddate>201205</enddate><creator>De la Mora, Eugenio</creator><creator>Lovett, Janet E.</creator><creator>Blanford, Christopher F.</creator><creator>Garman, Elspeth F.</creator><creator>Valderrama, Brenda</creator><creator>Rudino-Pinera, Enrique</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7SP</scope><scope>7SR</scope><scope>7TK</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>H8D</scope><scope>JG9</scope><scope>L7M</scope><scope>7X8</scope><scope>M7N</scope><scope>OTOTI</scope><scope>5PM</scope></search><sort><creationdate>201205</creationdate><title>Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase</title><author>De la Mora, Eugenio ; Lovett, Janet E. ; Blanford, Christopher F. ; Garman, Elspeth F. ; Valderrama, Brenda ; Rudino-Pinera, Enrique</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6400-fe536ddeaa0e46da5732f1d82a89d04acb37101cbba918cf22792eb7ec2c185e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Basidiomycetes</topic><topic>Basidiomycota - enzymology</topic><topic>bioelectrocatalysis</topic><topic>blue multicopper oxidases</topic><topic>Catalytic Domain - radiation effects</topic><topic>Copper - chemistry</topic><topic>copper reduction</topic><topic>Crystallization</topic><topic>Crystallography, X-Ray</topic><topic>dioxygen</topic><topic>Electron Spin Resonance Spectroscopy</topic><topic>fungal laccases</topic><topic>Laccase - chemistry</topic><topic>MicroPIXE</topic><topic>Models, Molecular</topic><topic>O2 reduction</topic><topic>Oxidation-Reduction</topic><topic>Oxygen - chemistry</topic><topic>Protein Conformation - radiation effects</topic><topic>protein electrochemistry</topic><topic>Proteins</topic><topic>radiation damage</topic><topic>radiolysis</topic><topic>Research Papers</topic><topic>Spectrophotometry, Ultraviolet</topic><topic>X-ray-induced reduction</topic><topic>X-Rays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>De la Mora, Eugenio</creatorcontrib><creatorcontrib>Lovett, Janet E.</creatorcontrib><creatorcontrib>Blanford, Christopher F.</creatorcontrib><creatorcontrib>Garman, Elspeth F.</creatorcontrib><creatorcontrib>Valderrama, Brenda</creatorcontrib><creatorcontrib>Rudino-Pinera, Enrique</creatorcontrib><creatorcontrib>BROOKHAVEN NATIONAL LABORATORY (BNL)</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. Section D, Biological crystallography.</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>De la Mora, Eugenio</au><au>Lovett, Janet E.</au><au>Blanford, Christopher F.</au><au>Garman, Elspeth F.</au><au>Valderrama, Brenda</au><au>Rudino-Pinera, Enrique</au><aucorp>BROOKHAVEN NATIONAL LABORATORY (BNL)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase</atitle><jtitle>Acta crystallographica. Section D, Biological crystallography.</jtitle><addtitle>Acta Cryst. D</addtitle><date>2012-05</date><risdate>2012</risdate><volume>68</volume><issue>5</issue><spage>564</spage><epage>577</epage><pages>564-577</pages><issn>1399-0047</issn><issn>0907-4449</issn><eissn>1399-0047</eissn><abstract>X‐ray radiation induces two main effects at metal centres contained in protein crystals: radiation‐induced reduction and radiolysis and a resulting decrease in metal occupancy. In blue multicopper oxidases (BMCOs), the geometry of the active centres and the metal‐to‐ligand distances change depending on the oxidation states of the Cu atoms, suggesting that these alterations are catalytically relevant to the binding, activation and reduction of O2. In this work, the X‐ray‐determined three‐dimensional structure of laccase from the basidiomycete Coriolopsis gallica (Cg L), a high catalytic potential BMCO, is described. By combining spectroscopic techniques (UV–Vis, EPR and XAS) and X‐ray crystallography, structural changes at and around the active copper centres were related to pH and absorbed X‐ray dose (energy deposited per unit mass). Depletion of two of the four active Cu atoms as well as low occupancies of the remaining Cu atoms, together with different conformations of the metal centres, were observed at both acidic pH and high absorbed dose, correlating with more reduced states of the active coppers. These observations provide additional evidence to support the role of flexibility of copper sites during O2 reduction. This study supports previous observations indicating that interpretations regarding redox state and metal coordination need to take radiation effects explicitly into account.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>22525754</pmid><doi>10.1107/S0907444912005343</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Basidiomycetes Basidiomycota - enzymology bioelectrocatalysis blue multicopper oxidases Catalytic Domain - radiation effects Copper - chemistry copper reduction Crystallization Crystallography, X-Ray dioxygen Electron Spin Resonance Spectroscopy fungal laccases Laccase - chemistry MicroPIXE Models, Molecular O2 reduction Oxidation-Reduction Oxygen - chemistry Protein Conformation - radiation effects protein electrochemistry Proteins radiation damage radiolysis Research Papers Spectrophotometry, Ultraviolet X-ray-induced reduction X-Rays |
title | Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase |
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