Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice
The highly conserved plant microRNA, miR156, is an essential regulator for plant development. In Arabidopsis (Arabidopsis ihaliana), miR156 modulates phase changing through its temporal expression in the shoot. In contrast to the gradual decrease over time in the shoot (or whole plant), we found tha...
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| Veröffentlicht in: | Plant physiology (Bethesda) 2012-03, Vol.158 (3), p.1382-1394 |
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| creator | Xie, Kabin Shen, Jianqiang Hou, Xin Yao, Jialing Li, Xianghua Xiao, Jinghua Xiong, Lizhong |
| description | The highly conserved plant microRNA, miR156, is an essential regulator for plant development. In Arabidopsis (Arabidopsis ihaliana), miR156 modulates phase changing through its temporal expression in the shoot. In contrast to the gradual decrease over time in the shoot (or whole plant), we found that the miR156 level in rice (Oryza sativa) gradually increased from young leaf to old leaf after the juvenile stage. However, the miR156-targeted rice SQUAMOSA-promoter binding-like (SPL) transcription factors were either dominantly expressed in young leaves or not changed over the time of leaf growth. A comparison of the transcriptomes of early-emerged old leaves and later-emerged young leaves from wild-type and miR156 overexpression (miR156-OE) rice lines found that expression levels of 3,008 genes were affected in miR156-OE leaves. Analysis of temporal expression changes of these genes suggested that miR156 regulates gene expression in a leaf age-dependent manner, and miR156-OE attenuated the temporal changes of 2,660 genes. Interestingly, seven conserved plant microRNAs also showed temporal changes from young to old leaves, and miR156-OE also attenuated the temporal changes of six microRNAs. Consistent with global gene expression changes, miR156-OE plants resulted in dramatic changes including precocious leaf maturation and rapid leaf/tiller initiation. Our results indicate that another gradient of miR156 is present over time, a gradual increase during leaf growth, in addition to the gradual decrease during shoot growth. Gradually increased miR156 expression in the leaf might be essential for regulating the temporal expression of genes involved in leaf development. |
| doi_str_mv | 10.1104/pp.111.190488 |
| format | Article |
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In Arabidopsis (Arabidopsis ihaliana), miR156 modulates phase changing through its temporal expression in the shoot. In contrast to the gradual decrease over time in the shoot (or whole plant), we found that the miR156 level in rice (Oryza sativa) gradually increased from young leaf to old leaf after the juvenile stage. However, the miR156-targeted rice SQUAMOSA-promoter binding-like (SPL) transcription factors were either dominantly expressed in young leaves or not changed over the time of leaf growth. A comparison of the transcriptomes of early-emerged old leaves and later-emerged young leaves from wild-type and miR156 overexpression (miR156-OE) rice lines found that expression levels of 3,008 genes were affected in miR156-OE leaves. Analysis of temporal expression changes of these genes suggested that miR156 regulates gene expression in a leaf age-dependent manner, and miR156-OE attenuated the temporal changes of 2,660 genes. Interestingly, seven conserved plant microRNAs also showed temporal changes from young to old leaves, and miR156-OE also attenuated the temporal changes of six microRNAs. Consistent with global gene expression changes, miR156-OE plants resulted in dramatic changes including precocious leaf maturation and rapid leaf/tiller initiation. Our results indicate that another gradient of miR156 is present over time, a gradual increase during leaf growth, in addition to the gradual decrease during shoot growth. Gradually increased miR156 expression in the leaf might be essential for regulating the temporal expression of genes involved in leaf development.</description><identifier>ISSN: 0032-0889</identifier><identifier>ISSN: 1532-2548</identifier><identifier>EISSN: 1532-2548</identifier><identifier>DOI: 10.1104/pp.111.190488</identifier><identifier>PMID: 22271747</identifier><identifier>CODEN: PPHYA5</identifier><language>eng</language><publisher>Rockville, MD: American Society of Plant Biologists</publisher><subject>Arabidopsis thaliana ; Biological and medical sciences ; Developmental biology ; Fundamental and applied biological sciences. Psychology ; gene expression ; Gene Expression Profiling ; gene expression regulation ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Plant ; Genes ; Genes, Plant ; genetics ; growth & development ; Leaf development ; Leaves ; metabolism ; MicroRNA ; MicroRNAs ; MicroRNAs - genetics ; MicroRNAs - metabolism ; Microscopy, Electron, Scanning ; Oryza ; Oryza - genetics ; Oryza - growth & development ; Oryza - metabolism ; Oryza sativa ; phase transition ; Plant cells ; Plant Epidermis ; Plant Epidermis - genetics ; Plant Epidermis - metabolism ; Plant Epidermis - ultrastructure ; Plant Leaves ; Plant Leaves - genetics ; Plant Leaves - growth & development ; Plant Leaves - metabolism ; Plant physiology and development ; Plant Proteins ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Shoots ; Plant Shoots - genetics ; Plant Shoots - growth & development ; Plant Shoots - metabolism ; Plants ; Plants, Genetically Modified ; Plants, Genetically Modified - genetics ; Plants, Genetically Modified - growth & development ; Plants, Genetically Modified - metabolism ; Rice ; RNA ; RNA, Plant ; RNA, Plant - genetics ; RNA, Plant - metabolism ; shoots ; SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION ; temporal variation ; Tillers ; Time Factors ; transcription factors ; Transcription Factors - genetics ; Transcription Factors - metabolism ; Transcriptome ; ultrastructure</subject><ispartof>Plant physiology (Bethesda), 2012-03, Vol.158 (3), p.1382-1394</ispartof><rights>2012 American Society of Plant Biologists</rights><rights>2015 INIST-CNRS</rights><rights>2012 American Society of Plant Biologists. All rights reserved. 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c570t-b57a0a73d16c1fcffae32382928c7552df6a6d3b5b49374ebbb2df77cc31c3733</citedby><cites>FETCH-LOGICAL-c570t-b57a0a73d16c1fcffae32382928c7552df6a6d3b5b49374ebbb2df77cc31c3733</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/41435333$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/41435333$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25619134$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22271747$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xie, Kabin</creatorcontrib><creatorcontrib>Shen, Jianqiang</creatorcontrib><creatorcontrib>Hou, Xin</creatorcontrib><creatorcontrib>Yao, Jialing</creatorcontrib><creatorcontrib>Li, Xianghua</creatorcontrib><creatorcontrib>Xiao, Jinghua</creatorcontrib><creatorcontrib>Xiong, Lizhong</creatorcontrib><title>Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice</title><title>Plant physiology (Bethesda)</title><addtitle>Plant Physiol</addtitle><description>The highly conserved plant microRNA, miR156, is an essential regulator for plant development. In Arabidopsis (Arabidopsis ihaliana), miR156 modulates phase changing through its temporal expression in the shoot. In contrast to the gradual decrease over time in the shoot (or whole plant), we found that the miR156 level in rice (Oryza sativa) gradually increased from young leaf to old leaf after the juvenile stage. However, the miR156-targeted rice SQUAMOSA-promoter binding-like (SPL) transcription factors were either dominantly expressed in young leaves or not changed over the time of leaf growth. A comparison of the transcriptomes of early-emerged old leaves and later-emerged young leaves from wild-type and miR156 overexpression (miR156-OE) rice lines found that expression levels of 3,008 genes were affected in miR156-OE leaves. Analysis of temporal expression changes of these genes suggested that miR156 regulates gene expression in a leaf age-dependent manner, and miR156-OE attenuated the temporal changes of 2,660 genes. Interestingly, seven conserved plant microRNAs also showed temporal changes from young to old leaves, and miR156-OE also attenuated the temporal changes of six microRNAs. Consistent with global gene expression changes, miR156-OE plants resulted in dramatic changes including precocious leaf maturation and rapid leaf/tiller initiation. Our results indicate that another gradient of miR156 is present over time, a gradual increase during leaf growth, in addition to the gradual decrease during shoot growth. Gradually increased miR156 expression in the leaf might be essential for regulating the temporal expression of genes involved in leaf development.</description><subject>Arabidopsis thaliana</subject><subject>Biological and medical sciences</subject><subject>Developmental biology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gene expression</subject><subject>Gene Expression Profiling</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Developmental</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>genetics</subject><subject>growth & development</subject><subject>Leaf development</subject><subject>Leaves</subject><subject>metabolism</subject><subject>MicroRNA</subject><subject>MicroRNAs</subject><subject>MicroRNAs - genetics</subject><subject>MicroRNAs - metabolism</subject><subject>Microscopy, Electron, Scanning</subject><subject>Oryza</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Oryza - metabolism</subject><subject>Oryza sativa</subject><subject>phase transition</subject><subject>Plant cells</subject><subject>Plant Epidermis</subject><subject>Plant Epidermis - genetics</subject><subject>Plant Epidermis - metabolism</subject><subject>Plant Epidermis - ultrastructure</subject><subject>Plant Leaves</subject><subject>Plant Leaves - genetics</subject><subject>Plant Leaves - growth & development</subject><subject>Plant Leaves - metabolism</subject><subject>Plant physiology and development</subject><subject>Plant Proteins</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Shoots</subject><subject>Plant Shoots - genetics</subject><subject>Plant Shoots - growth & development</subject><subject>Plant Shoots - metabolism</subject><subject>Plants</subject><subject>Plants, Genetically Modified</subject><subject>Plants, Genetically Modified - genetics</subject><subject>Plants, Genetically Modified - growth & development</subject><subject>Plants, Genetically Modified - metabolism</subject><subject>Rice</subject><subject>RNA</subject><subject>RNA, Plant</subject><subject>RNA, Plant - genetics</subject><subject>RNA, Plant - metabolism</subject><subject>shoots</subject><subject>SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION</subject><subject>temporal variation</subject><subject>Tillers</subject><subject>Time Factors</subject><subject>transcription factors</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><subject>Transcriptome</subject><subject>ultrastructure</subject><issn>0032-0889</issn><issn>1532-2548</issn><issn>1532-2548</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0c2L1DAUAPAgijuuHj0quYheuuazSS-CjOu4MCgM6zmk6etsljapSbvof2-WGUe96OmFvB-P94HQc0ouKCXi7TSVSC9oQ4TWD9CKSs4qJoV-iFaElDfRujlDT3K-JYRQTsVjdMYYU1QJtUJpk2y32AFfBZfAZsCxx6PfUVnjHeyXwc6Q8TWMU0xFXX6fEuTsY8DrGxv2JVf852WEFJeMNxDKT7ckH_Z4C7bHH-AOhjiNEGbsA955B0_Ro94OGZ4d4zn6-vHyev2p2n7ZXK3fbysnFZmrVipLrOIdrR3tXd9b4Ixr1jDtlJSs62tbd7yVrWi4EtC2bflTyjlOHVecn6N3h7rT0o7QudJCGcFMyY82_TDRevN3Jvgbs493hrOGMnlf4PWxQIrfFsizGX12MAw2QJnWNKzWSgvZFPnmn5KKsnommaj_TwnThElZs0KrA3Up5pygP_VOibk_vpmmEqk5HL_4l38OfNK_rl3AqyOw2dmhTzY4n387WdOGclHci4O7zXNMp7yggpe1cP4TEg7Bew</recordid><startdate>20120301</startdate><enddate>20120301</enddate><creator>Xie, Kabin</creator><creator>Shen, Jianqiang</creator><creator>Hou, Xin</creator><creator>Yao, Jialing</creator><creator>Li, Xianghua</creator><creator>Xiao, Jinghua</creator><creator>Xiong, Lizhong</creator><general>American Society of Plant Biologists</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7S9</scope><scope>L.6</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20120301</creationdate><title>Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice</title><author>Xie, Kabin ; Shen, Jianqiang ; Hou, Xin ; Yao, Jialing ; Li, Xianghua ; Xiao, Jinghua ; Xiong, Lizhong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c570t-b57a0a73d16c1fcffae32382928c7552df6a6d3b5b49374ebbb2df77cc31c3733</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Arabidopsis thaliana</topic><topic>Biological and medical sciences</topic><topic>Developmental biology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>gene expression</topic><topic>Gene Expression Profiling</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Developmental</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>genetics</topic><topic>growth & development</topic><topic>Leaf development</topic><topic>Leaves</topic><topic>metabolism</topic><topic>MicroRNA</topic><topic>MicroRNAs</topic><topic>MicroRNAs - genetics</topic><topic>MicroRNAs - metabolism</topic><topic>Microscopy, Electron, Scanning</topic><topic>Oryza</topic><topic>Oryza - genetics</topic><topic>Oryza - growth & development</topic><topic>Oryza - metabolism</topic><topic>Oryza sativa</topic><topic>phase transition</topic><topic>Plant cells</topic><topic>Plant Epidermis</topic><topic>Plant Epidermis - genetics</topic><topic>Plant Epidermis - metabolism</topic><topic>Plant Epidermis - ultrastructure</topic><topic>Plant Leaves</topic><topic>Plant Leaves - genetics</topic><topic>Plant Leaves - growth & development</topic><topic>Plant Leaves - metabolism</topic><topic>Plant physiology and development</topic><topic>Plant Proteins</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Shoots</topic><topic>Plant Shoots - genetics</topic><topic>Plant Shoots - growth & development</topic><topic>Plant Shoots - metabolism</topic><topic>Plants</topic><topic>Plants, Genetically Modified</topic><topic>Plants, Genetically Modified - genetics</topic><topic>Plants, Genetically Modified - growth & development</topic><topic>Plants, Genetically Modified - metabolism</topic><topic>Rice</topic><topic>RNA</topic><topic>RNA, Plant</topic><topic>RNA, Plant - genetics</topic><topic>RNA, Plant - metabolism</topic><topic>shoots</topic><topic>SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION</topic><topic>temporal variation</topic><topic>Tillers</topic><topic>Time Factors</topic><topic>transcription factors</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><topic>Transcriptome</topic><topic>ultrastructure</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xie, Kabin</creatorcontrib><creatorcontrib>Shen, Jianqiang</creatorcontrib><creatorcontrib>Hou, Xin</creatorcontrib><creatorcontrib>Yao, Jialing</creatorcontrib><creatorcontrib>Li, Xianghua</creatorcontrib><creatorcontrib>Xiao, Jinghua</creatorcontrib><creatorcontrib>Xiong, Lizhong</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Plant physiology (Bethesda)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xie, Kabin</au><au>Shen, Jianqiang</au><au>Hou, Xin</au><au>Yao, Jialing</au><au>Li, Xianghua</au><au>Xiao, Jinghua</au><au>Xiong, Lizhong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice</atitle><jtitle>Plant physiology (Bethesda)</jtitle><addtitle>Plant Physiol</addtitle><date>2012-03-01</date><risdate>2012</risdate><volume>158</volume><issue>3</issue><spage>1382</spage><epage>1394</epage><pages>1382-1394</pages><issn>0032-0889</issn><issn>1532-2548</issn><eissn>1532-2548</eissn><coden>PPHYA5</coden><abstract>The highly conserved plant microRNA, miR156, is an essential regulator for plant development. In Arabidopsis (Arabidopsis ihaliana), miR156 modulates phase changing through its temporal expression in the shoot. In contrast to the gradual decrease over time in the shoot (or whole plant), we found that the miR156 level in rice (Oryza sativa) gradually increased from young leaf to old leaf after the juvenile stage. However, the miR156-targeted rice SQUAMOSA-promoter binding-like (SPL) transcription factors were either dominantly expressed in young leaves or not changed over the time of leaf growth. A comparison of the transcriptomes of early-emerged old leaves and later-emerged young leaves from wild-type and miR156 overexpression (miR156-OE) rice lines found that expression levels of 3,008 genes were affected in miR156-OE leaves. Analysis of temporal expression changes of these genes suggested that miR156 regulates gene expression in a leaf age-dependent manner, and miR156-OE attenuated the temporal changes of 2,660 genes. Interestingly, seven conserved plant microRNAs also showed temporal changes from young to old leaves, and miR156-OE also attenuated the temporal changes of six microRNAs. Consistent with global gene expression changes, miR156-OE plants resulted in dramatic changes including precocious leaf maturation and rapid leaf/tiller initiation. Our results indicate that another gradient of miR156 is present over time, a gradual increase during leaf growth, in addition to the gradual decrease during shoot growth. Gradually increased miR156 expression in the leaf might be essential for regulating the temporal expression of genes involved in leaf development.</abstract><cop>Rockville, MD</cop><pub>American Society of Plant Biologists</pub><pmid>22271747</pmid><doi>10.1104/pp.111.190488</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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| source | Jstor Complete Legacy; Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals |
| subjects | Arabidopsis thaliana Biological and medical sciences Developmental biology Fundamental and applied biological sciences. Psychology gene expression Gene Expression Profiling gene expression regulation Gene Expression Regulation, Developmental Gene Expression Regulation, Plant Genes Genes, Plant genetics growth & development Leaf development Leaves metabolism MicroRNA MicroRNAs MicroRNAs - genetics MicroRNAs - metabolism Microscopy, Electron, Scanning Oryza Oryza - genetics Oryza - growth & development Oryza - metabolism Oryza sativa phase transition Plant cells Plant Epidermis Plant Epidermis - genetics Plant Epidermis - metabolism Plant Epidermis - ultrastructure Plant Leaves Plant Leaves - genetics Plant Leaves - growth & development Plant Leaves - metabolism Plant physiology and development Plant Proteins Plant Proteins - genetics Plant Proteins - metabolism Plant Shoots Plant Shoots - genetics Plant Shoots - growth & development Plant Shoots - metabolism Plants Plants, Genetically Modified Plants, Genetically Modified - genetics Plants, Genetically Modified - growth & development Plants, Genetically Modified - metabolism Rice RNA RNA, Plant RNA, Plant - genetics RNA, Plant - metabolism shoots SYSTEMS BIOLOGY, MOLECULAR BIOLOGY, AND GENE REGULATION temporal variation Tillers Time Factors transcription factors Transcription Factors - genetics Transcription Factors - metabolism Transcriptome ultrastructure |
| title | Gradual Increase of miR156 Regulates Temporal Expression Changes of Numerous Genes during Leaf Development in Rice |
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